Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0407961 Helianthus annuus HOM05D003482 ORTHO05D004194 1.7e-204 715.7 344 100.0
HanXRQChr13g0411841 Helianthus annuus HOM05D003482 ORTHO05D004194 1.1e-158 563.5 336 80.4
HanXRQChr13g0411981 Helianthus annuus HOM05D003482 ORTHO05D004194 1.5e-155 553.1 346 78.3
HanXRQChr13g0412011 Helianthus annuus HOM05D003482 ORTHO05D004194 1.1e-147 526.9 338 74.9
HanXRQChr13g0412001 Helianthus annuus HOM05D003482 ORTHO05D004194 1.9e-147 526.2 319 80.6
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 5.8e-144 514.6 378 67.5
HanXRQChr03g0082881 Helianthus annuus HOM05D003482 ORTHO05D004194 2.9e-143 512.3 378 66.9
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 1.6e-141 506.5 376 66.0
Lsat_1_v5_gn_5_59000 Lactuca sativa HOM05D003482 ORTHO05D004194 7.6e-136 487.6 354 68.4
HanXRQChr03g0082871 Helianthus annuus HOM05D003482 ORTHO05D004194 1.7e-135 486.5 359 67.7
Lsat_1_v5_gn_5_58881 Lactuca sativa HOM05D003482 ORTHO05D004194 5.4e-134 481.5 362 65.7
ECA240G4147 Erigeron canadensis HOM05D003482 ORTHO05D004194 5.1e-132 474.9 352 67.9
ECA240G0557 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.8e-130 469.2 338 67.8
ECA240G0756 Erigeron canadensis HOM05D003482 ORTHO05D004194 5.3e-129 464.9 352 66.2
ECA240G2590 Erigeron canadensis HOM05D003482 ORTHO05D004194 9.0e-129 464.2 345 66.1
Lsat_1_v5_gn_5_60380 Lactuca sativa HOM05D003482 ORTHO05D004194 2.0e-128 463.0 371 61.2
Lsat_1_v5_gn_5_58921 Lactuca sativa HOM05D003482 ORTHO05D004194 7.6e-128 461.1 354 65.5
Lsat_1_v5_gn_5_58361 Lactuca sativa HOM05D003482 ORTHO05D004194 3.8e-127 458.8 364 62.9
Lsat_1_v5_gn_5_60400 Lactuca sativa HOM05D003482 ORTHO05D004194 4.2e-126 455.3 354 63.8
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 9.3e-118 427.6 354 59.0
ECA240G2186 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.0e-116 422.5 328 66.2
Lsat_1_v5_gn_5_60480 Lactuca sativa HOM05D003482 ORTHO05D004194 4.8e-114 415.2 339 61.4
Lsat_1_v5_gn_5_60420 Lactuca sativa HOM05D003482 ORTHO05D004194 1.4e-110 403.7 352 58.5
Cfa013321 Carpinus fangiana HOM05D003482 ORTHO05D004194 2.1e-109 399.8 424 51.9
ECA240G3793 Erigeron canadensis HOM05D003482 ORTHO05D004194 6.1e-109 398.3 327 62.1
Psat6g006000 Pisum sativum HOM05D003482 ORTHO05D004194 2.3e-108 396.4 401 51.1
TWI34G0517 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 3.0e-108 396.0 356 57.0
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 6.7e-108 394.8 418 50.5
Atru.chr7.2677 Acer truncatum HOM05D003482 ORTHO05D004194 1.5e-107 393.7 408 51.7
Ciclev10007354m.g Citrus clementina HOM05D003482 ORTHO05D004194 2.0e-107 393.3 421 50.8
MBI13_g31548_MAGBIO Magnolia biondii HOM05D003482 ORTHO05D004194 2.8e-106 389.4 397 51.9
Actinidia14155 Actinidia chinensis HOM05D003482 ORTHO05D004194 8.2e-106 387.9 415 48.9
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 1.1e-105 387.5 426 48.1
Potri.006G276600 Populus trichocarpa HOM05D003482 ORTHO05D004194 1.4e-105 387.1 422 49.3
Aa31LG11G4020 Aethionema arabicum HOM05D003482 ORTHO05D004194 1.8e-105 386.7 413 50.1
COL.COLO4_18622 Corchorus olitorius HOM05D003482 ORTHO05D004194 2.4e-105 386.3 363 54.3
Dinv11875 Davidia involucrata HOM05D003482 ORTHO05D004194 2.4e-105 386.3 418 49.8
Eucgr.C03989 Eucalyptus grandis HOM05D003482 ORTHO05D004194 2.4e-105 386.3 412 51.0
Manes.16G137200 Manihot esculenta HOM05D003482 ORTHO05D004194 5.3e-105 385.2 382 51.6
PGR044G0156 Punica granatum HOM05D003482 ORTHO05D004194 5.3e-105 385.2 391 52.2
BcaC03g17943 Brassica carinata HOM05D003482 ORTHO05D004194 6.9e-105 384.8 398 50.3
BraA02t08971Z Brassica rapa HOM05D003482 ORTHO05D004194 6.9e-105 384.8 398 50.3
AL6G36450 Arabidopsis lyrata HOM05D003482 ORTHO05D004194 9.1e-105 384.4 413 48.7
A02p40080 Brassica napus HOM05D003482 ORTHO05D004194 9.1e-105 384.4 399 50.1
Lalb_Chr14g0362391 Lupinus albus HOM05D003482 ORTHO05D004194 1.2e-104 384.0 399 51.1
QL12p026010 Quercus lobata HOM05D003482 ORTHO05D004194 1.2e-104 384.0 421 49.4
CiPaw.07G208900 Carya illinoinensis HOM05D003482 ORTHO05D004194 1.5e-104 383.6 420 49.3
C02p60040 Brassica napus HOM05D003482 ORTHO05D004194 2.0e-104 383.3 398 50.3
COL.COLO4_18624 Corchorus olitorius HOM05D003482 ORTHO05D004194 2.0e-104 383.3 410 49.8
BolC2t12059H Brassica oleracea HOM05D003482 ORTHO05D004194 2.6e-104 382.9 398 50.0
Carub.0006s2266 Capsella rubella HOM05D003482 ORTHO05D004194 2.6e-104 382.9 419 49.4
CARHR188650 Cardamine hirsuta HOM05D003482 ORTHO05D004194 2.6e-104 382.9 415 48.4
FvH4_2g36370 Fragaria vesca HOM05D003482 ORTHO05D004194 2.6e-104 382.9 406 51.7
DCAR_004550 Daucus carota HOM05D003482 ORTHO05D004194 3.4e-104 382.5 420 48.1
BcaB07g29924 Brassica carinata HOM05D003482 ORTHO05D004194 7.7e-104 381.3 400 50.2
Thhalv10003586m.g Eutrema salsugineum HOM05D003482 ORTHO05D004194 7.7e-104 381.3 409 49.4
Phvul.001G077100 Phaseolus vulgaris HOM05D003482 ORTHO05D004194 7.7e-104 381.3 403 49.1
Lj1g0006594 Lotus japonicus HOM05D003482 ORTHO05D004194 1.3e-103 380.6 402 49.8
Prupe.1G455100 Prunus persica HOM05D003482 ORTHO05D004194 1.3e-103 380.6 402 51.0
Ca_12826_v3 Cicer arietinum L. HOM05D003482 ORTHO05D004194 1.7e-103 380.2 406 49.8
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 1.7e-103 380.2 373 54.2
BraA06t26483Z Brassica rapa HOM05D003482 ORTHO05D004194 2.9e-103 379.4 409 49.1
Lsat_1_v5_gn_5_60580 Lactuca sativa HOM05D003482 ORTHO05D004194 2.9e-103 379.4 467 46.9
PSO596G0002 Papaver somniferum HOM05D003482 ORTHO05D004194 1.1e-102 377.5 399 50.4
TAR506G0002 Trochodendron aralioides HOM05D003482 ORTHO05D004194 1.1e-102 377.5 419 49.4
A06p35580 Brassica napus HOM05D003482 ORTHO05D004194 1.4e-102 377.1 409 48.9
Thecc.09G004000 Theobroma cacao HOM05D003482 ORTHO05D004194 1.9e-102 376.7 409 48.9
C07p42960 Brassica napus HOM05D003482 ORTHO05D004194 2.5e-102 376.3 410 48.0
BolC7t44825H Brassica oleracea HOM05D003482 ORTHO05D004194 2.5e-102 376.3 410 48.0
Haze_21807 Corylus avellana HOM05D003482 ORTHO05D004194 2.5e-102 376.3 450 48.2
VMungo0647G1298 Vigna mungo HOM05D003482 ORTHO05D004194 2.5e-102 376.3 403 48.1
Aqoxy7G02727 Aquilegia oxysepala HOM05D003482 ORTHO05D004194 3.2e-102 375.9 414 49.3
PSO423G0073 Papaver somniferum HOM05D003482 ORTHO05D004194 3.2e-102 375.9 399 50.1
Sabra18G0008800 Salix brachista HOM05D003482 ORTHO05D004194 3.2e-102 375.9 424 48.1
AT5G24810 Arabidopsis thaliana HOM05D003482 ORTHO05D004194 4.2e-102 375.6 409 48.7
Duzib168G0916 Durio zibethinus HOM05D003482 ORTHO05D004194 4.2e-102 375.6 401 49.6
SGA_v2.0_scaffold27G11648 Striga asiatica HOM05D003482 ORTHO05D004194 7.2e-102 374.8 394 51.3
Sp2g22640 Schrenkiella parvula HOM05D003482 ORTHO05D004194 9.4e-102 374.4 416 48.3
Nitab4.5_0000970g0010 Nicotiana tabacum HOM05D003482 ORTHO05D004194 1.2e-101 374.0 403 48.9
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 1.6e-101 373.6 412 49.0
CsaV3_3G047320 Cucumis sativus L. HOM05D003482 ORTHO05D004194 1.6e-101 373.6 410 49.0
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 2.7e-101 372.9 399 48.4
PGSC0003DMG400029592 Solanum tuberosum HOM05D003482 ORTHO05D004194 3.6e-101 372.5 399 48.4
Cpa.g.sc328.6 Carica papaya HOM05D003482 ORTHO05D004194 4.7e-101 372.1 410 49.0
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 6.1e-101 371.7 394 50.8
Gohir.D05G068400 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.0e-100 370.9 400 49.2
Gorai.009G069300 Gossypium raimondii HOM05D003482 ORTHO05D004194 1.0e-100 370.9 400 49.2
Glyma.14G139800 Glycine max HOM05D003482 ORTHO05D004194 1.4e-100 370.5 404 48.5
Manes.03G001800 Manihot esculenta HOM05D003482 ORTHO05D004194 1.4e-100 370.5 403 48.6
Sed0005804 Sechium edule HOM05D003482 ORTHO05D004194 5.1e-100 368.6 421 48.0
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 6.7e-100 368.2 329 56.5
Gohir.A05G066000 Gossypium hirsutum HOM05D003482 ORTHO05D004194 6.7e-100 368.2 400 49.0
Sabra06G0214300 Salix brachista HOM05D003482 ORTHO05D004194 6.7e-100 368.2 411 49.9
Glyma.17G188300 Glycine max HOM05D003482 ORTHO05D004194 8.8e-100 367.9 405 47.9
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 8.8e-100 367.9 453 45.7
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 1.5e-99 367.1 453 45.7
TAR626G0827 Trochodendron aralioides HOM05D003482 ORTHO05D004194 1.5e-99 367.1 407 49.1
Hund03269 Selenicereus undatus HOM05D003482 ORTHO05D004194 2.0e-99 366.7 418 48.1
Sc14g0002010 Simmondsia chinensis HOM05D003482 ORTHO05D004194 2.0e-99 366.7 395 49.9
CANSAT25G1343 Cannabis sativa HOM05D003482 ORTHO05D004194 2.6e-99 366.3 422 47.4
Lj7C753G1 Lonicera japonica HOM05D003482 ORTHO05D004194 2.6e-99 366.3 454 45.6
MD08G1123100 Malus domestica HOM05D003482 ORTHO05D004194 1.3e-98 364.0 417 48.7
BcaNung01256 Brassica carinata HOM05D003482 ORTHO05D004194 2.8e-98 362.8 396 49.5
FAN27G0167 Fragaria x ananassa HOM05D003482 ORTHO05D004194 4.8e-98 362.1 351 53.8
Peaxi162Scf00213g01025 Petunia axillaris HOM05D003482 ORTHO05D004194 4.8e-98 362.1 403 47.6
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 8.2e-98 361.3 402 47.5
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 8.2e-98 361.3 414 48.3
FvH4_2g36372 Fragaria vesca HOM05D003482 ORTHO05D004194 1.4e-97 360.5 351 53.6
Nn8g40986 Nelumbo nucifera HOM05D003482 ORTHO05D004194 7.0e-97 358.2 417 47.5
Hund19390 Selenicereus undatus HOM05D003482 ORTHO05D004194 7.0e-97 358.2 412 48.1
ATR0626G323 Amborella trichopoda HOM05D003482 ORTHO05D004194 2.0e-96 356.7 387 48.8
RcHm_v2.0_Chr6g0305511 Rosa chinensis HOM05D003482 ORTHO05D004194 3.5e-96 355.9 383 50.9
Rhsim07G0170800 Rhododendron simsii HOM05D003482 ORTHO05D004194 4.5e-96 355.5 404 48.5
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 7.7e-96 354.8 404 47.3
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 1.7e-95 353.6 386 49.0
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 1.7e-95 353.6 386 49.0
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 1.2e-93 347.4 407 46.4
EL10Ac2g03705 Beta vulgaris HOM05D003482 ORTHO05D004194 1.8e-89 333.6 414 46.6
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 3.8e-87 325.9 405 45.7
FAN15G0261 Fragaria x ananassa HOM05D003482 ORTHO05D004194 2.5e-86 323.2 405 45.4
Pp3c5_19100 Physcomitrium patens HOM05D003482 ORTHO05D004194 5.5e-86 322.0 401 44.6
arahy.Tifrunner.gnm1.ann1.N6E37M Arachis hypogaea HOM05D003482 ORTHO05D004194 7.2e-86 321.6 409 42.5
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 1.0e-84 317.8 463 41.3
Pp3c16_18060 Physcomitrium patens HOM05D003482 ORTHO05D004194 2.0e-83 313.5 404 44.3
TPR.G12040 Trifolium pratense HOM05D003482 ORTHO05D004194 3.7e-82 309.3 397 44.8
arahy.Tifrunner.gnm1.ann1.21Z9DD Arachis hypogaea HOM05D003482 ORTHO05D004194 6.3e-82 308.5 409 41.8
MD15G1102100 Malus domestica HOM05D003482 ORTHO05D004194 3.1e-81 306.2 376 47.9
AagrBONN_evm.TU.Sc2ySwM_228.3219 Anthoceros agrestis HOM05D003482 ORTHO05D004194 5.9e-80 302.0 372 43.5
Medtr1g008980 Medicago truncatula HOM05D003482 ORTHO05D004194 1.3e-79 300.8 230 61.7
Lalb_Chr22g0361011 Lupinus albus HOM05D003482 ORTHO05D004194 1.5e-78 297.4 237 62.9
Mapoly0007s0194 Marchantia polymorpha HOM05D003482 ORTHO05D004194 3.6e-77 292.7 405 42.7
SMO353G0164 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 1.8e-76 290.4 371 44.2
AagrBONN_evm.TU.Sc2ySwM_228.3217 Anthoceros agrestis HOM05D003482 ORTHO05D004194 2.3e-76 290.0 358 43.0
Lsat_1_v5_gn_6_15541 Lactuca sativa HOM05D003482 ORTHO05D004194 4.4e-75 285.8 384 43.0
MD15G1100800 Malus domestica HOM05D003482 ORTHO05D004194 3.7e-74 282.7 368 45.4
SMO353G0165 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 1.5e-70 270.8 383 42.3
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 2.8e-69 266.5 349 45.0
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 3.5e-64 249.6 395 38.5
ECA240G1043 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.0e-63 248.1 209 63.2
CSS0039275 Camellia sinensis var. sinensis HOM05D003482 ORTHO05D004194 1.1e-57 228.0 146 69.9
Oeu059294.1 Olea europaea HOM05D003482 ORTHO05D004194 1.2e-53 214.5 131 70.2
vmacro05100 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 8.1e-53 211.8 131 68.7
Nitab4.5_0000919g0060 Nicotiana tabacum HOM05D003482 ORTHO05D004194 5.2e-52 209.1 133 66.2
Potri.018G004500 Populus trichocarpa HOM05D003482 ORTHO05D004194 8.9e-52 208.4 171 60.2
SEGI_21174 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 2.2e-50 203.8 309 41.7
GSVIVG01035556001 Vitis vinifera HOM05D003482 ORTHO05D004194 2.7e-48 196.8 125 68.8
vmacro05099 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 8.6e-47 191.8 279 43.4
CBR_g4189 Chara braunii HOM05D003482 ORTHO05D004194 3.4e-43 179.9 144 52.1
Oeu059293.1 Olea europaea HOM05D003482 ORTHO05D004194 1.1e-38 164.9 214 43.0
Potri.018G003600 Populus trichocarpa HOM05D003482 ORTHO05D004194 4.7e-37 159.5 98 70.4
Cc00_g11230 Coffea canephora HOM05D003482 ORTHO05D004194 1.5e-35 154.5 249 39.4
Sabra18G0005800 Salix brachista HOM05D003482 ORTHO05D004194 4.6e-32 142.9 202 42.6
Sabra18G0007800 Salix brachista HOM05D003482 ORTHO05D004194 4.6e-32 142.9 202 42.6
PSO832G2792 Papaver somniferum HOM05D003482 ORTHO05D004194 2.5e-30 137.1 217 41.0
SEGI_21512 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 6.2e-29 132.5 98 55.1
Lalb_Chr22g0361021 Lupinus albus HOM05D003482 ORTHO05D004194 2.2e-26 124.0 117 51.3
Nitab4.5_0000502g0210 Nicotiana tabacum HOM05D003482 ORTHO05D019565 1.1e-25 121.7 104 53.8
Sabra18G0012500 Salix brachista HOM05D000009 ORTHO05D000008 2.3e-23 114.0 77 67.5
Lsat_1_v5_gn_5_60340 Lactuca sativa HOM05D003482 ORTHO05D004194 1.4e-17 94.7 58 72.4
Solyc08g074280.4 Solanum lycopersicum HOM05D003482 ORTHO05D004194 3.2e-17 93.6 55 65.5
PSO058G0001 Papaver somniferum HOM05D003482 ORTHO05D004194 1.3e-15 88.2 64 64.1
Lsat_1_v5_gn_5_60320 Lactuca sativa HOM05D003482 ORTHO05D004194 1.6e-13 81.3 88 54.5
Lsat_1_v5_gn_7_104720 Lactuca sativa HOM05D003482 ORTHO05D004194 2.1e-13 80.9 61 52.5
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 5.3e-12 76.3 76 55.3
Os06g0701300 Oryza sativa ssp. japonica HOM05D003482 ORTHO05D004194 2.6e-11 73.9 43 69.8
CDE05G2143 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 4.9e-10 69.7 104 46.2
CBR_g40631 Chara braunii HOM05D002830 ORTHO05D002258 1.6e-08 64.7 182 26.9
Cre03.g186250 Chlamydomonas reinhardtii HOM05D012891 ORTHO05D014812 2.5e-06 57.4 115 28.7


User provided reference genes

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