Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-243 845.9 414 100.0
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 2.3e-102 376.7 517 45.6
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 3.0e-94 349.7 510 42.7
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 8.7e-94 348.2 307 59.3
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 5.8e-90 335.5 485 43.3
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-88 330.9 507 45.0
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 6.7e-86 322.0 504 42.7
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 3.4e-82 309.7 514 41.8
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 3.8e-81 306.2 491 40.9
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 9.3e-80 301.6 501 38.7
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 4.6e-79 299.3 504 41.7
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 3.9e-78 296.2 532 39.8
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 3.9e-78 296.2 517 40.8
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 2.5e-77 293.5 526 36.3
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 9.6e-77 291.6 519 37.4
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 7.6e-74 282.0 453 38.0
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 2.9e-73 280.0 481 41.6
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 3.8e-73 279.6 476 40.5
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.4e-73 278.5 519 34.5
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 3.2e-72 276.6 519 35.3
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 3.5e-71 273.1 523 35.0
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 3.0e-70 270.0 525 37.1
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 5.1e-70 269.2 518 36.9
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 6.7e-70 268.9 511 35.8
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.6e-68 264.2 504 36.7
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.7e-68 263.1 503 35.8
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.8e-68 262.7 531 34.5
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 8.2e-68 261.9 524 35.1
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 8.2e-68 261.9 523 33.7
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 2.4e-67 260.4 508 35.0
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.1e-67 259.6 520 35.0
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 5.3e-67 259.2 523 36.3
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.2e-66 258.1 517 33.8
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 1.2e-66 258.1 513 34.7
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 1.5e-66 257.7 518 35.1
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.4e-66 256.5 513 34.3
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 3.4e-66 256.5 499 35.7
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 4.5e-66 256.1 526 34.6
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 5.9e-66 255.8 537 34.5
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 7.6e-66 255.4 525 34.5
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 2.9e-65 253.4 526 35.0
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 3.8e-65 253.1 512 34.2
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.8e-65 253.1 515 34.2
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 5.0e-65 252.7 503 35.4
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 6.5e-65 252.3 524 33.2
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.1e-64 251.5 527 34.0
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 2.5e-64 250.4 508 34.1
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 4.2e-64 249.6 525 34.7
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 7.2e-64 248.8 519 33.1
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 7.2e-64 248.8 531 33.0
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 9.3e-64 248.4 489 34.8
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.2e-63 248.1 524 33.0
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.6e-63 247.7 519 32.9
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 2.1e-63 247.3 506 33.4
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 3.6e-63 246.5 510 34.7
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.0e-62 245.0 528 34.1
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.3e-62 244.6 507 33.5
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 1.8e-62 244.2 526 33.1
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 2.3e-62 243.8 514 33.3
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 3.0e-62 243.4 512 32.0
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 3.0e-62 243.4 529 31.9
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 3.0e-62 243.4 503 32.0
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 5.1e-62 242.7 493 32.9
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 6.7e-62 242.3 509 34.2
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 1.1e-61 241.5 529 33.1
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 2.5e-61 240.4 501 33.5
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 3.3e-61 240.0 561 33.0
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.4e-61 238.8 501 33.7
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 7.4e-61 238.8 502 33.1
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 1.3e-60 238.0 515 33.0
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 1.6e-60 237.7 517 33.1
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 4.8e-60 236.1 491 34.2
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 4.8e-60 236.1 523 32.5
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 6.3e-60 235.7 529 32.1
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 1.8e-59 234.2 507 32.9
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 6.9e-59 232.3 501 33.1
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 9.1e-59 231.9 520 32.7
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 9.1e-59 231.9 505 32.1
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 2.6e-58 230.3 501 32.5
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 5.9e-58 229.2 513 33.3
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 1.0e-57 228.4 506 33.6
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 1.0e-57 228.4 539 31.0
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.3e-57 228.0 510 32.0
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.7e-57 227.6 503 33.6
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.7e-57 227.6 503 33.6
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.7e-57 227.6 503 33.6
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.7e-57 227.6 515 32.4
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.2e-57 227.3 518 33.8
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 1.4e-56 224.6 535 31.4
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 1.4e-56 224.6 510 32.2
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 5.5e-56 222.6 513 33.1
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 5.5e-56 222.6 501 32.9
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.6e-55 219.9 515 31.7
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 3.0e-54 216.9 471 33.1
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 6.7e-54 215.7 475 33.9
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 8.8e-54 215.3 503 33.4
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.5e-53 214.5 416 36.5
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.7e-53 212.6 514 30.9
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 5.7e-53 212.6 134 80.6
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.3e-52 211.5 511 31.7
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.7e-52 211.1 483 31.5
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 3.7e-52 209.9 492 32.1
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 4.8e-52 209.5 514 31.1
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.1e-51 208.4 504 31.7
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 1.8e-51 207.6 520 31.0
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-51 207.6 524 31.3
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 5.3e-51 206.1 503 30.4
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 5.3e-51 206.1 505 31.9
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 6.9e-51 205.7 518 32.0
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 9.1e-51 205.3 523 29.6
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 2.6e-50 203.8 509 31.4
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 3.4e-50 203.4 519 31.4
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 4.5e-50 203.0 506 32.6
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 3.8e-49 199.9 441 35.4
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 5.0e-49 199.5 477 35.2
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 6.5e-49 199.1 506 31.0
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 6.5e-49 199.1 504 31.0
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 6.5e-49 199.1 499 30.7
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 8.5e-49 198.7 507 31.0
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 1.4e-48 198.0 462 30.5
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 1.9e-48 197.6 496 32.1
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 2.5e-48 197.2 510 30.8
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 2.5e-48 197.2 517 31.7
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.2e-47 194.9 535 29.7
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 2.7e-47 193.7 509 30.5
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 4.7e-47 193.0 469 34.5
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 2.3e-46 190.7 467 29.8
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 2.8e-44 183.7 482 31.7
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 4.8e-44 183.0 565 28.1
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 8.2e-44 182.2 506 28.1
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 1.5e-40 171.4 492 29.5
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.9e-40 171.0 515 27.6
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.7e-39 166.4 499 29.3
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 2.0e-37 161.0 168 53.6
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 4.4e-37 159.8 407 30.2
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 4.4e-37 159.8 388 32.7
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.3e-36 158.3 276 37.3
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 2.8e-36 157.1 215 40.5
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.7e-36 156.8 539 27.6
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.8e-35 154.5 506 25.9
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 2.4e-35 154.1 501 26.3
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 2.4e-35 154.1 501 26.3
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 4.5e-34 149.8 497 26.4
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 1.0e-33 148.7 497 26.0
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.5e-32 144.8 398 31.4
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 1.5e-32 144.8 245 38.0
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 4.2e-32 143.3 224 38.4
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 5.5e-32 142.9 226 39.8
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.2e-32 142.5 278 34.9
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 9.4e-32 142.1 229 36.7
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 1.2e-31 141.7 208 40.9
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.7e-31 139.8 396 31.1
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 4.7e-31 139.8 150 50.0
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.8e-30 137.9 222 36.9
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.0e-30 137.1 166 42.8
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 5.2e-30 136.3 124 55.6
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 2.0e-29 134.4 174 48.3
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 2.4e-27 127.5 135 55.6
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.1e-27 126.7 229 38.0
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 9.1e-27 125.6 140 42.9
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 1.6e-26 124.8 208 38.9
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 7.7e-26 122.5 165 38.2
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 7.7e-26 122.5 454 26.7
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.7e-25 121.3 145 46.2
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.0e-25 119.8 217 38.7
HanXRQChr04g0099661 Helianthus annuus HOM05D003325 ORTHO05D003852 5.0e-25 119.8 107 55.1
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 9.5e-24 115.5 118 50.0
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 3.0e-22 110.5 116 49.1
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.0e-22 110.2 130 47.7
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 4.4e-21 106.7 119 49.6
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.1e-16 92.0 220 30.5
MD06G1139000 Malus domestica HOM05D003325 ORTHO05D003852 9.5e-16 89.0 126 38.9
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 3.6e-15 87.0 228 28.1
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 3.6e-15 87.0 228 28.1
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 5.2e-14 83.2 73 54.8
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 2.0e-13 81.3 151 37.7
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 9.8e-13 79.0 76 56.6
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.4e-11 74.3 142 36.6
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 7.0e-11 72.8 113 34.5
Aqoxy2G00205 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 1.7e-09 68.2 68 52.9
Aqoxy1G03157 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 3.0e-09 67.4 68 52.9
Aqoxy1G03342 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 3.0e-09 67.4 68 52.9
ATR0561G235 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.9e-08 64.7 93 41.9
SEGI_12810 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 4.7e-07 60.1 68 47.1
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 8.9e-06 55.8 76 44.7


User provided reference genes

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