Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 3.2e-78 295.0 154 100.0
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 3.2e-78 295.0 154 100.0
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 3.2e-78 295.0 154 100.0
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 2.1e-77 292.4 154 99.4
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 6.6e-63 244.2 140 93.6
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 6.6e-63 244.2 140 93.6
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 6.6e-63 244.2 140 93.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 6.6e-63 244.2 140 93.6
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 6.6e-63 244.2 140 93.6
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 6.6e-63 244.2 140 93.6
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 6.6e-63 244.2 140 93.6
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 1.6e-61 239.6 140 90.7
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 1.6e-61 239.6 140 90.7
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.8e-61 238.8 140 92.1
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.0
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.0
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.0
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.0
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.0
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.0
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.7
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 6.1e-61 237.7 140 90.7
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 1.0e-60 236.9 140 91.4
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 1.0e-60 236.9 140 91.4
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.4e-60 236.5 131 86.3
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.8e-60 236.1 140 91.4
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 8.9e-60 233.8 140 90.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 8.9e-60 233.8 140 90.7
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 8.9e-60 233.8 140 90.7
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 8.9e-60 233.8 140 90.7
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 8.9e-60 233.8 140 90.0
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.2e-59 233.4 129 96.9
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.2e-59 233.4 140 90.0
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-59 233.4 140 90.0
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-59 233.4 140 90.0
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-59 233.4 140 90.0
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-59 233.4 140 90.0
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 88.6
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 2.0e-59 232.6 140 89.3
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 5.7e-59 231.1 140 87.9
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.7e-59 231.1 140 80.0
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 7.5e-59 230.7 140 87.9
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 9.8e-59 230.3 141 88.7
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 9.8e-59 230.3 140 87.9
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 9.8e-59 230.3 140 88.6
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 1.7e-58 229.6 129 86.0
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 2.2e-58 229.2 140 89.3
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 2.2e-58 229.2 140 89.3
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.9e-58 228.0 140 87.9
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.9e-58 228.0 140 87.9
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 4.9e-58 228.0 140 88.6
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 6.3e-58 227.6 132 93.2
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-57 226.1 140 85.7
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 4.1e-57 224.9 140 85.7
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 1.2e-56 223.4 131 83.2
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 5.9e-56 221.1 140 85.0
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 2.3e-55 219.2 133 90.2
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 2.5e-54 215.7 103 99.0
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 6.1e-53 211.1 103 97.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 6.1e-53 211.1 103 97.1
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 1.0e-52 210.3 140 82.1
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 1.0e-52 210.3 140 82.1
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.8e-52 209.5 119 95.0
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.4e-51 204.9 101 95.0
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 5.8e-51 204.5 100 97.0
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.7e-50 203.0 101 93.1
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.3e-50 200.7 123 90.2
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 1.1e-49 200.3 101 92.1
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 2.4e-49 199.1 140 72.9
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.4e-49 198.0 97 95.9
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 2.0e-48 196.1 140 72.9
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 7.8e-48 194.1 97 93.8
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.3e-47 192.6 120 78.3
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.9e-46 189.5 95 92.6
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 5.6e-46 188.0 94 91.5
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 7.3e-46 187.6 94 91.5
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 7.3e-46 187.6 94 91.5
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 7.3e-46 187.6 140 71.4
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 9.5e-46 187.2 92 93.5
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 9.5e-46 187.2 92 93.5
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 9.5e-46 187.2 92 94.6
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-45 185.3 91 93.4
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 3.6e-45 185.3 94 90.4
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-44 182.2 99 86.9
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-44 182.2 91 92.3
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 4.4e-43 178.3 100 97.0
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.7e-42 176.4 124 71.0
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.9e-42 175.6 98 98.0
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 1.1e-41 173.7 132 63.6
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.4e-41 173.3 83 96.4
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.4e-41 171.4 95 84.2
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 3.0e-39 165.6 95 81.1
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 8.6e-39 164.1 92 81.5
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.3e-36 156.0 114 79.8
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 4.0e-36 155.2 112 80.4
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 5.2e-36 154.8 91 82.4
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 7.6e-35 151.0 85 83.5
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 1.3e-34 150.2 92 79.3
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 6.4e-34 147.9 98 86.7
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-33 147.1 77 92.2
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 2.4e-33 146.0 128 61.7
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 5.4e-33 144.8 114 67.5
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.2e-32 143.7 72 93.1
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 3.5e-32 142.1 92 87.0
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 6.0e-32 141.4 93 86.0
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 6.0e-32 141.4 93 86.0
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 6.0e-32 141.4 124 64.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 4.3e-30 135.2 69 92.8
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 7.3e-30 134.4 65 96.9
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 8.1e-29 131.0 137 49.6
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 3.4e-27 125.6 65 89.2
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.4e-25 119.4 114 57.9
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 6.0e-24 114.8 76 73.7
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-23 112.1 74 74.3
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-22 109.8 85 69.4
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 5.6e-22 108.2 77 72.7
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 9.6e-22 107.5 84 60.7
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.3e-21 107.1 72 73.6
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-21 105.5 54 90.7
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 3.6e-21 105.5 74 74.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 8.1e-21 104.4 72 70.8
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-20 104.0 72 70.8
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-20 104.0 72 70.8
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-20 104.0 72 70.8
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-20 104.0 54 88.9
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 1.4e-20 103.6 53 90.6
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.8e-20 103.2 124 47.6
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 3.1e-20 102.4 140 45.0
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 9.0e-20 100.9 53 88.7
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 1.7e-18 96.7 64 70.3
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 1.7e-18 96.7 82 58.5
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 5.4e-17 91.7 48 91.7
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.6e-16 90.1 95 56.8
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 3.5e-16 89.0 45 88.9
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 7.9e-16 87.8 43 95.3
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 7.9e-16 87.8 114 45.6
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 1.0e-15 87.4 64 68.8
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.9e-15 85.5 61 67.2
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 1.1e-14 84.0 47 78.7
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 1.3e-13 80.5 73 58.9
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 1.3e-13 80.5 55 70.9
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 1.8e-07 60.1 51 60.8
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 1.1e-06 57.4 37 75.7
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 1.5e-06 57.0 129 36.4
ClCG08G006540 Citrullus lanatus HOM05D000533 ORTHO05D006151 5.6e-06 55.1 29 86.2
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 7.4e-06 54.7 26 96.2


User provided reference genes

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