Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 6.0e-94 347.4 168 100.0
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.3e-69 265.8 168 80.4
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 5.9e-65 251.1 147 81.6
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 4.2e-63 245.0 148 80.4
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 4.2e-63 245.0 158 75.3
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 9.3e-63 243.8 132 85.6
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 9.3e-63 243.8 134 82.8
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 9.3e-63 243.8 147 78.9
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-62 243.4 139 81.3
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.2e-62 243.4 142 81.0
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 2.1e-62 242.7 128 85.2
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 3.5e-62 241.9 132 84.8
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 7.9e-62 240.7 133 83.5
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 7.9e-62 240.7 159 74.8
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.0e-61 240.4 120 90.8
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.3e-61 240.0 121 90.9
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.8e-61 239.6 126 85.7
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 3.0e-61 238.8 163 72.4
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 3.0e-61 238.8 163 73.0
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 3.0e-61 238.8 158 71.5
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 3.9e-61 238.4 120 90.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 6.7e-61 237.7 129 85.3
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 6.7e-61 237.7 124 87.1
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 8.7e-61 237.3 143 77.6
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 8.7e-61 237.3 139 79.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 8.7e-61 237.3 161 70.8
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.9e-60 236.1 119 89.1
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.9e-60 236.1 121 86.8
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.5e-60 235.7 123 87.0
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.5e-60 235.7 163 71.8
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 2.5e-60 235.7 165 70.3
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 3.3e-60 235.3 120 88.3
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 3.3e-60 235.3 126 83.3
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 3.3e-60 235.3 131 81.7
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 4.3e-60 235.0 136 83.1
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 4.3e-60 235.0 156 73.7
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 4.3e-60 235.0 165 69.7
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 5.7e-60 234.6 140 77.1
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 5.7e-60 234.6 168 69.6
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 5.7e-60 234.6 121 86.8
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 7.4e-60 234.2 144 76.4
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 7.4e-60 234.2 144 76.4
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 7.4e-60 234.2 169 72.2
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 9.7e-60 233.8 165 70.3
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 9.7e-60 233.8 139 79.9
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.3e-59 233.4 134 82.8
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.3e-59 233.4 140 77.1
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.3e-59 233.4 124 85.5
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 1.6e-59 233.0 158 71.5
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.6e-59 233.0 136 79.4
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.6e-59 233.0 130 83.1
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.6e-59 233.0 140 77.9
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 2.2e-59 232.6 136 78.7
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.2e-59 232.6 156 72.4
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.2e-59 232.6 121 86.0
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.7e-59 231.9 121 86.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 3.7e-59 231.9 162 72.2
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 3.7e-59 231.9 162 72.2
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.7e-59 231.9 129 82.9
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 3.7e-59 231.9 138 76.8
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 3.7e-59 231.9 140 76.4
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 3.7e-59 231.9 161 72.0
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 4.8e-59 231.5 161 70.8
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 6.3e-59 231.1 148 76.4
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.3e-59 231.1 128 83.6
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 8.2e-59 230.7 124 84.7
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 8.2e-59 230.7 125 84.0
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 8.2e-59 230.7 122 86.1
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 8.2e-59 230.7 158 70.9
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.2e-59 230.7 158 70.9
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 8.2e-59 230.7 158 72.2
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.8e-58 229.6 119 87.4
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.4e-58 229.2 124 83.9
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.4e-58 229.2 122 82.8
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.1e-58 228.8 124 83.9
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 3.1e-58 228.8 124 83.9
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 3.1e-58 228.8 158 72.2
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 3.1e-58 228.8 138 76.8
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 5.3e-58 228.0 161 68.9
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.3e-58 228.0 120 87.5
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 5.3e-58 228.0 139 75.5
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 5.3e-58 228.0 134 80.6
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 9.0e-58 227.3 122 85.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 9.0e-58 227.3 141 78.0
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 9.0e-58 227.3 131 77.9
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.0e-57 226.1 118 87.3
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 3.4e-57 225.3 139 76.3
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.8e-56 221.9 164 70.1
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 3.8e-56 221.9 120 81.7
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.1e-55 220.3 120 81.7
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 4.2e-55 218.4 133 74.4
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.4e-55 217.2 141 73.8
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.6e-54 215.3 131 77.9
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 4.6e-54 214.9 124 79.0
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.0e-53 213.8 120 77.5
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 3.9e-53 211.8 149 67.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.3e-52 208.8 120 74.2
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 4.3e-52 208.4 120 77.5
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 4.8e-51 204.9 117 77.8
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 4.1e-50 201.8 128 75.8
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 4.1e-50 201.8 145 65.5
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.2e-49 200.3 117 79.5
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.0e-49 199.5 102 88.2
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.7e-46 189.1 104 82.7
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 3.6e-46 188.7 129 68.2
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.8e-45 186.4 95 88.4
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 6.7e-45 184.5 162 61.1
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 6.7e-45 184.5 118 70.3
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 2.6e-41 172.6 96 82.3
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.3e-40 170.2 90 87.8
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 6.5e-40 167.9 125 68.8
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 4.0e-37 158.7 90 78.9
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.3e-34 148.3 75 88.0
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 5.9e-33 144.8 131 55.0
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.8e-32 142.1 118 55.1
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.9e-31 139.8 134 52.2
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.0e-29 134.0 133 50.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.0e-29 134.0 135 51.9
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 2.3e-29 132.9 85 69.4
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.0e-29 132.5 72 86.1
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 8.8e-29 131.0 132 48.5
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 7.5e-28 127.9 132 50.8
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.8e-27 125.9 70 84.3
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 6.3e-27 124.8 92 67.4
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.9e-24 115.9 124 49.2
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.1e-23 114.0 121 47.9
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.8e-21 106.7 144 41.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 2.0e-20 103.2 131 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 2.9e-16 89.4 78 57.7
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 3.4e-12 75.9 35 91.4
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 8.3e-11 71.2 120 43.3
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.4e-10 70.5 31 93.5
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 5.9e-09 65.1 83 47.0
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 7.8e-09 64.7 114 30.7
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 8.6e-08 61.2 29 89.7
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.5e-07 59.7 119 31.1
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 9.5e-07 57.8 73 45.2


User provided reference genes

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