Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0400491 Helianthus annuus HOM05D003470 ORTHO05D004157 0.0e+00 1256.5 952 100.0
ECA233G0686 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.1e-213 747.7 953 62.4
Lsat_1_v5_gn_6_28040 Lactuca sativa HOM05D003470 ORTHO05D004157 5.1e-206 722.2 957 62.9
CSS0012208 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 8.1e-111 406.0 1165 35.3
CSS0007947 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 6.8e-110 402.9 1165 35.8
Dinv37350 Davidia involucrata HOM05D003470 ORTHO05D004157 1.9e-107 394.8 1190 34.2
MD14G1098000 Malus domestica HOM05D003470 ORTHO05D004157 1.2e-101 375.6 1077 31.8
HanXRQChr07g0186251 Helianthus annuus HOM05D003470 ORTHO05D004157 2.5e-96 357.8 939 39.1
MD12G1103600 Malus domestica HOM05D003470 ORTHO05D004157 2.5e-96 357.8 1069 34.4
QL07p041535 Quercus lobata HOM05D003470 ORTHO05D004157 4.3e-96 357.1 1069 36.6
Potri.006G120400 Populus trichocarpa HOM05D003470 ORTHO05D004157 8.9e-94 349.4 1048 36.6
Prupe.7G123700 Prunus persica HOM05D003470 ORTHO05D004157 7.6e-93 346.3 1047 37.2
Actinidia26639 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.3e-92 345.5 1144 36.5
Haze_19469 Corylus avellana HOM05D003470 ORTHO05D004157 3.2e-91 340.9 1057 33.7
Sabra06G0094700 Salix brachista HOM05D003470 ORTHO05D004157 4.2e-91 340.5 1048 33.5
TAR633G0390 Trochodendron aralioides HOM05D003470 ORTHO05D004157 2.1e-90 338.2 1319 31.7
RcHm_v2.0_Chr3g0471201 Rosa chinensis HOM05D003470 ORTHO05D004157 7.8e-90 336.3 1062 37.0
Lj3C994T12 Lonicera japonica HOM05D003470 ORTHO05D004157 6.2e-87 326.6 1045 37.8
Atru.chr8.1716 Acer truncatum HOM05D003470 ORTHO05D004157 5.3e-86 323.6 1055 31.8
CiPaw.09G004500 Carya illinoinensis HOM05D003470 ORTHO05D004157 1.7e-81 308.5 1035 32.0
Gohir.A10G200100 Gossypium hirsutum HOM05D003470 ORTHO05D004157 2.5e-80 304.7 1189 29.9
Thecc.05G074600 Theobroma cacao HOM05D003470 ORTHO05D004157 3.3e-80 304.3 1070 29.3
GSVIVG01033709001 Vitis vinifera HOM05D003470 ORTHO05D004157 9.6e-80 302.8 1101 31.2
PSO063G0006 Papaver somniferum HOM05D003470 ORTHO05D004157 1.6e-79 302.0 1198 27.5
CANSAT78G0551 Cannabis sativa HOM05D003470 ORTHO05D004157 4.5e-77 293.9 940 31.3
CiPaw.10G002200 Carya illinoinensis HOM05D003470 ORTHO05D004157 4.5e-77 293.9 1073 31.5
TWI74G0295 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 1.1e-75 289.3 1069 29.1
Gorai.011G233700 Gossypium raimondii HOM05D003470 ORTHO05D004157 1.4e-75 288.9 1189 32.9
Aqoxy1G01047 Aquilegia oxysepala HOM05D003470 ORTHO05D004157 7.1e-75 286.6 1275 29.1
Gohir.D10G208000 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.6e-74 285.4 1189 32.9
Nn6g35185 Nelumbo nucifera HOM05D003470 ORTHO05D004157 3.5e-74 284.3 1161 32.3
TAR623G0591 Trochodendron aralioides HOM05D003470 ORTHO05D004157 3.5e-74 284.3 1291 29.7
PSO339G3515 Papaver somniferum HOM05D003470 ORTHO05D004157 1.3e-73 282.3 1202 28.0
FvH4_6g17113 Fragaria vesca HOM05D003470 ORTHO05D004157 1.5e-72 278.9 1096 37.0
Oeu026700.1 Olea europaea HOM05D003470 ORTHO05D004157 1.9e-72 278.5 1166 30.0
Duzib093G1940 Durio zibethinus HOM05D003470 ORTHO05D004157 9.6e-72 276.2 986 29.7
FAN14G5641 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.6e-71 275.4 1096 37.0
FAN05G3818 Fragaria x ananassa HOM05D003470 ORTHO05D004157 3.7e-71 274.2 1101 33.3
FAN05G4328 Fragaria x ananassa HOM05D003470 ORTHO05D004157 4.0e-70 270.8 1101 34.7
Potri.008G029800 Populus trichocarpa HOM05D003470 ORTHO05D004157 1.2e-69 269.2 1217 29.0
Duzib114G1051 Durio zibethinus HOM05D003470 ORTHO05D004157 7.6e-69 266.5 1281 27.6
Gohir.A09G143900 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.0e-68 266.2 927 30.0
Manes.08G016800 Manihot esculenta HOM05D003470 ORTHO05D004157 8.4e-68 263.1 1051 35.5
Nn2g13883 Nelumbo nucifera HOM05D003470 ORTHO05D004157 3.0e-65 254.6 1275 27.4
Actinidia18557 Actinidia chinensis HOM05D003470 ORTHO05D004157 5.1e-65 253.8 1157 29.6
Duzib128G1576 Durio zibethinus HOM05D003470 ORTHO05D004157 8.7e-65 253.1 1072 28.5
Sabra08G0020000 Salix brachista HOM05D003470 ORTHO05D004157 7.4e-64 250.0 1294 27.4
Thecc.10G090100 Theobroma cacao HOM05D003470 ORTHO05D004157 4.1e-62 244.2 1282 26.8
Actinidia28930 Actinidia chinensis HOM05D003470 ORTHO05D004157 4.5e-61 240.7 746 31.8
Gorai.006G160300 Gossypium raimondii HOM05D003470 ORTHO05D004157 1.7e-60 238.8 970 30.9
CSS0002390 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 2.9e-60 238.0 1244 27.8
MELO3C009401.2 Cucumis melo HOM05D003470 ORTHO05D004157 2.9e-60 238.0 998 27.9
Glyma.10G062800 Glycine max HOM05D003470 ORTHO05D004157 6.5e-60 236.9 1037 29.1
MSTRG.19203 Avicennia marina HOM05D003470 ORTHO05D004157 1.9e-59 235.3 1169 28.4
Ciclev10033678m.g Citrus clementina HOM05D003470 ORTHO05D004157 2.5e-59 235.0 1283 26.8
FAN09G0366 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.2e-58 232.6 1066 31.2
Phvul.007G226600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 4.6e-58 230.7 913 29.5
CsaV3_3G036530 Cucumis sativus L. HOM05D003470 ORTHO05D004157 6.1e-58 230.3 925 27.7
Nitab4.5_0004731g0020 Nicotiana tabacum HOM05D003470 ORTHO05D004157 7.9e-58 229.9 1047 30.9
Rhsim03G0111500 Rhododendron simsii HOM05D003470 ORTHO05D004157 3.9e-57 227.6 1212 30.3
GSVIVG01016161001 Vitis vinifera HOM05D003470 ORTHO05D004157 1.1e-56 226.1 1064 28.9
Zm00001eb404310 Zea mays HOM05D003470 ORTHO05D004157 1.9e-56 225.3 1063 26.9
Sopen09g003360 Solanum pennellii HOM05D003470 ORTHO05D004157 8.2e-55 219.9 1043 26.7
SalBow3G0781 Salvia bowleyana HOM05D003470 ORTHO05D004157 4.5e-53 214.2 1075 26.3
HanXRQChr08g0218281 Helianthus annuus HOM05D003470 ORTHO05D004157 5.9e-53 213.8 902 32.9
ClCG10G019700 Citrullus lanatus HOM05D003470 ORTHO05D004157 1.0e-52 213.0 930 33.3
Rhsim03G0087000 Rhododendron simsii HOM05D003470 ORTHO05D004157 1.3e-52 212.6 1150 31.6
Solyc09g008530.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 5.0e-52 210.7 1050 27.0
ECA238G1102 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.6e-50 205.7 991 28.4
Manes.10G053000 Manihot esculenta HOM05D003470 ORTHO05D004157 2.1e-50 205.3 1290 25.0
vmacro07200 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 2.7e-50 204.9 1208 30.0
Glyma.13G147300 Glycine max HOM05D003470 ORTHO05D004157 2.3e-49 201.8 1038 30.2
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 3.9e-49 201.1 1477 25.7
arahy.Tifrunner.gnm1.ann1.8W3QW7 Arachis hypogaea HOM05D003470 ORTHO05D004157 6.7e-49 200.3 945 31.7
arahy.Tifrunner.gnm1.ann1.FKX1H2 Arachis hypogaea HOM05D003470 ORTHO05D004157 6.7e-49 200.3 945 31.7
Lj5g0020068 Lotus japonicus HOM05D003470 ORTHO05D004157 6.7e-49 200.3 1032 29.5
Nitab4.5_0003906g0030 Nicotiana tabacum HOM05D003470 ORTHO05D004157 2.0e-48 198.7 1099 25.0
TAR369G0117 Trochodendron aralioides HOM05D003470 ORTHO05D004157 3.3e-48 198.0 328 43.6
DCAR_006389 Daucus carota HOM05D003470 ORTHO05D004157 9.7e-48 196.4 1169 25.7
Duzib106G0260 Durio zibethinus HOM05D003470 ORTHO05D004157 9.7e-48 196.4 1284 23.4
Hund06764 Selenicereus undatus HOM05D003470 ORTHO05D004157 5.3e-46 190.7 1014 29.0
PGSC0003DMG400003903 Solanum tuberosum HOM05D003470 ORTHO05D004157 2.6e-45 188.3 1048 27.1
TPR.G22446 Trifolium pratense HOM05D003470 ORTHO05D004157 1.7e-44 185.7 923 27.3
COL.COLO4_32876 Corchorus olitorius HOM05D003470 ORTHO05D004157 5.0e-44 184.1 1280 25.4
Cpa.g.sc53.171 Carica papaya HOM05D003470 ORTHO05D004157 5.5e-43 180.6 987 25.5
Medtr1g062200 Medicago truncatula HOM05D003470 ORTHO05D004157 1.2e-42 179.5 888 26.4
TAR369G0811 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.6e-42 179.1 462 32.9
AUR62035493 Chenopodium quinoa HOM05D003470 ORTHO05D004157 4.7e-42 177.6 1222 23.2
Cc06_g04710 Coffea canephora HOM05D003470 ORTHO05D004157 2.3e-41 175.3 1041 24.9
HanXRQChr14g0456131 Helianthus annuus HOM05D003470 ORTHO05D004157 3.3e-40 171.4 978 29.6
Haze_16780 Corylus avellana HOM05D003470 ORTHO05D004157 3.7e-39 167.9 521 30.7
Sc20g0001480 Simmondsia chinensis HOM05D003470 ORTHO05D004157 4.8e-39 167.5 1312 26.3
Dinv31268 Davidia involucrata HOM05D003470 ORTHO05D004157 4.1e-38 164.5 459 31.8
Actinidia28929 Actinidia chinensis HOM05D003470 ORTHO05D004157 7.0e-38 163.7 317 39.1
Cpa.g.sc5.136 Carica papaya HOM05D003470 ORTHO05D004157 5.9e-37 160.6 537 32.6
Eucgr.G02735 Eucalyptus grandis HOM05D003470 ORTHO05D004157 1.0e-36 159.8 1108 22.7
Peaxi162Scf00138g00213 Petunia axillaris HOM05D003470 ORTHO05D004157 1.0e-36 159.8 1110 23.8
Atru.chr12.917 Acer truncatum HOM05D003470 ORTHO05D004157 1.3e-36 159.5 441 33.6
Sed0013053 Sechium edule HOM05D003470 ORTHO05D004157 1.7e-36 159.1 954 30.4
vmacro07330 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 2.2e-36 158.7 421 37.8
Psat6g076760 Pisum sativum HOM05D003470 ORTHO05D004157 2.9e-36 158.3 929 31.4
TWI38G0957 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 3.2e-35 154.8 683 25.5
Ca_11537_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 1.2e-34 152.9 1034 24.1
Zm00001eb000590 Zea mays HOM05D003470 ORTHO05D004157 1.2e-34 152.9 1088 26.5
PGR142G1299 Punica granatum HOM05D003470 ORTHO05D004157 2.1e-34 152.1 1062 26.2
CAN.G1038.4 Capsicum annuum HOM05D003470 ORTHO05D004157 4.7e-34 151.0 936 24.8
Migut.J00469 Erythranthe guttata HOM05D003470 ORTHO05D004157 1.8e-33 149.1 936 27.1
VMungo0720G2647 Vigna mungo HOM05D003470 ORTHO05D000001 3.0e-33 148.3 926 26.9
COL.COLO4_22242 Corchorus olitorius HOM05D003470 ORTHO05D004157 1.2e-32 146.4 1006 34.1
Lsat_1_v5_gn_2_103301 Lactuca sativa HOM05D003470 ORTHO05D004157 2.0e-32 145.6 1097 24.2
Gohir.D09G139800 Gossypium hirsutum HOM05D003470 ORTHO05D004157 3.3e-32 144.8 399 34.6
SGA_v2.0_scaffold40G15455 Striga asiatica HOM05D003470 ORTHO05D003317 1.3e-31 142.9 306 35.6
ATR0043G047 Amborella trichopoda HOM05D003470 ORTHO05D004157 2.4e-30 138.7 962 22.9
Gohir.D09G139850 Gossypium hirsutum HOM05D003470 ORTHO05D004157 6.5e-28 130.6 221 38.0
Sed0006633 Sechium edule HOM05D003470 ORTHO05D004157 1.1e-27 129.8 903 25.8
Lalb_Chr02g0151131 Lupinus albus HOM05D003470 ORTHO05D004157 1.5e-27 129.4 1030 22.9
Atru.chr12.915 Acer truncatum HOM05D003470 ORTHO05D004157 4.7e-26 124.4 190 44.7
Cpa.g.sc850.1 Carica papaya HOM05D003470 ORTHO05D004157 8.0e-26 123.6 434 30.9
Lsat_1_v5_gn_8_17720 Lactuca sativa HOM05D003470 ORTHO05D004157 8.0e-26 123.6 482 31.5
Psat6g173600 Pisum sativum HOM05D003470 ORTHO05D004157 8.0e-26 123.6 913 23.1
Zm00001eb391920 Zea mays HOM05D003470 ORTHO05D004157 1.4e-25 122.9 980 24.3
Ca_10457_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 4.0e-25 121.3 1021 22.9
Sopen11g003760 Solanum pennellii HOM05D003470 ORTHO05D004157 4.0e-25 121.3 1187 21.3
Haze_16781 Corylus avellana HOM05D003470 ORTHO05D004157 1.2e-24 119.8 915 23.6
Os03g0107400 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 1.5e-24 119.4 538 26.8
Medtr1g090807 Medicago truncatula HOM05D003470 ORTHO05D004157 2.0e-24 119.0 993 23.3
SalBow6G0046 Salvia bowleyana HOM05D003470 ORTHO05D004157 3.4e-24 118.2 855 22.3
Sc06g0002130 Simmondsia chinensis HOM05D003470 ORTHO05D004157 3.4e-24 118.2 1239 23.6
ECA233G4972 Erigeron canadensis HOM05D003470 ORTHO05D004157 5.7e-24 117.5 1084 24.8
Haze_16782 Corylus avellana HOM05D003470 ORTHO05D004157 1.4e-22 112.8 608 24.5
CDE06G1109 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 3.8e-20 104.8 481 27.0
Solyc11g007900.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 1.9e-19 102.4 1184 23.0
Eucgr.A01602 Eucalyptus grandis HOM05D003470 ORTHO05D004157 5.5e-19 100.9 789 29.4
CAN.G135.27 Capsicum annuum HOM05D003470 ORTHO05D004157 1.6e-18 99.4 1185 20.8
Nitab4.5_0000255g0010 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.6e-18 99.4 1206 22.1
SEGI_39816 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 3.6e-18 98.2 363 26.7
TPR.G37812 Trifolium pratense HOM05D003470 ORTHO05D004157 1.4e-17 96.3 879 22.9
Ca_11528_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 4.0e-17 94.7 660 23.6
Psat6g076800 Pisum sativum HOM05D003470 ORTHO05D004157 1.2e-16 93.2 331 31.1
Sed0009504 Sechium edule HOM05D003470 ORTHO05D004157 1.2e-16 93.2 508 22.4
Lj5g0018822 Lotus japonicus HOM05D003470 ORTHO05D004157 9.8e-16 90.1 957 26.4
Peaxi162Scf00543g00019 Petunia axillaris HOM05D003470 ORTHO05D004157 1.7e-15 89.4 1212 21.9
AUR62019445 Chenopodium quinoa HOM05D002464 ORTHO05D002530 6.3e-15 87.4 173 35.8
HPP92_008497 Vanilla planifolia HOM05D003470 ORTHO05D004157 6.3e-15 87.4 1249 24.1
Os10g0547000 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 8.3e-15 87.0 415 25.8
TWI38G0799 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 1.1e-14 86.7 445 26.5
Nitab4.5_0000593g0330 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.4e-14 86.3 1216 20.8
Migut.F01673 Erythranthe guttata HOM05D003470 ORTHO05D004157 3.1e-14 85.1 162 34.0
PSO478G4813 Papaver somniferum HOM05D003470 ORTHO05D004157 5.4e-14 84.3 235 31.5
CDE02G1862 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 2.0e-13 82.4 180 35.0
Phvul.007G145600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 2.0e-13 82.4 1062 23.2
ClCG08G007930 Citrullus lanatus HOM05D003470 ORTHO05D004157 2.7e-13 82.0 946 20.7
COL.COLO4_32886 Corchorus olitorius HOM05D003470 ORTHO05D022439 2.9e-12 78.6 101 44.6
CDE03G0074 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 6.6e-12 77.4 332 27.1
Eucgr.A01601 Eucalyptus grandis HOM05D003470 ORTHO05D004157 8.6e-12 77.0 184 35.9
SEGI_27097 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 4.3e-11 74.7 1169 21.6
Duzib128G1410 Durio zibethinus HOM05D003470 ORTHO05D022439 5.6e-11 74.3 101 44.6
CDE02G3590 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 2.1e-10 72.4 268 39.9
Atru.chr12.916 Acer truncatum HOM05D003470 ORTHO05D004157 6.1e-10 70.9 100 42.0
Medtr6g014000 Medicago truncatula HOM05D000027 ORTHO05D004157 8.9e-09 67.0 103 41.7
Gohir.D10G208200 Gossypium hirsutum HOM05D003470 ORTHO05D022439 2.0e-08 65.9 100 42.0
Gorai.011G233900 Gossypium raimondii HOM05D003470 ORTHO05D022439 2.0e-08 65.9 100 42.0
Gohir.A10G200300 Gossypium hirsutum HOM05D003470 ORTHO05D022439 3.4e-08 65.1 100 42.0
CAN.G852.4 Capsicum annuum HOM05D003470 ORTHO05D004157 1.3e-07 63.2 123 39.0
Lj3A935T49 Lonicera japonica HOM05D003470 ORTHO05D004157 2.9e-07 62.0 949 25.8
Glyma.10G198700 Glycine max HOM05D003470 ORTHO05D004157 4.9e-07 61.2 1090 21.1
arahy.Tifrunner.gnm1.ann1.08YI9Q Arachis hypogaea HOM05D003470 ORTHO05D004157 1.8e-06 59.3 562 22.6
Thecc.10G089600 Theobroma cacao HOM05D003470 ORTHO05D022439 3.2e-06 58.5 100 39.0
VMungo0720G1037 Vigna mungo HOM05D003470 ORTHO05D004157 3.2e-06 58.5 1125 21.9


User provided reference genes

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