Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 3.4e-253 877.9 447 100.0
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 2.3e-201 705.7 431 83.8
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.7e-199 699.5 447 81.0
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 2.6e-197 692.2 462 78.1
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 2.1e-178 629.4 453 73.7
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 8.8e-177 624.0 407 79.6
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 3.5e-173 612.1 448 73.7
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 2.3e-169 599.4 422 76.8
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 8.6e-164 580.9 419 74.2
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 8.0e-162 574.3 400 74.2
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 6.8e-161 571.2 399 75.7
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 3.4e-160 568.9 456 68.2
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 7.5e-160 567.8 416 73.8
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 1.7e-159 566.6 406 73.2
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 3.7e-159 565.5 418 71.5
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 8.3e-159 564.3 418 71.5
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 5.4e-158 561.6 400 72.8
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 9.2e-158 560.8 409 74.3
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 2.7e-157 559.3 393 76.1
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 2.7e-157 559.3 397 73.3
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 3.5e-157 558.9 422 71.8
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.6e-157 558.5 394 75.1
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 7.8e-157 557.8 379 77.6
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.0e-156 557.4 406 71.2
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 1.3e-156 557.0 375 78.4
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.3e-156 557.0 404 73.3
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 1.7e-156 556.6 357 80.1
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.3e-156 556.2 395 73.4
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 3.0e-156 555.8 464 65.1
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.0e-156 555.8 418 71.5
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.3e-155 552.4 413 72.9
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 4.3e-155 552.0 390 75.4
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.3e-155 551.2 403 71.2
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.6e-154 550.1 424 70.3
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 3.6e-154 548.9 404 73.0
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 8.0e-154 547.7 403 72.2
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.8e-153 546.6 421 70.1
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 2.3e-153 546.2 398 72.4
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 4.0e-153 545.4 396 72.7
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 5.2e-153 545.0 404 70.0
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 7.5e-152 541.2 399 70.7
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.2e-151 539.7 393 71.5
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 2.9e-151 539.3 414 68.6
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.9e-151 538.5 376 74.5
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 8.3e-151 537.7 412 70.1
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 8.3e-151 537.7 396 71.7
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 8.3e-151 537.7 408 69.4
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 3.2e-150 535.8 412 68.9
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.2e-150 535.8 408 71.1
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 7.0e-150 534.6 382 73.8
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 1.6e-149 533.5 380 74.2
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.1e-149 533.1 424 67.9
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 2.7e-149 532.7 396 70.7
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 3.5e-149 532.3 376 74.7
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 6.0e-149 531.6 460 64.8
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.0e-148 530.8 442 65.8
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.7e-148 530.0 408 70.3
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 2.3e-148 529.6 381 73.8
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 3.0e-148 529.3 412 68.9
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 8.6e-148 527.7 421 67.5
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.9e-147 526.6 419 67.3
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.3e-147 525.8 421 67.5
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.3e-147 525.8 418 67.7
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 8.9e-145 517.7 378 72.0
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 1.3e-143 513.8 402 68.7
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.7e-143 513.5 373 74.0
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.9e-143 512.7 444 63.3
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 3.7e-143 512.3 349 78.2
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.7e-143 512.3 422 66.8
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 1.1e-142 510.8 377 72.7
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.5e-141 505.8 415 68.2
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.3e-139 498.8 333 78.7
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.1e-138 496.5 333 78.1
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 2.0e-136 490.0 403 67.0
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 2.9e-135 486.1 466 59.2
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 5.4e-134 481.9 411 64.0
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 3.5e-133 479.2 398 65.6
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 7.8e-133 478.0 399 65.7
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 1.5e-131 473.8 415 61.7
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 2.5e-131 473.0 377 66.6
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 9.6e-131 471.1 372 66.9
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 3.4e-128 462.6 376 65.4
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 5.4e-126 455.3 370 65.4
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.2e-125 454.1 364 66.5
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 1.4e-121 440.7 366 63.1
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 1.2e-120 437.6 394 61.2
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 5.8e-120 435.3 368 64.4
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 3.9e-116 422.5 417 58.8
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 8.7e-116 421.4 422 57.8
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 1.1e-115 421.0 386 60.9
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 2.5e-115 419.9 430 56.7
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 2.8e-114 416.4 381 60.6
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 2.8e-114 416.4 387 60.7
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 2.8e-114 416.4 387 60.7
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 2.8e-114 416.4 433 56.4
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 1.4e-110 404.1 320 67.8
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.9e-110 403.7 320 67.8
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 1.2e-104 384.4 382 57.9
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 1.2e-104 384.4 382 57.9
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.7e-103 380.6 325 64.6
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 1.1e-102 377.9 373 56.8
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 1.4e-102 377.5 396 54.5
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 6.1e-101 372.1 369 57.5
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 6.1e-101 372.1 369 57.5
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 2.2e-95 353.6 377 55.2
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.4e-83 312.8 227 73.6
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 7.0e-81 305.4 280 63.6
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 2.7e-77 293.5 269 58.7
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 5.2e-68 262.7 157 85.4
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 1.7e-63 247.7 362 40.3
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.9e-54 217.6 383 38.9
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.6e-53 214.5 387 37.5
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 6.3e-50 202.6 139 75.5
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 1.9e-46 191.0 131 76.3
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 2.5e-46 190.7 160 65.6
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 1.5e-43 181.4 432 34.7
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 8.3e-42 175.6 117 77.8
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.2e-41 173.7 402 36.8
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 6.6e-39 166.0 152 59.9
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 1.1e-36 158.7 234 46.2
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.3e-31 141.7 120 62.5
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 3.7e-26 123.6 201 39.3
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 6.0e-24 116.3 78 75.6
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 4.3e-22 110.2 305 31.1
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 3.6e-21 107.1 79 68.4
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 4.0e-20 103.6 98 58.2
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 2.6e-11 74.3 234 30.3
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 2.6e-11 74.3 377 25.5
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.2e-09 67.4 211 29.4
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 2.1e-08 64.7 272 26.5
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.7e-08 64.3 264 26.5
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.7e-08 64.3 264 26.5
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 6.0e-08 63.2 368 22.8
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 7.9e-08 62.8 275 26.5
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 1.0e-07 62.4 284 25.4
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 1.0e-07 62.4 351 24.8
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 1.7e-07 61.6 360 23.9
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 3.9e-07 60.5 300 26.0
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 5.1e-07 60.1 269 26.4
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 6.6e-07 59.7 359 22.0
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 8.7e-07 59.3 275 25.5
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 8.7e-07 59.3 351 23.4
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 1.1e-06 58.9 278 24.8
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.1e-06 58.9 300 25.7
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 1.1e-06 58.9 360 22.8
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 1.5e-06 58.5 326 21.5
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 1.5e-06 58.5 410 23.2
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 1.5e-06 58.5 399 22.1
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 1.5e-06 58.5 395 24.3
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 1.5e-06 58.5 275 25.5
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 1.5e-06 58.5 360 22.8
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 1.9e-06 58.2 405 23.5
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.3e-06 57.0 57 54.4
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 4.3e-06 57.0 326 21.5
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 4.3e-06 57.0 275 25.1
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 4.3e-06 57.0 275 25.1
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 4.3e-06 57.0 378 22.0
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 5.6e-06 56.6 381 23.4
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 7.3e-06 56.2 412 21.8
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 7.3e-06 56.2 273 23.8
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 7.3e-06 56.2 426 23.5
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 7.3e-06 56.2 274 24.8
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 7.3e-06 56.2 281 25.6
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 9.6e-06 55.8 283 24.4


User provided reference genes

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