Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 4.0e-125 451.4 227 100.0
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 1.7e-99 366.3 227 80.6
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 5.1e-96 354.8 225 77.3
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 1.3e-94 350.1 228 78.5
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 1.3e-94 350.1 225 76.4
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 1.3e-94 350.1 225 76.0
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 1.6e-94 349.7 225 76.9
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.6e-94 349.7 225 77.3
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 2.8e-94 349.0 225 78.7
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 3.6e-94 348.6 225 75.6
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 3.6e-94 348.6 225 77.3
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 6.2e-94 347.8 225 76.0
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 1.1e-93 347.1 225 78.2
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 1.1e-93 347.1 226 76.1
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 1.4e-93 346.7 225 76.9
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 1.8e-93 346.3 226 77.0
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 4.0e-93 345.1 225 75.6
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 1.2e-92 343.6 232 74.6
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 2.0e-92 342.8 227 74.9
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 1.3e-91 340.1 225 75.1
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 1.3e-91 340.1 225 75.1
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 2.2e-91 339.3 225 74.7
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 2.9e-91 339.0 228 73.7
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 3.8e-91 338.6 225 75.1
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 4.9e-91 338.2 225 73.8
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 8.4e-91 337.4 225 76.0
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.4e-90 336.7 225 74.7
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 1.4e-90 336.7 226 74.8
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 1.4e-90 336.7 225 74.7
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 1.4e-90 336.7 227 74.9
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 1.9e-90 336.3 226 74.3
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 1.9e-90 336.3 223 74.0
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 4.2e-90 335.1 225 74.2
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 5.4e-90 334.7 225 72.9
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 5.4e-90 334.7 227 73.6
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 5.4e-90 334.7 223 75.3
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 5.4e-90 334.7 225 74.7
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 5.4e-90 334.7 225 74.7
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 5.4e-90 334.7 225 73.8
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 7.1e-90 334.3 225 73.8
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 7.1e-90 334.3 226 73.9
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 1.2e-89 333.6 225 72.4
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 1.2e-89 333.6 228 74.1
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 1.2e-89 333.6 228 72.8
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 3.5e-89 332.0 228 72.4
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 3.5e-89 332.0 225 73.3
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 3.5e-89 332.0 225 73.3
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 4.6e-89 331.6 225 72.0
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 4.6e-89 331.6 225 72.0
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 4.6e-89 331.6 225 72.0
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 6.0e-89 331.3 223 73.1
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 6.0e-89 331.3 225 72.0
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 7.8e-89 330.9 225 74.7
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 1.0e-88 330.5 226 72.1
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 1.0e-88 330.5 225 72.0
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 1.0e-88 330.5 225 72.0
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 1.3e-88 330.1 225 71.6
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 1.3e-88 330.1 225 71.6
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 3.0e-88 328.9 227 72.7
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 3.9e-88 328.6 251 67.7
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 5.1e-88 328.2 228 71.5
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 1.1e-87 327.0 224 71.9
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 1.1e-87 327.0 225 71.1
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 2.5e-87 325.9 224 73.2
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 3.3e-87 325.5 229 70.3
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 3.3e-87 325.5 225 71.6
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 7.3e-87 324.3 225 69.8
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 9.6e-87 323.9 231 71.9
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 2.8e-86 322.4 210 75.7
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 8.1e-86 320.9 244 67.2
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 1.4e-85 320.1 225 70.7
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 2.4e-85 319.3 260 63.8
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 1.5e-84 316.6 211 74.9
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 5.8e-84 314.7 229 69.0
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 1.3e-83 313.5 208 73.6
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 1.3e-83 313.5 209 75.6
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 3.8e-83 312.0 240 67.5
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 4.9e-83 311.6 234 70.1
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 4.9e-83 311.6 225 68.9
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 2.4e-82 309.3 210 73.3
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 1.6e-81 306.6 210 72.9
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 1.6e-81 306.6 208 72.6
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 2.1e-81 306.2 209 71.8
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 2.1e-81 306.2 230 70.4
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 2.7e-81 305.8 231 65.8
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 6.0e-81 304.7 246 64.6
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 3.9e-80 302.0 224 67.9
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 1.6e-78 296.6 237 67.1
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 5.3e-77 291.6 213 69.0
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 2.6e-76 289.3 225 65.8
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 6.5e-75 284.6 224 67.0
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 7.1e-74 281.2 152 88.2
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 1.2e-73 280.4 239 60.7
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 2.7e-73 279.3 229 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 1.8e-69 266.5 175 70.9
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 1.2e-68 263.8 209 66.0
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 1.2e-68 263.8 176 68.8
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 2.0e-68 263.1 235 59.6
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 4.5e-68 261.9 227 63.9
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 1.3e-67 260.4 176 73.9
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 9.7e-63 244.2 223 58.3
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 6.3e-62 241.5 147 76.2
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 1.2e-60 237.3 208 59.6
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 1.0e-59 234.2 226 54.9
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 1.1e-58 230.7 332 45.2
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 3.6e-57 225.7 145 79.3
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 1.0e-56 224.2 156 71.8
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 1.4e-56 223.8 123 82.9
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 5.1e-56 221.9 162 61.1
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 9.7e-55 217.6 156 68.6
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 4.2e-50 202.2 132 66.7
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 1.7e-43 180.3 178 51.7
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 8.8e-40 167.9 133 61.7
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 1.2e-36 157.5 159 46.5
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 7.2e-26 121.7 63 85.7
SMO199G0092 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 1.6e-25 120.6 86 65.1
SMO361G0344 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 2.3e-24 116.7 63 79.4
Hma1.2p1_0426F.1_g150620 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.2e-23 114.4 68 82.4
Hma1.2p1_0426F.1_g150600 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.7e-22 110.5 90 63.3
MD06G1141700 Malus domestica HOM05D006563 ORTHO05D008154 5.4e-21 105.5 142 44.4
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 3.8e-19 99.4 118 50.0


User provided reference genes

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