Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 0.0e+00 1221.1 604 100.0
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.7e-252 875.9 616 69.6
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 2.9e-223 778.9 611 66.3
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 2.3e-167 593.2 605 50.6
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 2.1e-165 586.6 615 50.2
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 7.5e-163 578.2 605 49.4
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.1e-158 564.3 607 49.3
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 1.5e-158 563.9 608 48.8
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 2.3e-156 556.6 625 47.7
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 2.2e-154 550.1 608 49.0
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 9.2e-153 544.7 638 47.2
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 8.6e-151 538.1 626 47.6
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 1.9e-150 537.0 623 45.3
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 1.9e-150 537.0 607 47.0
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 2.5e-150 536.6 644 46.4
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.3e-150 536.2 607 47.0
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 5.6e-150 535.4 609 47.1
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 7.3e-150 535.0 629 47.5
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.2e-149 534.3 625 46.2
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.6e-149 533.9 630 47.0
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 6.2e-149 531.9 626 46.6
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 8.1e-149 531.6 607 47.0
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 8.1e-149 531.6 630 46.5
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.8e-148 530.4 610 46.9
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.4e-147 525.8 604 47.0
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 5.8e-147 525.4 626 47.0
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 8.3e-146 521.5 626 46.8
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 4.1e-145 519.2 610 46.4
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 1.6e-144 517.3 609 46.0
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 2.1e-144 516.9 608 45.7
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 7.8e-144 515.0 607 45.8
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.0e-143 514.6 572 48.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 3.9e-143 512.7 641 45.4
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.4e-140 503.4 626 43.9
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 6.8e-140 501.9 611 44.8
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 2.6e-139 500.0 714 42.2
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 8.4e-138 495.0 610 45.1
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 6.0e-136 488.8 611 45.3
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 3.9e-135 486.1 522 48.7
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 6.6e-135 485.3 607 44.8
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 6.6e-135 485.3 610 43.9
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 8.7e-135 485.0 610 46.2
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.5e-134 484.2 618 42.2
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.4e-132 477.6 652 42.0
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.4e-132 476.9 622 42.6
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 4.0e-132 476.1 611 44.2
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 9.0e-132 474.9 605 44.3
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 2.6e-131 473.4 625 42.9
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 7.6e-131 471.9 609 43.8
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 7.6e-131 471.9 616 44.2
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 2.2e-130 470.3 639 41.8
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 4.9e-130 469.2 611 42.4
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 1.4e-129 467.6 611 42.2
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 1.9e-129 467.2 605 43.1
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 1.6e-128 464.2 559 44.9
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.1e-128 463.8 605 43.0
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.1e-128 463.8 605 43.0
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 2.1e-128 463.8 626 41.7
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 3.0e-127 459.9 605 42.6
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 5.1e-127 459.1 689 40.3
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 6.6e-127 458.8 628 39.8
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 8.7e-127 458.4 604 43.5
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 1.1e-126 458.0 611 42.4
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 1.9e-126 457.2 607 42.5
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 7.3e-126 455.3 610 43.1
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 9.6e-126 454.9 613 40.9
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 8.1e-125 451.8 608 42.3
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.4e-124 451.1 610 42.3
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 5.8e-123 445.7 611 41.2
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 2.9e-122 443.4 617 42.1
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 9.3e-121 438.3 622 41.3
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 8.7e-119 431.8 620 41.8
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 1.1e-116 424.9 478 48.7
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.1e-113 414.8 395 53.7
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.0e-111 408.3 487 45.6
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.1e-110 404.8 621 39.8
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 4.6e-104 382.9 651 36.6
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 5.9e-99 365.9 477 43.2
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 4.5e-91 339.7 481 41.6
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.0e-87 328.6 394 45.9
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.1e-86 325.1 324 50.6
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 3.5e-83 313.5 412 42.7
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 1.7e-74 284.6 366 43.4
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 3.8e-74 283.5 317 49.2
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 4.1e-68 263.5 316 46.2
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 2.0e-67 261.2 277 49.5
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 1.0e-63 248.8 277 48.0
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 3.7e-61 240.4 334 40.7
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 7.0e-52 209.5 224 47.8
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 2.7e-51 207.6 549 30.1
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 4.3e-49 200.3 280 45.0
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 6.1e-48 196.4 317 37.2
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 1.4e-47 195.3 289 41.2
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 6.4e-45 186.4 340 36.5
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 2.0e-43 181.4 224 44.6
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 8.0e-40 169.5 231 40.3
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 1.8e-39 168.3 616 26.5
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 2.2e-37 161.4 261 36.8
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.1e-36 159.1 287 35.2
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.4e-28 132.1 160 41.9
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.1e-28 130.6 172 43.6
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 2.3e-26 124.8 152 48.0
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 5.6e-25 120.2 152 43.4
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 6.2e-24 116.7 525 24.4
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 2.6e-22 111.3 362 27.1
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 4.4e-22 110.5 180 36.7
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.7e-21 108.6 118 44.9
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 6.4e-21 106.7 121 43.8
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 5.4e-20 103.6 155 38.1
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 3.9e-18 97.4 123 42.3
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 1.1e-17 95.9 122 45.1
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 9.0e-15 86.3 114 34.2
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 9.9e-14 82.8 113 33.6
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.9e-12 78.6 101 46.5
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 5.4e-12 77.0 163 34.4
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 5.4e-12 77.0 141 34.8
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.6e-11 75.5 109 38.5
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 2.8e-08 64.7 92 39.1
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 2.4e-07 61.6 81 46.9
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 4.0e-07 60.8 119 34.5


User provided reference genes

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