Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0410351 Helianthus annuus HOM05D001218 ORTHO05D022830 2.7e-35 151.4 71 100.0
Eucgr.F01823 Eucalyptus grandis HOM05D001218 ORTHO05D004088 2.7e-19 98.2 52 82.7
HanXRQChr16g0512491 Helianthus annuus HOM05D001218 ORTHO05D004088 2.7e-19 98.2 47 93.6
Cfa014150 Carpinus fangiana HOM05D001218 ORTHO05D004088 3.5e-19 97.8 51 84.3
Haze_22874 Corylus avellana HOM05D001218 ORTHO05D004088 3.5e-19 97.8 51 84.3
Sabra02G0002000 Salix brachista HOM05D001218 ORTHO05D004088 3.5e-19 97.8 51 82.4
Duzib093G2014 Durio zibethinus HOM05D001218 ORTHO05D004088 6.0e-19 97.1 52 82.7
Potri.002G003100 Populus trichocarpa HOM05D001218 ORTHO05D004088 6.0e-19 97.1 51 82.4
Duzib116G0454 Durio zibethinus HOM05D001218 ORTHO05D004088 1.3e-18 95.9 52 80.8
Manes.05G129500 Manihot esculenta HOM05D001218 ORTHO05D004088 2.3e-18 95.1 51 80.4
CANSAT25G3586 Cannabis sativa HOM05D001218 ORTHO05D004088 3.0e-18 94.7 51 82.4
Carub.0001s2042 Capsella rubella HOM05D001218 ORTHO05D004088 3.0e-18 94.7 50 84.0
CARHR021410 Cardamine hirsuta HOM05D001218 ORTHO05D004088 3.0e-18 94.7 50 84.0
Ciclev10000595m.g Citrus clementina HOM05D001218 ORTHO05D004088 3.0e-18 94.7 51 80.4
Thhalv10007087m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 3.0e-18 94.7 50 84.0
Dinv23340 Davidia involucrata HOM05D001218 ORTHO05D004088 3.9e-18 94.4 51 84.3
PSO017G6550 Papaver somniferum HOM05D001218 ORTHO05D004088 5.1e-18 94.0 51 82.4
PSO170G0003 Papaver somniferum HOM05D001218 ORTHO05D004088 5.1e-18 94.0 51 82.4
Aqoxy5G00952 Aquilegia oxysepala HOM05D001218 ORTHO05D004088 6.6e-18 93.6 51 82.4
Gohir.A02G087100 Gossypium hirsutum HOM05D001218 ORTHO05D004088 6.6e-18 93.6 52 76.9
Gohir.D02G101900 Gossypium hirsutum HOM05D001218 ORTHO05D004088 6.6e-18 93.6 52 76.9
Gorai.005G115600 Gossypium raimondii HOM05D001218 ORTHO05D004088 6.6e-18 93.6 52 76.9
Lsat_1_v5_gn_9_48180 Lactuca sativa HOM05D001218 ORTHO05D004088 6.6e-18 93.6 47 87.2
AT1G20950 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 8.6e-18 93.2 53 75.5
arahy.Tifrunner.gnm1.ann1.BFE9YH Arachis hypogaea HOM05D001218 ORTHO05D004088 8.6e-18 93.2 51 80.4
arahy.Tifrunner.gnm1.ann1.H559FZ Arachis hypogaea HOM05D001218 ORTHO05D004088 8.6e-18 93.2 51 80.4
Manes.18G001100 Manihot esculenta HOM05D001218 ORTHO05D004088 8.6e-18 93.2 51 80.4
Thecc.08G098300 Theobroma cacao HOM05D001218 ORTHO05D004088 8.6e-18 93.2 52 76.9
GSVIVG01013442001 Vitis vinifera HOM05D001218 ORTHO05D004088 8.6e-18 93.2 51 80.4
Lj4C3G12 Lonicera japonica HOM05D001218 ORTHO05D004088 1.1e-17 92.8 47 89.4
Lalb_Chr17g0338171 Lupinus albus HOM05D001218 ORTHO05D004088 1.1e-17 92.8 51 80.4
PGR031G3703 Punica granatum HOM05D001218 ORTHO05D004088 1.1e-17 92.8 51 80.4
THA.LOC104812017 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 1.1e-17 92.8 50 82.0
Actinidia37903 Actinidia chinensis HOM05D001218 ORTHO05D004088 1.5e-17 92.4 51 80.4
ECA232G2106 Erigeron canadensis HOM05D001218 ORTHO05D004088 1.5e-17 92.4 47 87.2
VMungo1215G2664 Vigna mungo HOM05D001218 ORTHO05D004088 1.5e-17 92.4 51 80.4
BcaB03g12841 Brassica carinata HOM05D001218 ORTHO05D004088 1.9e-17 92.0 50 82.0
BcaC07g39066 Brassica carinata HOM05D001218 ORTHO05D004088 1.9e-17 92.0 50 82.0
A08p29140 Brassica napus HOM05D001218 ORTHO05D004088 1.9e-17 92.0 50 82.0
C08p20520 Brassica napus HOM05D001218 ORTHO05D004088 1.9e-17 92.0 50 82.0
BolC8t49679H Brassica oleracea HOM05D001218 ORTHO05D004088 1.9e-17 92.0 50 82.0
BraA08t34850Z Brassica rapa HOM05D001218 ORTHO05D004088 1.9e-17 92.0 50 82.0
Cpa.g.c24967.5 Carica papaya HOM05D001218 ORTHO05D004088 1.9e-17 92.0 51 78.4
Eucgr.F03611 Eucalyptus grandis HOM05D001218 ORTHO05D004088 1.9e-17 92.0 51 78.4
RcHm_v2.0_Chr7g0217221 Rosa chinensis HOM05D001218 ORTHO05D004088 1.9e-17 92.0 51 76.5
Sp1g18650 Schrenkiella parvula HOM05D001218 ORTHO05D004088 1.9e-17 92.0 50 82.0
CSS0003035 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 2.5e-17 91.7 51 80.4
CsaV3_4G037690 Cucumis sativus L. HOM05D001218 ORTHO05D004088 2.5e-17 91.7 51 76.5
Thhalv10018291m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 2.5e-17 91.7 50 82.0
MBI01_g22962_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 2.5e-17 91.7 51 80.4
MBI04_g42538_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 2.5e-17 91.7 51 80.4
Sp5g31710 Schrenkiella parvula HOM05D001218 ORTHO05D004088 2.5e-17 91.7 50 82.0
Sed0013544 Sechium edule HOM05D001218 ORTHO05D004088 2.5e-17 91.7 51 76.5
Sed0027532 Sechium edule HOM05D001218 ORTHO05D004088 2.5e-17 91.7 51 76.5
AL1G33980 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 3.3e-17 91.3 53 73.6
CAN.G208.42 Capsicum annuum HOM05D001218 ORTHO05D004088 3.3e-17 91.3 51 78.4
Glyma.07G160500 Glycine max HOM05D001218 ORTHO05D004088 3.3e-17 91.3 51 78.4
Nn5g31069 Nelumbo nucifera HOM05D001218 ORTHO05D004088 3.3e-17 91.3 51 76.5
THA.LOC104813730 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 3.3e-17 91.3 50 78.0
HPP92_007461 Vanilla planifolia HOM05D001218 ORTHO05D004088 3.3e-17 91.3 51 78.4
HanXRQChr14g0427931 Helianthus annuus HOM05D001218 ORTHO05D004088 4.3e-17 90.9 46 84.8
Os02g0714200 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 4.3e-17 90.9 51 76.5
Rhsim06G0002000 Rhododendron simsii HOM05D001218 ORTHO05D004088 4.3e-17 90.9 51 80.4
Hund01814 Selenicereus undatus HOM05D001218 ORTHO05D004088 4.3e-17 90.9 54 74.1
Hund01817 Selenicereus undatus HOM05D001218 ORTHO05D004088 4.3e-17 90.9 51 78.4
BcaC05g26002 Brassica carinata HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
BcaC08g47163 Brassica carinata HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
BcaC08g47232 Brassica carinata HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
A06p16940 Brassica napus HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
C05p19600 Brassica napus HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
C06p50810 Brassica napus HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
BolC5t30663H Brassica oleracea HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
BolC6t40103H Brassica oleracea HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
BraA06t24804Z Brassica rapa HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
BraA07t31750Z Brassica rapa HOM05D001218 ORTHO05D004088 5.6e-17 90.5 50 80.0
Ca_12496_v3 Cicer arietinum L. HOM05D001218 ORTHO05D004088 5.6e-17 90.5 51 76.5
DCAR_017621 Daucus carota HOM05D001218 ORTHO05D004088 5.6e-17 90.5 58 72.4
Medtr1g035230 Medicago truncatula HOM05D001218 ORTHO05D004088 5.6e-17 90.5 51 76.5
Nitab4.5_0001309g0150 Nicotiana tabacum HOM05D001218 ORTHO05D004088 5.6e-17 90.5 51 80.4
Nitab4.5_0003423g0060 Nicotiana tabacum HOM05D001218 ORTHO05D004088 5.6e-17 90.5 51 80.4
Oeu042498.1 Olea europaea HOM05D001218 ORTHO05D004088 5.6e-17 90.5 47 87.2
Psat6g131840 Pisum sativum HOM05D001218 ORTHO05D004088 5.6e-17 90.5 51 76.5
Sc02g0009320 Simmondsia chinensis HOM05D001218 ORTHO05D004088 5.6e-17 90.5 55 72.7
EL10Ac1g01822 Beta vulgaris HOM05D001218 ORTHO05D004088 7.3e-17 90.1 51 74.5
AUR62035185 Chenopodium quinoa HOM05D001218 ORTHO05D004088 7.3e-17 90.1 51 74.5
AUR62043319 Chenopodium quinoa HOM05D001218 ORTHO05D004088 7.3e-17 90.1 51 74.5
Phvul.003G009600 Phaseolus vulgaris HOM05D001218 ORTHO05D004088 7.3e-17 90.1 51 76.5
Psat1g072640 Pisum sativum HOM05D001218 ORTHO05D004088 7.3e-17 90.1 57 66.7
Sopen12g031660 Solanum pennellii HOM05D001218 ORTHO05D004088 7.3e-17 90.1 51 78.4
TAR625G0052 Trochodendron aralioides HOM05D001218 ORTHO05D004088 7.3e-17 90.1 51 78.4
Aa31LG7G5130 Aethionema arabicum HOM05D001218 ORTHO05D004088 9.5e-17 89.7 50 78.0
AT1G76550 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 9.5e-17 89.7 50 78.0
DCAR_013949 Daucus carota HOM05D001218 ORTHO05D004088 9.5e-17 89.7 58 70.7
Peaxi162Scf00064g01432 Petunia axillaris HOM05D001218 ORTHO05D004088 9.5e-17 89.7 51 78.4
Solyc04g082880.4 Solanum lycopersicum HOM05D001218 ORTHO05D004088 9.5e-17 89.7 51 74.5
Solyc12g095760.2 Solanum lycopersicum HOM05D001218 ORTHO05D004088 9.5e-17 89.7 51 76.5
Sopen04g036520 Solanum pennellii HOM05D001218 ORTHO05D004088 9.5e-17 89.7 51 74.5
PGSC0003DMG400029309 Solanum tuberosum HOM05D001218 ORTHO05D004088 9.5e-17 89.7 51 76.5
vmacro21744 Vaccinium macrocarpon HOM05D001218 ORTHO05D004088 9.5e-17 89.7 47 85.1
Carub.0002s2346 Capsella rubella HOM05D001218 ORTHO05D004088 1.2e-16 89.4 50 76.0
Psat7g019920 Pisum sativum HOM05D001947 ORTHO05D015328 1.2e-16 89.4 51 76.5
Potri.005G257800 Populus trichocarpa HOM05D001218 ORTHO05D004088 1.2e-16 89.4 51 78.4
Sabra05G0199700 Salix brachista HOM05D001218 ORTHO05D004088 1.2e-16 89.4 51 78.4
AL2G36690 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 1.6e-16 89.0 50 78.0
FvH4_5g26380 Fragaria vesca HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
FAN04G0409 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
FAN08G1986 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
FAN13G0530 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
FAN18G2420 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
Glyma.20G007400 Glycine max HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
Os06g0326400 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
QL02p016004 Quercus lobata HOM05D001218 ORTHO05D004088 1.6e-16 89.0 51 74.5
Actinidia15552 Actinidia chinensis HOM05D001218 ORTHO05D004088 2.1e-16 88.6 51 80.4
CSS0013185 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 2.1e-16 88.6 47 83.0
CiPaw.07G131800 Carya illinoinensis HOM05D001218 ORTHO05D004088 2.1e-16 88.6 51 72.5
PGSC0003DMG400010007 Solanum tuberosum HOM05D001218 ORTHO05D004088 2.1e-16 88.6 51 72.5
TWI12G0956 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 2.1e-16 88.6 51 76.5
TWI36G0968 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 2.1e-16 88.6 51 76.5
MSTRG.24523 Avicennia marina HOM05D001218 ORTHO05D004088 2.8e-16 88.2 47 85.1
Hma1.2p1_0489F.1_g164180 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 2.8e-16 88.2 51 76.5
Lj2g0017094 Lotus japonicus HOM05D001218 ORTHO05D004088 2.8e-16 88.2 51 76.5
Lalb_Chr10g0095321 Lupinus albus HOM05D001218 ORTHO05D004088 2.8e-16 88.2 51 78.4
MD06G1002300 Malus domestica HOM05D001218 ORTHO05D004088 2.8e-16 88.2 51 74.5
TPR.G18596 Trifolium pratense HOM05D001218 ORTHO05D004088 2.8e-16 88.2 51 72.5
TAR628G0316 Trochodendron aralioides HOM05D001218 ORTHO05D004088 2.8e-16 88.2 51 76.5
CiPaw.08G078100 Carya illinoinensis HOM05D001218 ORTHO05D004088 3.6e-16 87.8 50 78.0
Lsat_1_v5_gn_2_3161 Lactuca sativa HOM05D001218 ORTHO05D004088 3.6e-16 87.8 46 82.6
Prupe.5G003400 Prunus persica HOM05D001218 ORTHO05D004088 3.6e-16 87.8 51 76.5
A07p42210 Brassica napus HOM05D001218 ORTHO05D004088 4.7e-16 87.4 50 78.0
Atru.chr13.35 Acer truncatum HOM05D001218 ORTHO05D004088 6.2e-16 87.0 52 69.2
MSTRG.24899 Avicennia marina HOM05D001218 ORTHO05D004088 6.2e-16 87.0 47 80.9
BcaB07g32089 Brassica carinata HOM05D001218 ORTHO05D004088 6.2e-16 87.0 50 78.0
Zm00001eb188910 Zea mays HOM05D001218 ORTHO05D004088 8.1e-16 86.7 52 69.2
CAN.G1330.23 Capsicum annuum HOM05D001218 ORTHO05D004088 1.1e-15 86.3 47 80.9
CARHR070100 Cardamine hirsuta HOM05D001218 ORTHO05D004088 1.1e-15 86.3 50 74.0
HanXRQChr08g0216771 Helianthus annuus HOM05D001218 ORTHO05D004088 1.1e-15 86.3 47 83.0
MSTRG.1008 Avicennia marina HOM05D001218 ORTHO05D004088 1.4e-15 85.9 47 83.0
Nn6g31597 Nelumbo nucifera HOM05D001218 ORTHO05D004088 1.4e-15 85.9 51 72.5
Oeu035766.1 Olea europaea HOM05D000150 ORTHO05D000108 1.4e-15 85.9 47 83.0
Oeu035767.1 Olea europaea HOM05D001218 ORTHO05D004088 1.4e-15 85.9 47 83.0
THA.LOC104804960 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 1.8e-15 85.5 51 72.5
Nitab4.5_0000464g0120 Nicotiana tabacum HOM05D001218 ORTHO05D004088 2.3e-15 85.1 51 74.5
Peaxi162Scf00385g00622 Petunia axillaris HOM05D001218 ORTHO05D004088 2.3e-15 85.1 51 70.6
Psat0s895g0040 Pisum sativum HOM05D002345 ORTHO05D002391 2.3e-15 85.1 51 72.5
ClCG11G019100 Citrullus lanatus HOM05D001218 ORTHO05D004088 3.1e-15 84.7 58 67.2
Lsat_1_v5_gn_8_26721 Lactuca sativa HOM05D001218 ORTHO05D004088 4.0e-15 84.3 47 80.9
Zm00001eb252630 Zea mays HOM05D001218 ORTHO05D004088 4.0e-15 84.3 52 67.3
Psat2g088640 Pisum sativum HOM05D001218 ORTHO05D022830 5.2e-15 84.0 62 59.7
TAR376G0228 Trochodendron aralioides HOM05D001218 ORTHO05D004088 6.8e-15 83.6 51 74.5
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 8.9e-15 83.2 51 72.5
Migut.C00344 Erythranthe guttata HOM05D001218 ORTHO05D004088 1.2e-14 82.8 47 78.7
Migut.N02993 Erythranthe guttata HOM05D001218 ORTHO05D004088 1.2e-14 82.8 47 78.7
Zm00001eb321510 Zea mays HOM05D001218 ORTHO05D022830 1.2e-14 82.8 51 66.7
Os09g0298100 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 4.4e-14 80.9 51 68.6
ATR0605G031 Amborella trichopoda HOM05D001218 ORTHO05D004088 7.5e-14 80.1 51 66.7
Hma1.2p1_0810F.1_g221990 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 7.5e-14 80.1 51 70.6
Lalb_Chr04g0258861 Lupinus albus HOM05D001218 ORTHO05D004088 1.3e-13 79.3 47 72.3
ECA233G0383 Erigeron canadensis HOM05D001218 ORTHO05D004088 1.7e-13 79.0 47 74.5
ATR0057G131 Amborella trichopoda HOM05D001218 ORTHO05D004088 2.2e-13 78.6 45 75.6
MELO3C017063.2 Cucumis melo HOM05D001218 ORTHO05D004088 2.2e-13 78.6 47 70.2
TAR375G0723 Trochodendron aralioides HOM05D001218 ORTHO05D004088 2.2e-13 78.6 51 62.7
VMungo1215G2156 Vigna mungo HOM05D001218 ORTHO05D012808 6.4e-13 77.0 41 80.5
AagrBONN_evm.TU.Sc2ySwM_228.4948 Anthoceros agrestis HOM05D001218 ORTHO05D004088 1.9e-12 75.5 50 66.0
HPP92_003843 Vanilla planifolia HOM05D001218 ORTHO05D004088 2.4e-12 75.1 43 72.1
Nn1g08050 Nelumbo nucifera HOM05D001218 ORTHO05D004088 5.4e-12 73.9 45 71.1
MBI07_g43636_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D022830 9.2e-12 73.2 51 72.5
SEGI_18001 Sequoiadendron giganteum HOM05D001218 ORTHO05D004088 9.2e-12 73.2 50 62.0
HPP92_003839 Vanilla planifolia HOM05D001218 ORTHO05D004088 1.2e-11 72.8 43 69.8
PSO210G1993 Papaver somniferum HOM05D001218 ORTHO05D004088 1.6e-11 72.4 45 66.7
PSO210G6488 Papaver somniferum HOM05D001218 ORTHO05D004088 1.6e-11 72.4 45 66.7
MBI04_g22928_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 3.5e-11 71.2 51 60.8
Psat1g159440 Pisum sativum HOM05D001218 ORTHO05D022830 3.5e-11 71.2 51 64.7
SMO115G0046 Selaginella moellendorffii HOM05D001218 ORTHO05D004088 3.5e-11 71.2 50 62.0
Mapoly0105s0043 Marchantia polymorpha HOM05D001218 ORTHO05D004088 1.0e-10 69.7 50 58.0
Psat1g159120 Pisum sativum HOM05D001218 ORTHO05D022830 3.0e-10 68.2 52 63.5
Os08g0345700 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 5.1e-10 67.4 50 58.0
Zm00001eb043000 Zea mays HOM05D001218 ORTHO05D004088 1.5e-09 65.9 50 56.0
Pp3c18_9850 Physcomitrium patens HOM05D001218 ORTHO05D003142 2.8e-08 61.6 50 52.0
Pp3c21_16140 Physcomitrium patens HOM05D001218 ORTHO05D004088 8.1e-08 60.1 50 50.0
Psat2g088600 Pisum sativum HOM05D001218 ORTHO05D015696 1.8e-07 58.9 38 63.2
ECA233G6219 Erigeron canadensis HOM05D001218 ORTHO05D004088 6.8e-07 57.0 52 57.7
SGA_v2.0_scaffold73G24447 Striga asiatica HOM05D001218 ORTHO05D004088 8.9e-07 56.6 41 56.1
Oeu064732.1 Olea europaea HOM05D001218 ORTHO05D004088 2.0e-06 55.5 30 80.0
Zm00001eb381920 Zea mays HOM05D001218 ORTHO05D004088 7.6e-06 53.5 30 76.7


User provided reference genes

Program Settings