Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0403611 Helianthus annuus HOM05D003325 ORTHO05D003852 7.3e-86 320.5 157 100.0
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 8.8e-47 190.7 104 89.4
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 2.0e-46 189.5 104 90.4
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 6.7e-31 137.9 101 69.3
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.0e-30 136.3 104 67.3
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 3.3e-30 135.6 105 65.7
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 4.4e-30 135.2 104 67.3
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 5.7e-30 134.8 102 63.7
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-27 127.1 116 57.8
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 7.2e-25 117.9 100 58.0
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 1.7e-21 106.7 114 49.1
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 1.1e-20 104.0 113 48.7
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-20 103.6 104 52.9
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 5.4e-20 101.7 112 50.0
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 7.0e-20 101.3 113 50.4
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 7.0e-20 101.3 113 45.1
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 9.1e-20 100.9 113 45.1
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 7.7e-19 97.8 112 44.6
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 7.7e-19 97.8 103 48.5
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 1.0e-18 97.4 111 45.0
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.7e-18 96.7 113 42.5
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.9e-18 95.9 114 44.7
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 1.1e-17 94.0 137 40.1
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.1e-17 94.0 112 40.2
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 1.9e-17 93.2 112 42.9
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 4.2e-17 92.0 112 44.6
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 4.2e-17 92.0 114 44.7
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 4.2e-17 92.0 90 53.3
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 4.2e-17 92.0 112 43.8
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.2e-16 90.5 112 42.9
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 2.8e-16 89.4 112 46.4
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.8e-16 89.4 111 44.1
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 4.7e-16 88.6 106 42.5
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 6.1e-16 88.2 116 42.2
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 6.1e-16 88.2 111 42.3
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 8.0e-16 87.8 112 42.0
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.0e-15 87.4 113 42.5
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.4e-15 87.0 113 41.6
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.8e-15 86.7 113 41.6
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.3e-15 86.3 116 44.0
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 3.0e-15 85.9 106 43.4
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 4.0e-15 85.5 163 35.6
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 5.2e-15 85.1 111 44.1
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 5.2e-15 85.1 120 38.3
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 6.8e-15 84.7 114 44.7
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 6.8e-15 84.7 115 43.5
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.9e-15 84.3 163 35.0
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 8.9e-15 84.3 163 35.0
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 8.9e-15 84.3 107 40.2
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.2e-14 84.0 114 39.5
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-14 84.0 110 42.7
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.2e-14 84.0 114 43.9
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.2e-14 84.0 114 42.1
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.0e-14 83.2 108 40.7
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 2.0e-14 83.2 116 42.2
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.0e-14 83.2 113 38.9
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 2.0e-14 83.2 113 38.9
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.0e-14 83.2 131 40.5
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 2.6e-14 82.8 114 43.0
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 2.6e-14 82.8 114 43.0
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 2.6e-14 82.8 115 40.9
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.4e-14 82.4 109 40.4
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 3.4e-14 82.4 123 39.8
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 3.4e-14 82.4 116 38.8
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 4.4e-14 82.0 115 40.9
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 5.7e-14 81.6 114 41.2
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 9.8e-14 80.9 109 44.0
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 9.8e-14 80.9 114 40.4
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 2.2e-13 79.7 130 39.2
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.8e-13 79.3 109 43.1
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 2.8e-13 79.3 112 40.2
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 4.9e-13 78.6 114 42.1
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 4.9e-13 78.6 115 42.6
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 4.9e-13 78.6 112 39.3
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 8.3e-13 77.8 114 43.0
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.1e-12 77.4 117 43.6
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 1.8e-12 76.6 115 37.4
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 2.4e-12 76.3 113 38.1
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.4e-12 76.3 119 38.7
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.1e-12 75.9 114 41.2
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.1e-12 75.9 114 41.2
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 3.1e-12 75.9 109 41.3
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.1e-12 75.9 109 38.5
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.4e-12 75.1 106 39.6
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 5.4e-12 75.1 114 39.5
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 9.2e-12 74.3 115 35.7
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 9.2e-12 74.3 122 39.3
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 9.2e-12 74.3 109 40.4
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.0e-11 73.2 118 35.6
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 2.0e-11 73.2 109 38.5
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 2.7e-11 72.8 112 39.3
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.7e-11 72.8 117 36.8
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 4.5e-11 72.0 109 39.4
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 5.9e-11 71.6 112 37.5
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 5.9e-11 71.6 115 40.9
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 1.0e-10 70.9 83 48.2
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 1.3e-10 70.5 119 37.0
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 1.3e-10 70.5 60 51.7
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.3e-10 70.5 109 37.6
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.3e-10 70.5 113 35.4
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.7e-10 70.1 115 39.1
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.7e-10 70.1 115 39.1
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 1.7e-10 70.1 114 35.1
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.3e-10 69.7 114 37.7
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 2.3e-10 69.7 109 37.6
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 3.8e-10 68.9 101 39.6
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 5.0e-10 68.6 114 40.4
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 6.6e-10 68.2 113 38.1
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.9e-09 66.6 110 40.0
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.9e-09 66.6 117 36.8
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 4.3e-09 65.5 115 36.5
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 4.3e-09 65.5 112 37.5
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 4.3e-09 65.5 114 32.5
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.6e-08 63.5 78 46.2
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.1e-08 63.2 105 38.1
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 2.8e-08 62.8 112 36.6
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.8e-08 62.8 118 33.9
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 3.6e-08 62.4 88 43.2
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 4.7e-08 62.0 78 41.0
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 1.0e-07 60.8 112 33.0
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.0e-07 60.8 107 30.8
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 2.3e-07 59.7 113 38.1
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 6.8e-07 58.2 112 31.2
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 8.9e-07 57.8 82 37.8
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 1.2e-06 57.4 112 31.2
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 3.4e-06 55.8 80 41.2
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 7.5e-06 54.7 113 32.7


User provided reference genes

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