Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 6.5e-63 243.8 117 100.0
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.2e-27 126.7 97 66.0
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 1.3e-23 113.2 99 60.6
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 4.3e-22 108.2 129 52.7
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 4.0e-20 101.7 104 57.7
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 4.0e-20 101.7 115 50.4
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.3e-18 96.7 78 64.1
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.9e-15 85.1 86 55.8
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 5.1e-15 84.7 116 44.8
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 6.6e-15 84.3 129 44.2
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 6.6e-15 84.3 100 50.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 8.6e-15 84.0 129 42.6
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.1e-14 83.6 111 46.8
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 1.1e-14 83.6 105 47.6
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 1.9e-14 82.8 79 59.5
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.5e-14 82.4 83 57.8
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 3.3e-14 82.0 87 54.0
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 4.3e-14 81.6 83 56.6
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 4.3e-14 81.6 83 56.6
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 4.3e-14 81.6 99 50.5
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 5.6e-14 81.3 72 63.9
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 9.5e-14 80.5 130 43.1
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.6e-13 79.7 94 50.0
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.6e-13 79.7 96 52.1
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.1e-13 79.3 72 63.9
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 2.8e-13 79.0 98 48.0
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 3.6e-13 78.6 88 56.8
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 3.6e-13 78.6 97 48.5
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.7e-13 78.2 116 46.6
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 8.1e-13 77.4 88 56.8
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 8.1e-13 77.4 99 48.5
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.1e-12 77.0 116 44.8
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.4e-12 76.6 63 61.9
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 2.3e-12 75.9 85 50.6
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 2.3e-12 75.9 114 45.6
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 3.1e-12 75.5 103 45.6
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 4.0e-12 75.1 88 56.8
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 5.2e-12 74.7 94 45.7
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 8.9e-12 73.9 112 48.2
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.2e-11 73.6 113 42.5
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.2e-11 73.6 71 57.7
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 1.5e-11 73.2 73 57.5
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 2.0e-11 72.8 96 52.1
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.0e-11 72.8 113 42.5
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.0e-11 72.8 114 42.1
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.0e-11 72.8 98 46.9
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.6e-11 72.4 113 42.5
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 2.6e-11 72.4 64 64.1
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 2.6e-11 72.4 110 45.5
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 3.4e-11 72.0 83 51.8
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 3.4e-11 72.0 113 42.5
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 3.4e-11 72.0 92 54.3
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 4.4e-11 71.6 95 48.4
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 4.4e-11 71.6 117 41.9
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 7.5e-11 70.9 105 42.9
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.3e-10 70.1 71 59.2
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.3e-10 70.1 125 40.0
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.3e-10 70.1 128 38.3
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 1.7e-10 69.7 67 58.2
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.7e-10 69.7 102 45.1
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.7e-10 69.7 71 57.7
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 2.2e-10 69.3 105 45.7
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 2.2e-10 69.3 81 54.3
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 2.9e-10 68.9 51 68.6
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 2.9e-10 68.9 73 53.4
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 2.9e-10 68.9 82 53.7
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 3.7e-10 68.6 51 72.5
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 3.7e-10 68.6 89 51.7
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 3.7e-10 68.6 124 39.5
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 4.9e-10 68.2 73 54.8
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 6.4e-10 67.8 119 44.5
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 8.3e-10 67.4 75 56.0
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.4e-09 65.9 113 39.8
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 2.4e-09 65.9 84 47.6
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 2.4e-09 65.9 83 53.0
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 3.2e-09 65.5 82 50.0
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 3.2e-09 65.5 82 50.0
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 3.2e-09 65.5 84 48.8
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 3.2e-09 65.5 82 47.6
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 3.2e-09 65.5 88 50.0
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 3.2e-09 65.5 89 48.3
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 4.1e-09 65.1 56 58.9
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 4.1e-09 65.1 103 44.7
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 5.4e-09 64.7 74 47.3
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 9.2e-09 63.9 82 52.4
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 9.2e-09 63.9 99 46.5
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 9.2e-09 63.9 53 67.9
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 9.2e-09 63.9 68 55.9
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.2e-08 63.5 113 40.7
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 1.6e-08 63.2 82 48.8
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 1.6e-08 63.2 126 39.7
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.6e-08 63.2 82 48.8
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.6e-08 63.2 56 57.1
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 2.1e-08 62.8 82 48.8
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 2.1e-08 62.8 82 48.8
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 2.1e-08 62.8 125 40.8
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 2.7e-08 62.4 102 43.1
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 2.7e-08 62.4 68 48.5
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 2.7e-08 62.4 126 38.9
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.5e-08 62.0 85 41.2
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 4.6e-08 61.6 126 39.7
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 4.6e-08 61.6 61 52.5
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 6.0e-08 61.2 132 39.4
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 6.0e-08 61.2 100 45.0
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 6.0e-08 61.2 85 45.9
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 6.0e-08 61.2 73 57.5
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 7.8e-08 60.8 126 38.9
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 1.3e-07 60.1 66 45.5
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 1.3e-07 60.1 76 47.4
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 1.7e-07 59.7 128 39.1
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 1.7e-07 59.7 56 55.4
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 1.7e-07 59.7 83 41.0
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.3e-07 59.3 58 53.4
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.9e-07 58.5 73 42.5
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.9e-07 58.5 73 42.5
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 3.9e-07 58.5 86 45.3
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 5.1e-07 58.2 111 40.5
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.6e-07 57.8 62 50.0
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 6.6e-07 57.8 55 58.2
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 6.6e-07 57.8 71 42.3
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 1.1e-06 57.0 68 45.6
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 1.5e-06 56.6 62 50.0
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.5e-06 56.6 62 50.0
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.5e-06 56.6 62 50.0
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.5e-06 56.6 62 50.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 1.5e-06 56.6 68 47.1
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 1.9e-06 56.2 68 45.6
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 2.5e-06 55.8 68 48.5
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 3.3e-06 55.5 64 53.1
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 3.3e-06 55.5 62 48.4
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 3.3e-06 55.5 74 44.6
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 4.3e-06 55.1 68 45.6
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 4.3e-06 55.1 62 48.4
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 4.3e-06 55.1 132 37.1
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 5.6e-06 54.7 57 50.9
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 5.6e-06 54.7 67 44.8
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 5.6e-06 54.7 63 42.9
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 7.3e-06 54.3 54 53.7
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 7.3e-06 54.3 59 52.5
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 9.5e-06 53.9 110 42.7
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 9.5e-06 53.9 53 50.9


User provided reference genes

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