Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 8.1e-189 663.7 362 100.0
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 6.1e-152 541.2 352 77.8
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 5.0e-122 441.8 375 63.2
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 3.4e-102 375.9 384 56.2
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 3.3e-81 306.2 286 60.5
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.7e-64 249.6 289 48.1
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 8.2e-64 248.4 344 43.9
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.8e-63 247.3 244 53.7
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 3.1e-63 246.5 308 47.7
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 5.3e-63 245.7 322 46.6
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 6.9e-63 245.4 322 45.7
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 9.0e-63 245.0 246 53.7
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.3e-61 241.1 223 56.1
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.2e-61 240.4 250 52.8
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.9e-61 240.0 338 43.5
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.9e-61 240.0 338 43.5
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 3.8e-61 239.6 247 53.4
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 5.0e-61 239.2 323 45.2
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 6.5e-61 238.8 219 55.7
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 8.5e-61 238.4 317 46.1
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.1e-60 238.0 226 55.8
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.1e-60 238.0 322 45.0
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.4e-60 237.7 247 53.0
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 2.5e-60 236.9 244 52.5
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 3.2e-60 236.5 223 53.8
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.2e-59 234.6 225 54.7
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.2e-59 234.6 224 54.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.1e-59 233.8 440 38.2
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.7e-59 233.4 232 51.3
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 2.7e-59 233.4 226 54.0
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.6e-59 233.0 342 42.1
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 4.6e-59 232.6 304 45.4
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.0e-58 231.5 293 48.5
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.3e-58 231.1 224 53.6
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.8e-58 230.7 220 54.1
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.3e-58 230.3 220 52.7
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 2.3e-58 230.3 223 56.1
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 3.9e-58 229.6 398 39.9
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 3.9e-58 229.6 310 47.1
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 3.9e-58 229.6 395 41.0
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 6.7e-58 228.8 267 46.8
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 6.7e-58 228.8 224 54.5
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 6.7e-58 228.8 247 51.8
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 1.9e-57 227.3 275 48.4
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 2.5e-57 226.9 231 52.8
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 2.5e-57 226.9 234 51.7
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.5e-57 226.9 311 44.7
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 3.3e-57 226.5 266 49.2
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 4.3e-57 226.1 307 46.3
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 4.3e-57 226.1 305 44.6
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 4.3e-57 226.1 202 57.9
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 5.7e-57 225.7 220 53.2
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 7.4e-57 225.3 279 45.9
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 7.4e-57 225.3 244 48.4
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 9.7e-57 224.9 309 44.0
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 9.7e-57 224.9 222 53.6
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 9.7e-57 224.9 239 50.2
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 1.3e-56 224.6 289 46.4
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.7e-56 224.2 228 51.8
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.7e-56 224.2 237 50.6
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 2.8e-56 223.4 314 44.6
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.8e-56 223.4 231 53.2
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.7e-56 223.0 232 52.2
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 4.8e-56 222.6 301 47.8
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.1e-55 221.5 427 39.1
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.4e-55 221.1 291 47.4
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.4e-55 221.1 252 48.8
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.8e-55 220.7 291 47.4
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 2.4e-55 220.3 310 44.8
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.4e-55 220.3 322 42.5
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 2.4e-55 220.3 233 49.8
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 3.1e-55 219.9 222 53.2
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 4.1e-55 219.5 253 49.4
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 5.3e-55 219.2 220 52.3
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 5.3e-55 219.2 266 48.9
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 5.3e-55 219.2 281 48.8
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 5.3e-55 219.2 278 47.1
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 5.3e-55 219.2 202 55.4
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 5.3e-55 219.2 324 43.5
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 6.9e-55 218.8 223 52.5
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 6.9e-55 218.8 254 47.2
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 1.2e-54 218.0 238 50.4
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 2.0e-54 217.2 221 53.8
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 2.6e-54 216.9 284 46.8
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 3.4e-54 216.5 282 45.4
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 5.9e-54 215.7 238 50.0
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 5.9e-54 215.7 233 52.4
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 7.7e-54 215.3 296 45.6
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.3e-53 214.5 223 51.6
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.3e-53 214.5 223 51.6
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.3e-53 214.5 223 51.6
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.3e-53 214.5 223 51.6
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.3e-53 214.5 264 46.2
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 2.2e-53 213.8 308 43.5
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 2.2e-53 213.8 341 40.5
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.2e-53 213.8 223 51.6
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 3.8e-53 213.0 183 57.9
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 8.5e-53 211.8 223 51.1
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.5e-52 210.3 307 44.3
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 2.5e-52 210.3 302 44.0
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 3.2e-52 209.9 325 42.2
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 4.2e-52 209.5 427 35.1
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.8e-50 201.8 220 50.0
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 8.8e-50 201.8 198 52.5
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.1e-49 201.4 234 47.9
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.1e-49 201.4 297 41.8
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.5e-49 201.1 246 46.3
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 1.5e-49 201.1 288 42.7
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 2.8e-48 196.8 238 47.5
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 4.8e-48 196.1 240 46.2
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 7.7e-46 188.7 247 43.3
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.4e-44 184.5 245 46.9
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 5.2e-42 176.0 210 45.2
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 6.3e-40 169.1 263 40.7
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 7.0e-39 165.6 299 37.8
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 9.1e-39 165.2 263 39.9
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 5.9e-38 162.5 214 43.0
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 7.7e-30 135.6 216 37.5
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 2.9e-29 133.7 173 41.0
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 6.5e-29 132.5 108 61.1
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 8.0e-27 125.6 247 33.6
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.8e-26 124.4 220 36.4
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 6.8e-26 122.5 138 49.3
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.5e-25 121.3 135 48.9
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 8.3e-24 115.5 107 47.7
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 2.1e-19 100.9 93 50.5
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.4e-18 98.2 117 48.7
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.7e-16 91.3 219 35.2
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.8e-13 80.1 69 62.3
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.0e-10 70.5 104 42.3
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 6.8e-10 69.3 131 40.5
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 8.9e-10 68.9 195 30.8
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 9.8e-09 65.5 116 38.8
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.2e-08 64.3 196 30.1
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.7e-08 63.5 270 30.4
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 2.0e-06 57.8 73 46.6


User provided reference genes

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