Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 6.0e-107 391.0 213 100.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.9e-93 344.7 217 84.3
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 4.3e-89 331.6 179 91.6
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 4.8e-88 328.2 188 88.3
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 5.5e-84 314.7 215 75.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.9e-81 306.2 208 75.5
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 5.7e-81 304.7 205 75.1
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 3.7e-80 302.0 182 78.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.7e-80 302.0 189 78.3
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.4e-79 300.1 199 75.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.8e-79 299.7 182 80.2
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.8e-79 299.7 180 78.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.4e-79 299.3 180 81.1
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.1e-79 298.9 182 80.2
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.1e-79 298.9 182 80.2
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.1e-79 298.5 203 73.9
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 5.3e-79 298.1 189 77.2
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 5.3e-79 298.1 206 73.8
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.3e-79 298.1 197 74.6
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-78 296.6 182 79.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.5e-78 295.0 180 79.4
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 5.8e-78 294.7 181 77.9
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.0e-77 293.9 180 78.9
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.0e-77 293.9 181 79.0
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.7e-77 293.1 175 81.1
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.9e-77 292.4 171 81.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.8e-77 292.0 180 80.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.8e-77 292.0 180 79.4
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.8e-77 292.0 181 75.7
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 5.0e-77 291.6 175 80.6
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 5.0e-77 291.6 180 77.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 5.0e-77 291.6 184 79.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.1e-76 290.4 180 77.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 5.5e-76 288.1 184 78.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 5.5e-76 288.1 180 75.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.2e-76 287.7 202 72.8
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 9.3e-76 287.3 179 79.3
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 9.3e-76 287.3 210 71.9
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 9.3e-76 287.3 179 79.3
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 9.3e-76 287.3 201 70.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 9.3e-76 287.3 213 69.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-75 287.0 195 74.9
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.2e-75 287.0 186 78.0
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.6e-75 286.6 186 78.0
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-75 286.6 216 70.8
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.1e-75 286.2 200 78.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.1e-75 286.2 184 77.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.1e-75 286.2 210 70.5
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.7e-75 285.8 186 77.4
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.5e-75 285.4 184 78.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.6e-75 285.0 184 78.3
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 4.6e-75 285.0 179 79.3
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 6.1e-75 284.6 186 77.4
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.1e-75 284.6 181 75.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 7.9e-75 284.3 180 75.6
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 7.9e-75 284.3 156 87.2
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.3e-74 283.5 186 77.4
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.8e-74 283.1 186 76.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 3.0e-74 282.3 207 71.0
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.0e-74 282.3 179 74.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.0e-74 282.3 179 74.9
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.0e-74 282.3 186 75.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 3.9e-74 282.0 181 76.8
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.1e-74 281.6 181 74.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 6.7e-74 281.2 181 77.3
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.1e-73 280.4 181 75.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 9.7e-73 277.3 199 68.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 2.8e-72 275.8 180 77.2
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.8e-72 275.8 181 74.6
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.7e-72 275.4 174 75.3
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.8e-72 275.0 182 73.1
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 6.3e-72 274.6 180 75.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 8.2e-72 274.2 208 69.2
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.4e-71 272.7 208 71.2
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.0e-70 269.6 208 70.2
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.0e-70 269.6 208 69.7
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 2.0e-70 269.6 196 69.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.6e-70 269.2 208 70.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.6e-70 269.2 180 70.6
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.4e-70 268.9 158 81.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 3.4e-70 268.9 203 70.4
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.3e-69 266.9 290 52.8
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.9e-69 265.8 203 68.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.9e-69 265.8 180 71.7
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.8e-69 265.4 182 73.1
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 8.5e-69 264.2 225 64.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.9e-68 263.1 182 72.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.5e-68 262.7 182 70.9
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 9.4e-68 260.8 175 73.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.2e-67 260.4 205 66.3
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.1e-67 259.6 208 66.3
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.7e-67 259.2 208 66.3
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.1e-67 258.1 182 70.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 7.9e-67 257.7 182 70.3
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-66 257.3 208 65.9
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.0e-66 257.3 178 72.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.4e-66 256.9 180 68.9
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-66 256.5 182 70.9
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 5.1e-66 255.0 182 69.2
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.7e-66 254.6 184 69.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.0e-65 253.1 206 62.1
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.0e-65 253.1 180 71.1
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.5e-65 252.7 180 68.9
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.5e-65 252.7 180 68.9
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.5e-65 252.7 183 67.8
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 5.7e-65 251.5 208 61.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.4e-65 251.1 161 75.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 7.4e-65 251.1 180 66.7
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 9.7e-65 250.8 214 64.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 9.7e-65 250.8 174 70.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.2e-64 249.6 214 63.6
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 3.7e-64 248.8 180 66.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 6.3e-64 248.1 179 69.8
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 8.2e-64 247.7 180 69.4
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-63 246.9 184 69.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.4e-63 246.1 182 68.1
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.4e-63 246.1 170 68.8
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.1e-63 245.7 165 74.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.0e-61 238.4 148 77.0
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.1e-60 237.3 182 66.5
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-58 230.3 184 67.4
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.2e-54 217.2 143 75.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 7.7e-54 214.5 123 83.7
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.7e-53 213.4 124 81.5
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.2e-51 207.2 171 59.6
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.7e-51 205.3 186 62.4
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.0e-51 204.5 123 80.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.8e-48 196.1 152 66.4
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.7e-46 189.5 120 75.8
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 5.9e-46 188.3 180 57.8
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 7.7e-46 188.0 170 54.1
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 9.4e-44 181.0 162 54.9
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.6e-43 179.1 150 55.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.8e-42 176.8 97 85.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 4.0e-42 175.6 170 58.8
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-41 174.1 182 54.4
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.4e-41 172.2 105 80.0
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.7e-38 162.9 95 81.1
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.0e-37 161.0 154 54.5
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.1e-35 153.3 172 47.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 5.2e-34 148.7 149 47.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 9.8e-33 144.4 106 70.8
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.8e-32 142.9 170 50.0
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 3.1e-18 96.3 98 57.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 5.2e-18 95.5 55 76.4
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.8e-18 95.1 191 35.6
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 8.9e-18 94.7 59 72.9
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 3.4e-17 92.8 146 36.3
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.9e-16 89.7 68 60.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 6.4e-16 88.6 67 59.7
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 7.0e-15 85.1 190 34.7
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-11 74.3 47 76.6
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.8e-10 70.5 40 82.5
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.2e-10 68.9 56 60.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 5.8e-09 65.5 93 41.9
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 3.5e-06 56.2 36 75.0


User provided reference genes

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