Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0400551 Helianthus annuus HOM05D007206 ORTHO05D009176 2.5e-101 372.1 184 100.0
ECA233G5177 Erigeron canadensis HOM05D007206 ORTHO05D009176 4.6e-87 324.7 184 80.4
Lsat_1_v5_gn_6_28201 Lactuca sativa HOM05D007206 ORTHO05D009176 1.2e-76 290.0 185 73.0
Hma1.2p1_0564F.1_g179170 Hydrangea macrophylla HOM05D007206 ORTHO05D009176 3.9e-62 241.9 181 61.3
Cc06_g04800 Coffea canephora HOM05D007206 ORTHO05D009176 9.6e-61 237.3 181 58.6
Oeu017000.1 Olea europaea HOM05D007206 ORTHO05D009176 9.9e-58 227.3 180 58.3
DCAR_017648 Daucus carota HOM05D007206 ORTHO05D009176 1.4e-56 223.4 158 62.0
Migut.J00478 Erythranthe guttata HOM05D007206 ORTHO05D009176 7.1e-56 221.1 182 53.8
Actinidia32469 Actinidia chinensis HOM05D007206 ORTHO05D009176 1.6e-55 219.9 160 61.2
SGA_v2.0_scaffold657G53380 Striga asiatica HOM05D007206 ORTHO05D009176 2.7e-55 219.2 130 67.7
Haze_19480 Corylus avellana HOM05D007206 ORTHO05D009176 3.5e-55 218.8 163 55.8
Solyc09g008590.4 Solanum lycopersicum HOM05D007206 ORTHO05D009176 3.5e-55 218.8 141 63.8
Sopen01g017760 Solanum pennellii HOM05D007206 ORTHO05D009176 4.6e-55 218.4 141 63.8
PGSC0003DMG400012983 Solanum tuberosum HOM05D007206 ORTHO05D009176 6.0e-55 218.0 159 58.5
SalBow3G1834 Salvia bowleyana HOM05D007206 ORTHO05D009176 2.3e-54 216.1 179 55.3
CSS0049694 Camellia sinensis var. sinensis HOM05D007206 ORTHO05D009176 3.9e-54 215.3 171 63.2
CiPaw.09G005300 Carya illinoinensis HOM05D007206 ORTHO05D009176 5.1e-54 214.9 159 57.2
Lj2C124T14 Lonicera japonica HOM05D007206 ORTHO05D009176 1.1e-53 213.8 166 60.2
MELO3C009409.2 Cucumis melo HOM05D007206 ORTHO05D009176 9.6e-53 210.7 137 60.6
CsaV3_3G036450 Cucumis sativus L. HOM05D007206 ORTHO05D009176 1.6e-52 209.9 138 60.9
FAN05G5006 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.1e-52 209.5 167 57.5
Prupe.7G122800 Prunus persica HOM05D007206 ORTHO05D009176 2.1e-52 209.5 164 56.1
Manes.09G048990 Manihot esculenta HOM05D007206 ORTHO05D009176 3.6e-52 208.8 158 55.1
FvH4_6g17250 Fragaria vesca HOM05D007206 ORTHO05D009176 6.2e-52 208.0 134 66.4
CAN.G1759.3 Capsicum annuum HOM05D007206 ORTHO05D009176 8.1e-52 207.6 152 57.9
QL07p041366 Quercus lobata HOM05D007206 ORTHO05D009176 1.1e-51 207.2 132 65.9
RcHm_v2.0_Chr3g0471351 Rosa chinensis HOM05D007206 ORTHO05D009176 1.4e-51 206.8 161 55.9
FAN05G2314 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.4e-51 206.1 167 56.3
Potri.006G119100 Populus trichocarpa HOM05D007206 ORTHO05D009176 3.1e-51 205.7 174 52.9
ClCG10G019630 Citrullus lanatus HOM05D007206 ORTHO05D009176 4.0e-51 205.3 132 62.1
Sabra06G0093700 Salix brachista HOM05D007206 ORTHO05D009176 4.0e-51 205.3 175 50.9
Duzib093G2029 Durio zibethinus HOM05D007206 ORTHO05D009176 5.3e-51 204.9 158 55.7
FAN14G2195 Fragaria x ananassa HOM05D007206 ORTHO05D009176 5.3e-51 204.9 134 65.7
Hund01087 Selenicereus undatus HOM05D007206 ORTHO05D009176 5.3e-51 204.9 163 52.8
VMungo1383G0088 Vigna mungo HOM05D007206 ORTHO05D009176 5.3e-51 204.9 158 53.8
Glyma.19G188400 Glycine max HOM05D007206 ORTHO05D009176 6.9e-51 204.5 159 54.1
Lalb_Chr25g0288781 Lupinus albus HOM05D007206 ORTHO05D009176 9.0e-51 204.1 183 49.2
ATR0580G453 Amborella trichopoda HOM05D007206 ORTHO05D009176 3.4e-50 202.2 134 61.9
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 5.8e-50 201.4 155 54.8
Ca_08938_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.3e-49 200.3 168 51.8
Ca_30111_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 1.3e-49 200.3 168 51.8
Sed0016601 Sechium edule HOM05D007206 ORTHO05D009176 1.3e-49 200.3 133 59.4
TPR.G31671 Trifolium pratense HOM05D007206 ORTHO05D009176 1.7e-49 199.9 148 56.8
Glyma.03G188300 Glycine max HOM05D007206 ORTHO05D009176 2.2e-49 199.5 159 52.8
Lj1g0012469 Lotus japonicus HOM05D007206 ORTHO05D009176 4.9e-49 198.4 161 52.8
Aqoxy1G01032 Aquilegia oxysepala HOM05D007206 ORTHO05D009176 6.4e-49 198.0 165 52.7
Eucgr.K02418 Eucalyptus grandis HOM05D007206 ORTHO05D009176 1.4e-48 196.8 164 53.0
COL.COLO4_22256 Corchorus olitorius HOM05D007206 ORTHO05D009176 4.2e-48 195.3 170 51.2
Medtr7g102770 Medicago truncatula HOM05D007206 ORTHO05D009176 4.2e-48 195.3 175 50.3
MD14G1096900 Malus domestica HOM05D007206 ORTHO05D009176 7.1e-48 194.5 166 50.6
Phvul.001G183600 Phaseolus vulgaris HOM05D007206 ORTHO05D009176 1.6e-47 193.4 133 58.6
TWI77G0103 Tripterygium wilfordii HOM05D007206 ORTHO05D009176 1.6e-47 193.4 161 52.2
Psat0s4599g0080 Pisum sativum HOM05D007206 ORTHO05D009176 7.9e-47 191.0 174 51.1
MD12G1102700 Malus domestica HOM05D007206 ORTHO05D009176 3.9e-46 188.7 165 50.9
Thecc.05G075700 Theobroma cacao HOM05D007206 ORTHO05D009176 3.9e-46 188.7 172 50.0
Cpa.g.sc5.124 Carica papaya HOM05D007206 ORTHO05D009176 8.7e-46 187.6 158 50.6
PSO063G5977 Papaver somniferum HOM05D007206 ORTHO05D009176 3.3e-45 185.7 131 63.4
MBI18_g24930_MAGBIO Magnolia biondii HOM05D007206 ORTHO05D009176 5.6e-45 184.9 132 58.3
THA.LOC104826925 Tarenaya hassleriana HOM05D007206 ORTHO05D009176 7.4e-45 184.5 164 51.8
Gohir.D01G129600 Gossypium hirsutum HOM05D007206 ORTHO05D009176 2.8e-44 182.6 158 51.3
AL3G21200 Arabidopsis lyrata HOM05D007206 ORTHO05D009176 3.7e-44 182.2 159 46.5
CARHR084450 Cardamine hirsuta HOM05D007206 ORTHO05D009176 3.7e-44 182.2 142 52.8
AT3G09925 Arabidopsis thaliana HOM05D007206 ORTHO05D009176 1.4e-43 180.3 162 49.4
Gorai.002G160400 Gossypium raimondii HOM05D007206 ORTHO05D009176 1.4e-43 180.3 158 50.6
Ciclev10006960m.g Citrus clementina HOM05D007206 ORTHO05D009176 3.1e-43 179.1 178 48.3
Aa31LG3G2410 Aethionema arabicum HOM05D007206 ORTHO05D009176 4.0e-43 178.7 163 48.5
Carub.0003s0903 Capsella rubella HOM05D007206 ORTHO05D009176 4.0e-43 178.7 161 44.7
BcaC01g04253 Brassica carinata HOM05D007206 ORTHO05D009176 5.3e-43 178.3 161 44.7
BolC3t16614H Brassica oleracea HOM05D007206 ORTHO05D009176 5.3e-43 178.3 161 44.7
Sp3g08280 Schrenkiella parvula HOM05D007206 ORTHO05D009176 5.3e-43 178.3 161 45.3
Sc02g0001330 Simmondsia chinensis HOM05D007206 ORTHO05D009176 5.3e-43 178.3 133 51.9
BraA03t12750Z Brassica rapa HOM05D007206 ORTHO05D009176 1.2e-42 177.2 161 44.1
Sed0006266 Sechium edule HOM05D007206 ORTHO05D009176 2.6e-42 176.0 133 51.9
C03p43430 Brassica napus HOM05D007206 ORTHO05D009176 4.5e-42 175.3 161 46.6
C05p58110 Brassica napus HOM05D007206 ORTHO05D009176 2.9e-41 172.6 163 43.6
BolC5t34468H Brassica oleracea HOM05D007206 ORTHO05D009176 2.9e-41 172.6 163 43.6
BcaB03g11581 Brassica carinata HOM05D007206 ORTHO05D009176 3.8e-41 172.2 158 46.8
A03p35770 Brassica napus HOM05D007206 ORTHO05D009176 3.8e-41 172.2 163 46.6
Thhalv10021649m.g Eutrema salsugineum HOM05D007206 ORTHO05D009176 3.8e-41 172.2 161 43.5
Peaxi162Scf01195g00005 Petunia axillaris HOM05D007206 ORTHO05D009176 6.5e-41 171.4 166 48.2
A05p39080 Brassica napus HOM05D007206 ORTHO05D009176 1.1e-40 170.6 161 43.5
BraA05t22700Z Brassica rapa HOM05D007206 ORTHO05D009176 1.1e-40 170.6 161 43.5
Atru.chr8.1702 Acer truncatum HOM05D007206 ORTHO05D009176 1.2e-39 167.2 133 51.9
AUR62022783 Chenopodium quinoa HOM05D007206 ORTHO05D009176 1.8e-38 163.3 125 54.4
AUR62043339 Chenopodium quinoa HOM05D007206 ORTHO05D009176 2.3e-38 162.9 125 53.6
CANSAT80G1624 Cannabis sativa HOM05D007206 ORTHO05D009176 3.9e-38 162.2 157 49.7
HPP92_008498 Vanilla planifolia HOM05D007206 ORTHO05D009176 3.9e-38 162.2 171 42.1
Dinv35836 Davidia involucrata HOM05D007206 ORTHO05D009176 5.7e-37 158.3 115 61.7
arahy.Tifrunner.gnm1.ann1.06CJ1U Arachis hypogaea HOM05D007206 ORTHO05D009176 2.4e-35 152.9 102 60.8
EL10Ac9g22544 Beta vulgaris HOM05D007206 ORTHO05D009176 1.2e-34 150.6 133 50.4
arahy.Tifrunner.gnm1.ann1.A01TPE Arachis hypogaea HOM05D007206 ORTHO05D009176 3.4e-34 149.1 102 58.8
DCAR_017650 Daucus carota HOM05D007206 ORTHO05D009176 1.9e-32 143.3 136 48.5
PSO339G4243 Papaver somniferum HOM05D007206 ORTHO05D009176 3.5e-31 139.0 172 45.3
PSO063G3127 Papaver somniferum HOM05D007206 ORTHO05D009176 3.0e-30 136.0 145 49.0
BcaC05g29720 Brassica carinata HOM05D007206 ORTHO05D009176 7.4e-29 131.3 144 37.5
FAN09G1747 Fragaria x ananassa HOM05D007206 ORTHO05D022624 5.0e-25 118.6 82 62.2
Os10g0546100 Oryza sativa ssp. japonica HOM05D007206 ORTHO05D009176 1.4e-24 117.1 143 38.5
Zm00001eb022730 Zea mays HOM05D007206 ORTHO05D009176 6.1e-23 111.7 156 39.1
Eucgr.F02194 Eucalyptus grandis HOM05D007206 ORTHO05D009176 1.4e-22 110.5 99 50.5
GSVIVG01033715001 Vitis vinifera HOM05D007206 ORTHO05D009176 1.8e-22 110.2 82 59.8
GSVIVG01033719001 Vitis vinifera HOM05D007206 ORTHO05D009176 1.8e-22 110.2 82 59.8
Lalb_Chr01g0018521 Lupinus albus HOM05D007206 ORTHO05D009176 3.1e-11 72.8 55 52.7
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 1.6e-10 70.5 140 36.4
DCAR_011836 Daucus carota HOM05D005469 ORTHO05D001701 2.0e-10 70.1 175 30.3
Os01g0164300 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 2.0e-10 70.1 113 38.9
Zm00001eb123470 Zea mays HOM05D005469 ORTHO05D001701 4.5e-10 68.9 105 36.2
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 5.9e-10 68.6 128 28.9
Sopen02g022900 Solanum pennellii HOM05D003009 ORTHO05D001701 7.7e-10 68.2 101 36.6
PGSC0003DMG400029698 Solanum tuberosum HOM05D003009 ORTHO05D001701 7.7e-10 68.2 110 35.5
AUR62012286 Chenopodium quinoa HOM05D005469 ORTHO05D001701 3.8e-09 65.9 170 30.6
AUR62022927 Chenopodium quinoa HOM05D005469 ORTHO05D001701 6.5e-09 65.1 170 30.0
Lsat_1_v5_gn_2_124301 Lactuca sativa HOM05D005469 ORTHO05D001701 6.5e-09 65.1 165 28.5
HPP92_018099 Vanilla planifolia HOM05D005469 ORTHO05D001701 1.5e-08 63.9 168 27.4
Nitab4.5_0001652g0140 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.9e-08 63.5 125 31.2
Os01g0164075 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 1.9e-08 63.5 137 29.2
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 1.9e-08 63.5 130 32.3
Sopen02g022890 Solanum pennellii HOM05D003009 ORTHO05D001701 2.5e-08 63.2 99 32.3
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 3.2e-08 62.8 136 30.9
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 4.2e-08 62.4 104 38.5
CAN.G529.5 Capsicum annuum HOM05D003009 ORTHO05D001701 5.5e-08 62.0 99 35.4
COL.COLO4_23309 Corchorus olitorius HOM05D002284 ORTHO05D002427 9.4e-08 61.2 138 31.2
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 9.4e-08 61.2 104 36.5
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 9.4e-08 61.2 130 32.3
Aqoxy1G01324 Aquilegia oxysepala HOM05D005469 ORTHO05D001701 1.2e-07 60.8 102 34.3
Lalb_Chr01g0018511 Lupinus albus HOM05D007206 ORTHO05D009176 1.2e-07 60.8 47 55.3
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 1.2e-07 60.8 151 30.5
EL10Ac2g04878 Beta vulgaris HOM05D005469 ORTHO05D001701 1.6e-07 60.5 142 31.0
Lsat_1_v5_gn_2_124321 Lactuca sativa HOM05D005469 ORTHO05D001701 1.6e-07 60.5 132 29.5
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 1.6e-07 60.5 124 33.1
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 1.6e-07 60.5 124 33.1
Ah.10g036310 Amaranthus hybridus HOM05D005469 ORTHO05D001701 2.1e-07 60.1 112 31.2
HanXRQChr14g0459401 Helianthus annuus HOM05D005469 ORTHO05D001701 2.1e-07 60.1 176 27.3
MBI03_g43893_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 2.1e-07 60.1 131 28.2
Nitab4.5_0001652g0160 Nicotiana tabacum HOM05D003009 ORTHO05D001701 2.1e-07 60.1 96 32.3
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-07 60.1 136 30.9
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-07 60.1 136 30.9
ECA238G1751 Erigeron canadensis HOM05D005469 ORTHO05D001701 2.7e-07 59.7 134 29.1
MBI08_g05500_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.7e-07 59.7 116 32.8
Peaxi162Scf00250g00058 Petunia axillaris HOM05D003009 ORTHO05D001701 2.7e-07 59.7 123 29.3
Peaxi162Scf74053g00003 Petunia axillaris HOM05D003009 ORTHO05D001701 2.7e-07 59.7 123 29.3
Solyc02g078060.1 Solanum lycopersicum HOM05D003009 ORTHO05D001701 2.7e-07 59.7 111 31.5
Solyc02g078050.4 Solanum lycopersicum HOM05D003009 ORTHO05D001701 4.7e-07 58.9 99 31.3
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 6.1e-07 58.5 136 30.9
Gohir.D11G118100 Gossypium hirsutum HOM05D002284 ORTHO05D002427 8.0e-07 58.2 128 28.9
HanXRQChr07g0203111 Helianthus annuus HOM05D005469 ORTHO05D001701 8.0e-07 58.2 173 26.0
Sp1g24490 Schrenkiella parvula HOM05D003009 ORTHO05D001701 8.0e-07 58.2 140 28.6
SMO133G0010 Selaginella moellendorffii HOM05D007206 ORTHO05D002427 8.0e-07 58.2 99 35.4
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 8.0e-07 58.2 134 27.6
TPR.G33986 Trifolium pratense HOM05D002284 ORTHO05D002427 1.0e-06 57.8 131 29.8
Aa31LG10G16480 Aethionema arabicum HOM05D002284 ORTHO05D002427 1.4e-06 57.4 131 30.5
CAN.G529.8 Capsicum annuum HOM05D003009 ORTHO05D001701 1.4e-06 57.4 76 42.1
SEGI_21121 Sequoiadendron giganteum HOM05D000859 ORTHO05D000668 1.4e-06 57.4 89 36.0
Thecc.01G305500 Theobroma cacao HOM05D002284 ORTHO05D002427 1.4e-06 57.4 127 30.7
ECA238G2582 Erigeron canadensis HOM05D005469 ORTHO05D001701 1.8e-06 57.0 140 27.9
Nitab4.5_0001652g0150 Nicotiana tabacum HOM05D003009 ORTHO05D001701 1.8e-06 57.0 104 32.7
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 2.3e-06 56.6 151 30.5
COL.COLO4_25530 Corchorus olitorius HOM05D005469 ORTHO05D001701 2.3e-06 56.6 135 28.1
Thecc.01G305100 Theobroma cacao HOM05D002284 ORTHO05D002427 2.3e-06 56.6 129 29.5
Medtr1g087935 Medicago truncatula HOM05D002284 ORTHO05D002427 4.0e-06 55.8 138 29.0
Sabra08G0053200 Salix brachista HOM05D005469 ORTHO05D001701 6.7e-06 55.1 133 29.3
PGSC0003DMG400029699 Solanum tuberosum HOM05D003009 ORTHO05D001701 6.7e-06 55.1 99 30.3
AagrBONN_evm.TU.Sc2ySwM_117.3504 Anthoceros agrestis HOM05D005469 ORTHO05D001701 8.8e-06 54.7 130 29.2
Peaxi162Scf00250g00037 Petunia axillaris HOM05D003009 ORTHO05D001701 8.8e-06 54.7 78 38.5
Solyc02g078100.3 Solanum lycopersicum HOM05D003009 ORTHO05D001701 8.8e-06 54.7 101 31.7
Sopen02g022930 Solanum pennellii HOM05D003009 ORTHO05D001701 8.8e-06 54.7 101 31.7


User provided reference genes

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