Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 2.3e-63 245.7 154 100.0
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 6.2e-45 184.5 153 80.4
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.6e-43 179.1 153 77.8
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 7.3e-30 134.4 97 94.8
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.6e-29 132.1 139 70.5
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.1e-28 129.0 155 65.2
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 6.8e-28 127.9 156 63.5
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.2e-27 127.1 154 63.6
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.5e-27 126.7 117 78.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.6e-27 125.9 138 68.8
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 5.8e-27 124.8 157 64.3
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 7.6e-27 124.4 182 55.5
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.3e-26 123.6 139 70.5
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.7e-26 123.2 97 87.6
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 4.2e-25 118.6 97 84.5
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.6e-24 116.7 136 66.9
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 1.6e-24 116.7 100 82.0
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.6e-24 116.7 155 59.4
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 2.1e-24 116.3 120 71.7
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.1e-24 116.3 119 74.8
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.1e-24 116.3 164 59.1
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.7e-24 115.9 155 60.6
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 4.6e-24 115.2 155 58.7
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.7e-23 113.2 150 62.7
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 2.3e-23 112.8 103 76.7
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 3.0e-23 112.5 100 75.0
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 3.0e-23 112.5 100 80.0
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 5.1e-23 111.7 168 53.0
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 5.1e-23 111.7 154 57.8
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.5e-22 110.2 148 58.8
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 3.3e-22 109.0 161 56.5
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.3e-22 108.6 148 58.1
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 7.3e-22 107.8 117 70.9
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 9.6e-22 107.5 156 59.6
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.8e-21 105.1 129 67.4
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 4.8e-21 105.1 130 66.2
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 8.1e-21 104.4 129 67.4
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.4e-20 103.6 91 81.3
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.4e-20 103.6 91 81.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-20 102.4 99 75.8
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-20 102.4 161 55.3
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-20 102.4 99 75.8
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 5.3e-20 101.7 109 74.3
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 6.9e-20 101.3 96 75.0
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.5e-19 100.1 97 77.3
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 2.0e-19 99.8 150 58.0
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.0e-19 99.8 99 73.7
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 3.4e-19 99.0 158 55.7
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 3.4e-19 99.0 109 72.5
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 4.4e-19 98.6 97 77.3
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 4.4e-19 98.6 162 57.4
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 5.8e-19 98.2 94 81.9
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 7.6e-19 97.8 97 74.2
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 7.6e-19 97.8 154 56.5
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 9.9e-19 97.4 97 75.3
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.3e-18 97.1 97 76.3
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 1.3e-18 97.1 160 53.8
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.7e-18 96.7 124 66.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.7e-18 96.7 97 76.3
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.7e-18 96.7 152 56.6
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 2.2e-18 96.3 118 60.2
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.9e-18 95.9 97 66.0
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.9e-18 95.9 98 66.3
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.9e-18 95.9 95 74.7
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 3.8e-18 95.5 120 66.7
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.1e-17 94.0 86 82.6
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.1e-17 94.0 97 66.0
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.4e-17 93.6 116 65.5
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.9e-17 93.2 97 75.3
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 3.2e-17 92.4 139 61.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 5.4e-17 91.7 99 66.7
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.2e-16 90.5 118 62.7
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.2e-16 90.5 98 73.5
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.2e-16 90.5 99 68.7
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.6e-16 90.1 96 71.9
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.1e-16 89.7 156 51.3
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.1e-16 89.7 86 74.4
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 7.9e-16 87.8 102 72.5
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 7.9e-16 87.8 56 78.6
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.3e-15 87.0 153 51.0
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-15 87.0 118 56.8
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.7e-15 86.7 97 63.9
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.3e-15 86.3 151 51.0
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.3e-15 86.3 96 64.6
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.0e-15 85.9 150 51.3
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.0e-15 85.9 100 64.0
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 3.9e-15 85.5 97 63.9
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.9e-15 85.5 98 71.4
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 5.1e-15 85.1 100 70.0
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 5.1e-15 85.1 152 50.7
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 5.1e-15 85.1 100 62.0
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 2.5e-14 82.8 100 69.0
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.5e-14 82.8 100 69.0
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 4.3e-14 82.0 160 55.6
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.6e-14 81.6 92 65.2
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.6e-14 81.6 93 68.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 7.3e-14 81.3 99 68.7
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 9.6e-14 80.9 96 62.5
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-13 80.5 97 61.9
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.6e-13 80.1 102 60.8
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.6e-13 80.1 159 47.8
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 2.1e-13 79.7 104 58.7
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.1e-13 79.7 92 64.1
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.1e-13 79.7 92 64.1
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.8e-13 79.3 107 57.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 4.8e-13 78.6 99 60.6
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.8e-13 78.6 141 46.8
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 4.8e-13 78.6 102 70.6
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 8.1e-13 77.8 100 67.0
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 8.1e-13 77.8 100 66.0
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.4e-12 77.0 109 64.2
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.4e-12 76.3 92 68.5
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 4.0e-12 75.5 93 62.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 5.3e-12 75.1 93 60.2
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 5.3e-12 75.1 112 50.9
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 5.3e-12 75.1 92 58.7
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 5.3e-12 75.1 112 50.9
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 6.9e-12 74.7 96 65.6
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 9.0e-12 74.3 174 48.3
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 9.0e-12 74.3 94 63.8
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.2e-11 73.9 115 56.5
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.2e-11 73.9 100 64.0
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.0e-11 73.2 92 67.4
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 2.6e-11 72.8 93 59.1
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 4.5e-11 72.0 93 62.4
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 5.8e-11 71.6 113 57.5
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 9.9e-11 70.9 92 62.0
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.3e-10 70.5 96 64.6
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.2e-09 65.9 139 46.0
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.5e-09 65.1 67 68.7
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 7.1e-09 64.7 103 55.3
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.6e-08 63.5 75 65.3
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.5e-08 62.4 63 69.8
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 6.0e-08 61.6 95 62.1
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.0e-08 61.6 92 53.3
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 5.1e-07 58.5 62 69.4
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.1e-07 58.5 100 52.0
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 6.7e-07 58.2 96 53.1
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 8.7e-07 57.8 95 60.0
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.1e-06 57.4 95 50.5
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.1e-06 57.4 83 55.4
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.9e-06 56.6 78 61.5
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.9e-06 56.6 151 44.4
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.3e-06 55.5 127 44.9
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.6e-06 54.3 85 44.7


User provided reference genes

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