Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 8.4e-213 743.4 374 100.0
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 5.0e-141 505.0 317 80.1
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 3.8e-133 478.8 334 74.0
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 3.0e-117 426.0 325 64.9
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.1e-116 424.1 325 64.3
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 4.0e-114 415.6 324 64.8
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 2.0e-113 413.3 334 62.9
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 4.4e-113 412.1 326 63.5
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 4.4e-113 412.1 326 63.5
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 2.4e-111 406.4 330 61.5
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 5.4e-111 405.2 325 63.4
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 7.8e-110 401.4 330 61.2
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 1.2e-107 394.0 330 60.9
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 2.8e-107 392.9 330 58.8
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 3.6e-107 392.5 330 61.2
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 6.2e-107 391.7 342 58.8
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.8e-106 390.2 327 59.9
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 3.1e-106 389.4 323 59.8
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 6.8e-106 388.3 324 60.8
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 1.5e-105 387.1 322 58.7
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 2.6e-105 386.3 322 59.0
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 9.9e-105 384.4 325 60.3
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 3.7e-104 382.5 333 58.9
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 5.4e-103 378.6 330 57.3
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 9.2e-103 377.9 328 57.6
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 9.2e-103 377.9 318 60.1
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 1.2e-102 377.5 324 59.6
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.2e-102 377.5 324 59.6
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 1.2e-102 377.5 323 59.8
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 6.0e-102 375.2 325 59.1
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 7.8e-102 374.8 300 64.0
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 1.3e-101 374.0 328 57.0
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 1.3e-101 374.0 316 60.1
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 6.6e-101 371.7 332 57.5
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 6.6e-101 371.7 332 57.5
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 6.6e-101 371.7 321 59.2
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 1.1e-100 370.9 350 54.6
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 1.9e-100 370.2 320 57.5
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 1.9e-100 370.2 329 56.5
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 3.3e-100 369.4 345 54.8
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 3.3e-100 369.4 329 56.8
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 4.3e-100 369.0 320 57.2
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 5.6e-100 368.6 319 58.0
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 1.2e-99 367.5 329 58.1
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 2.1e-99 366.7 321 59.5
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 2.8e-99 366.3 330 57.0
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 3.6e-99 365.9 326 56.1
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 4.7e-99 365.5 330 57.0
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 4.7e-99 365.5 329 57.8
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 4.7e-99 365.5 329 57.8
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 1.2e-97 360.9 329 55.9
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 1.2e-97 360.9 329 55.3
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 5.8e-97 358.6 329 56.5
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 1.7e-96 357.1 330 54.8
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 2.9e-96 356.3 331 55.3
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 2.9e-96 356.3 316 55.4
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 3.8e-96 355.9 320 57.5
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 6.4e-96 355.1 322 58.4
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 6.4e-96 355.1 329 56.2
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 8.4e-96 354.8 316 57.6
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.4e-95 354.0 333 56.8
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 1.4e-95 354.0 327 56.3
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 1.9e-95 353.6 329 55.3
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 4.2e-95 352.4 329 56.2
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 9.2e-95 351.3 329 58.1
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 2.1e-94 350.1 326 53.7
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 4.6e-94 349.0 334 53.0
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 6.0e-94 348.6 329 54.7
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 2.3e-93 346.7 327 53.5
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 1.9e-92 343.6 317 54.6
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 1.9e-92 343.6 334 51.5
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 1.9e-92 343.6 296 59.8
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 2.5e-92 343.2 282 62.1
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 1.2e-91 340.9 281 61.6
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 3.6e-91 339.3 317 54.9
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 3.6e-91 339.3 332 51.8
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 1.1e-90 337.8 319 55.2
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 1.1e-90 337.8 319 55.2
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 1.1e-90 337.8 323 53.6
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.1e-90 337.8 322 54.7
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 1.4e-90 337.4 335 52.2
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 2.0e-89 333.6 326 53.7
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 9.9e-89 331.3 319 54.5
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 1.7e-88 330.5 324 53.1
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 4.9e-88 328.9 289 57.4
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 1.9e-87 327.0 318 53.8
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 1.6e-86 323.9 364 51.4
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.1e-82 311.2 266 60.2
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 4.0e-82 309.3 310 52.3
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 4.5e-81 305.8 315 54.0
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 4.6e-78 295.8 327 52.3
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 5.1e-77 292.4 329 47.1
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 3.7e-75 286.2 331 46.2
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 7.6e-73 278.5 322 49.4
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 3.2e-71 273.1 264 53.0
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 3.5e-70 269.6 329 43.2
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 4.6e-70 269.2 321 45.2
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 6.2e-67 258.8 339 42.2
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 1.3e-64 251.1 361 41.3
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 5.5e-63 245.7 257 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 3.9e-61 239.6 330 42.4
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 3.1e-58 229.9 208 57.2
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 1.7e-56 224.2 385 36.4
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 1.4e-55 221.1 387 37.0
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 4.6e-54 216.1 181 60.2
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 3.9e-45 186.4 149 65.1
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 1.0e-40 171.8 138 60.1
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 2.7e-38 163.7 133 60.9
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 4.4e-36 156.4 117 63.2
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 2.8e-35 153.7 104 72.1
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 1.2e-33 148.3 135 52.6
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 2.0e-33 147.5 318 30.5
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 8.5e-32 142.1 201 39.8
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 4.4e-28 129.8 110 61.8
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 2.2e-27 127.5 93 66.7
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 3.8e-24 116.7 109 54.1
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 2.6e-20 104.0 87 56.3
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 4.4e-20 103.2 144 42.4
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 2.0e-17 94.4 111 46.8
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 3.6e-14 83.6 61 63.9
Atru.chr5.3333 Acer truncatum HOM05D000263 ORTHO05D000213 4.0e-13 80.1 103 46.6
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 1.5e-12 78.2 320 23.1
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 1.7e-11 74.7 67 53.7
Atru.chr5.3338 Acer truncatum HOM05D002637 ORTHO05D008095 2.7e-09 67.4 53 66.0
TAR629G2985 Trochodendron aralioides HOM05D002637 ORTHO05D008095 3.3e-07 60.5 45 60.0


User provided reference genes

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