Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0410981 Helianthus annuus HOM05D004000 ORTHO05D004629 1.5e-80 302.8 153 100.0
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 1.3e-50 203.4 140 75.0
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 2.0e-40 169.5 140 60.7
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 2.3e-39 166.0 140 60.7
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 2.9e-39 165.6 140 56.4
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 8.6e-39 164.1 140 57.9
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 1.5e-38 163.3 140 57.9
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 1.9e-38 162.9 154 51.9
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 1.9e-38 162.9 140 60.0
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 2.5e-38 162.5 140 56.4
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 3.3e-38 162.2 140 57.1
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 5.6e-38 161.4 140 58.6
MELO3C012597.2 Cucumis melo HOM05D004000 ORTHO05D004629 9.5e-38 160.6 142 59.9
CsaV3_7G022990 Cucumis sativus L. HOM05D004000 ORTHO05D004629 9.5e-38 160.6 142 59.9
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 1.2e-37 160.2 140 58.6
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 1.6e-37 159.8 140 56.4
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 2.1e-37 159.5 140 57.9
Dinv42470 Davidia involucrata HOM05D004000 ORTHO05D004629 2.8e-37 159.1 140 57.1
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 2.8e-37 159.1 140 58.6
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 3.6e-37 158.7 140 58.6
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 3.6e-37 158.7 140 55.7
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 3.6e-37 158.7 140 56.4
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 6.1e-37 157.9 140 57.1
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 6.1e-37 157.9 140 56.4
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 8.0e-37 157.5 140 57.1
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 1.0e-36 157.1 140 55.7
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 1.4e-36 156.8 140 54.3
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 1.4e-36 156.8 140 56.4
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 1.4e-36 156.8 140 55.0
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 1.4e-36 156.8 140 55.0
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 1.8e-36 156.4 140 55.7
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 1.8e-36 156.4 140 56.4
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 2.3e-36 156.0 140 57.1
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 2.3e-36 156.0 140 57.9
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 2.3e-36 156.0 140 57.9
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 3.0e-36 155.6 140 55.7
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 3.0e-36 155.6 140 57.1
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 3.0e-36 155.6 140 55.7
Thecc.07G186500 Theobroma cacao HOM05D004000 ORTHO05D004629 3.0e-36 155.6 140 56.4
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 4.0e-36 155.2 140 57.1
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 4.0e-36 155.2 140 54.3
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 5.2e-36 154.8 140 57.1
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 5.2e-36 154.8 140 53.6
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 6.8e-36 154.5 140 55.0
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 6.8e-36 154.5 140 55.7
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 6.8e-36 154.5 140 55.0
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 1.5e-35 153.3 140 55.0
FvH4_3g14590 Fragaria vesca HOM05D004000 ORTHO05D004629 2.6e-35 152.5 140 55.0
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 2.6e-35 152.5 162 51.9
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 2.6e-35 152.5 140 55.7
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 2.6e-35 152.5 140 55.7
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 2.6e-35 152.5 140 54.3
Medtr2g064415 Medicago truncatula HOM05D004000 ORTHO05D004629 3.4e-35 152.1 140 55.7
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 3.4e-35 152.1 166 49.4
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 5.7e-35 151.4 140 53.6
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 5.7e-35 151.4 140 54.3
TPR.G27463 Trifolium pratense HOM05D004000 ORTHO05D004629 1.3e-34 150.2 140 55.7
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 2.2e-34 149.4 140 55.0
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 2.2e-34 149.4 140 54.3
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 2.9e-34 149.1 140 53.6
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 6.4e-34 147.9 140 53.6
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 6.4e-34 147.9 140 50.7
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 8.3e-34 147.5 140 51.4
AL3G24440 Arabidopsis lyrata HOM05D004000 ORTHO05D004629 8.3e-34 147.5 140 52.1
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 8.3e-34 147.5 149 53.7
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 1.1e-33 147.1 140 52.1
Gohir.A08G231700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 1.4e-33 146.7 132 55.3
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 1.4e-33 146.7 140 51.4
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 1.8e-33 146.4 141 53.2
Gorai.004G268800 Gossypium raimondii HOM05D004000 ORTHO05D004629 2.4e-33 146.0 140 52.9
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 3.2e-33 145.6 134 56.7
Thhalv10021347m.g Eutrema salsugineum HOM05D004000 ORTHO05D004629 3.2e-33 145.6 140 52.9
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 5.4e-33 144.8 141 52.5
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 5.4e-33 144.8 132 57.6
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 5.4e-33 144.8 158 48.7
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 9.2e-33 144.1 139 51.8
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 1.2e-32 143.7 140 52.1
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 1.2e-32 143.7 142 51.4
Gohir.D08G252100 Gossypium hirsutum HOM05D004000 ORTHO05D004629 2.0e-32 142.9 140 51.4
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 2.0e-32 142.9 154 50.6
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 2.7e-32 142.5 140 50.7
Sp3g10920 Schrenkiella parvula HOM05D004000 ORTHO05D004629 1.0e-31 140.6 140 50.7
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 2.3e-31 139.4 137 48.9
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 3.0e-31 139.0 140 48.6
BcaB06g25514 Brassica carinata HOM05D004000 ORTHO05D004629 3.9e-31 138.7 140 50.7
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 5.0e-31 138.3 140 50.7
TAR627G0782 Trochodendron aralioides HOM05D004000 ORTHO05D004629 5.0e-31 138.3 144 51.4
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 5.0e-31 138.3 140 51.4
BcaB04g18717 Brassica carinata HOM05D001323 ORTHO05D001223 6.6e-31 137.9 140 50.7
BcaC05g29239 Brassica carinata HOM05D004000 ORTHO05D004629 6.6e-31 137.9 140 50.7
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 1.1e-30 137.1 135 57.0
Duzib213G0764 Durio zibethinus HOM05D004000 ORTHO05D004629 1.1e-30 137.1 130 53.1
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.5e-30 136.7 140 50.0
BcaC09g48261 Brassica carinata HOM05D004000 ORTHO05D004629 3.3e-30 135.6 140 49.3
A01p40750 Brassica napus HOM05D004000 ORTHO05D004629 5.6e-30 134.8 140 47.9
Actinidia25397 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.6e-29 133.3 140 49.3
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 2.1e-29 132.9 181 43.1
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 2.8e-29 132.5 153 47.7
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 3.6e-29 132.1 142 49.3
Aa31LG8G60 Aethionema arabicum HOM05D004000 ORTHO05D004629 4.0e-28 128.6 151 46.4
BcaB04g21038 Brassica carinata HOM05D004000 ORTHO05D004629 5.2e-28 128.3 140 47.1
BraA03t12933Z Brassica rapa HOM05D001323 ORTHO05D001223 6.8e-28 127.9 151 46.4
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 8.9e-28 127.5 156 44.9
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 2.0e-27 126.3 148 47.3
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 5.8e-27 124.8 156 44.2
Nn2g15475 Nelumbo nucifera HOM05D004000 ORTHO05D004629 2.2e-26 122.9 82 70.7
EL10Ac2g03287 Beta vulgaris HOM05D004000 ORTHO05D004629 2.9e-26 122.5 189 39.2
Pp3c12_24690 Physcomitrium patens HOM05D004000 ORTHO05D004629 4.9e-26 121.7 140 45.0
ATR0605G293 Amborella trichopoda HOM05D004000 ORTHO05D004629 1.9e-25 119.8 75 74.7
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 1.9e-25 119.8 160 43.8
Hund20115 Selenicereus undatus HOM05D004000 ORTHO05D004629 2.4e-25 119.4 140 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2611 Anthoceros agrestis HOM05D004000 ORTHO05D004629 4.1e-25 118.6 141 44.0
Oeu034053.1 Olea europaea HOM05D004000 ORTHO05D004629 7.0e-25 117.9 104 57.7
Solyc12g017310.3 Solanum lycopersicum HOM05D004000 ORTHO05D004629 9.2e-25 117.5 140 39.3
Sopen12g008120 Solanum pennellii HOM05D004000 ORTHO05D004629 9.2e-25 117.5 140 39.3
PGSC0003DMG400009664 Solanum tuberosum HOM05D004000 ORTHO05D004629 9.2e-25 117.5 140 40.0
A03p37780 Brassica napus HOM05D001323 ORTHO05D001223 2.0e-24 116.3 131 45.8
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 2.0e-24 116.3 140 43.6
Rhsim04G0003200 Rhododendron simsii HOM05D004000 ORTHO05D004629 6.0e-24 114.8 197 37.1
C05p55150 Brassica napus HOM05D004000 ORTHO05D004629 2.3e-23 112.8 140 45.0
BolC5t34183H Brassica oleracea HOM05D004000 ORTHO05D004629 2.3e-23 112.8 140 45.0
Lsat_1_v5_gn_7_110801 Lactuca sativa HOM05D004000 ORTHO05D004629 2.3e-23 112.8 170 40.0
Nitab4.5_0000388g0080 Nicotiana tabacum HOM05D004000 ORTHO05D004629 3.9e-23 112.1 131 42.7
BraA05t22474Z Brassica rapa HOM05D004000 ORTHO05D004629 5.0e-23 111.7 140 44.3
CAN.G321.32 Capsicum annuum HOM05D004000 ORTHO05D004629 5.0e-23 111.7 140 37.9
Nitab4.5_0002597g0020 Nicotiana tabacum HOM05D004000 ORTHO05D004629 6.6e-23 111.3 131 42.0
A05p36700 Brassica napus HOM05D004000 ORTHO05D004629 8.6e-23 110.9 140 44.3
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 1.1e-22 110.5 131 42.0
BraA01t04109Z Brassica rapa HOM05D004000 ORTHO05D004629 1.5e-22 110.2 140 41.4
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 4.3e-22 108.6 139 44.6
AUR62040875 Chenopodium quinoa HOM05D004000 ORTHO05D004629 1.1e-20 104.0 129 45.0
Zm00001eb279840 Zea mays HOM05D004000 ORTHO05D004629 1.1e-20 104.0 75 64.0
Gorai.009G353900 Gossypium raimondii HOM05D004000 ORTHO05D004629 4.0e-20 102.1 130 41.5
Gohir.A04G050600 Gossypium hirsutum HOM05D004000 ORTHO05D004629 8.9e-20 100.9 154 37.7
BolC1t05181H Brassica oleracea HOM05D004000 ORTHO05D004629 2.0e-19 99.8 142 40.1
Gohir.D05G330150 Gossypium hirsutum HOM05D004000 ORTHO05D004629 2.0e-19 99.8 130 40.8
C01p52380 Brassica napus HOM05D004000 ORTHO05D004629 3.7e-18 95.5 131 42.0
SMO364G0004 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 1.2e-16 90.5 142 38.7
Cre12.g487400 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 7.8e-16 87.8 144 34.7
Cpa.g.sc32.66 Carica papaya HOM05D004000 ORTHO05D004629 2.5e-14 82.8 84 51.2
FvH4_1g16700 Fragaria vesca HOM05D000049 ORTHO05D004629 6.2e-13 78.2 150 32.0
FAN19G2643 Fragaria x ananassa HOM05D004000 ORTHO05D004629 6.2e-13 78.2 150 32.0
FAN26G0293 Fragaria x ananassa HOM05D004000 ORTHO05D004629 6.2e-13 78.2 150 32.0
Sed0027108 Sechium edule HOM05D004000 ORTHO05D004629 6.8e-12 74.7 79 50.6
FAN23G0482 Fragaria x ananassa HOM05D000049 ORTHO05D004629 8.9e-12 74.3 150 30.7
FAN28G2261 Fragaria x ananassa HOM05D004000 ORTHO05D004629 8.9e-12 74.3 150 30.7
CSS0009445 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.2e-11 73.9 75 46.7
Lj2A12G40 Lonicera japonica HOM05D004000 ORTHO05D004629 1.2e-11 73.9 47 72.3
CBR_g22391 Chara braunii HOM05D004000 ORTHO05D004629 3.4e-11 72.4 103 36.9
RcHm_v2.0_Chr3g0465841 Rosa chinensis HOM05D001399 ORTHO05D012334 3.4e-11 72.4 47 68.1
DCAR_016849 Daucus carota HOM05D004000 ORTHO05D004629 7.6e-11 71.2 79 48.1
CSS0037197 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 9.9e-11 70.9 79 46.8
CSS0038370 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 9.9e-11 70.9 79 46.8
Actinidia12763 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.3e-10 70.5 88 42.0
CSS0031634 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.7e-10 70.1 67 49.3
FAN11G2975 Fragaria x ananassa HOM05D004000 ORTHO05D004629 2.2e-10 69.7 118 38.1
AUR62037658 Chenopodium quinoa HOM05D004000 ORTHO05D004629 3.8e-10 68.9 139 33.8
Lj2C12T8 Lonicera japonica HOM05D004000 ORTHO05D004629 2.1e-08 63.2 46 63.0
Oeu034052.1 Olea europaea HOM05D004000 ORTHO05D004629 4.6e-08 62.0 46 63.0
FAN28G0737 Fragaria x ananassa HOM05D004000 ORTHO05D004629 6.0e-08 61.6 91 36.3
ATR0605G256 Amborella trichopoda HOM05D004000 ORTHO05D004629 7.8e-08 61.2 38 65.8
FAN21G3980 Fragaria x ananassa HOM05D004000 ORTHO05D004629 7.8e-08 61.2 38 63.2
FAN25G1212 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.5e-06 57.0 38 63.2
FAN16G0250 Fragaria x ananassa HOM05D004000 ORTHO05D004629 5.6e-06 55.1 38 60.5


User provided reference genes

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