Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 5.5e-147 524.2 257 100.0
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 2.4e-86 322.8 257 63.4
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 1.2e-85 320.5 267 67.0
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 9.5e-83 310.8 267 65.9
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 6.2e-74 281.6 274 57.7
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 8.6e-68 261.2 276 54.0
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 4.0e-49 199.1 242 50.0
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 9.0e-41 171.4 278 40.3
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.2e-40 171.0 289 39.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 5.5e-38 162.2 294 38.8
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 9.3e-38 161.4 281 38.8
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 2.7e-37 159.8 279 39.1
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 4.6e-37 159.1 296 37.2
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.3e-36 157.5 298 37.9
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 1.9e-35 153.7 278 38.5
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 4.3e-35 152.5 275 38.9
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 9.7e-35 151.4 303 35.3
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.6e-34 150.6 299 36.8
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 3.7e-34 149.4 300 35.7
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 8.2e-34 148.3 271 37.3
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.8e-33 147.1 278 37.8
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 5.3e-33 145.6 287 37.3
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 1.2e-32 144.4 296 35.5
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 1.2e-32 144.4 296 35.5
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.0e-32 143.7 292 37.7
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.6e-32 143.3 275 35.6
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 7.6e-32 141.7 293 36.2
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.0e-31 141.4 302 34.4
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 3.8e-31 139.4 299 36.8
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.1e-30 137.9 300 36.3
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.4e-30 137.5 300 36.0
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.4e-30 137.5 291 37.5
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.7e-29 133.3 264 39.0
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 4.6e-29 132.5 264 39.0
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.0e-28 131.3 222 37.8
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.0e-28 131.3 209 41.6
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.0e-28 131.3 209 41.6
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.3e-28 131.0 268 38.1
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.3e-28 131.0 302 34.8
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 2.3e-28 130.2 298 35.2
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.0e-28 129.8 265 35.1
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-27 127.9 278 36.0
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.5e-27 127.5 202 42.1
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 2.5e-27 126.7 279 32.6
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.5e-27 126.7 211 39.8
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 3.3e-27 126.3 287 34.8
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 3.3e-27 126.3 197 41.6
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 9.7e-27 124.8 284 33.8
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.3e-26 124.4 286 35.3
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 2.2e-26 123.6 303 33.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.8e-26 123.2 203 36.0
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 3.7e-26 122.9 284 35.6
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 6.3e-26 122.1 267 34.5
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.3e-26 122.1 295 33.9
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 6.3e-26 122.1 257 33.5
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 8.2e-26 121.7 289 33.2
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 8.2e-26 121.7 288 35.1
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.4e-25 120.9 280 35.4
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 2.4e-25 120.2 278 32.0
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 3.1e-25 119.8 188 42.6
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 4.1e-25 119.4 274 31.4
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 5.3e-25 119.0 289 33.9
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 5.3e-25 119.0 161 46.0
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 1.2e-24 117.9 269 30.5
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.5e-24 117.5 181 39.2
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 1.5e-24 117.5 266 35.0
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 5.9e-24 115.5 255 34.1
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 7.7e-24 115.2 160 45.6
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.0e-23 114.8 294 33.0
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.0e-23 114.8 158 43.7
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 2.2e-23 113.6 294 32.3
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 3.8e-23 112.8 163 41.1
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 5.0e-23 112.5 292 32.5
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 5.0e-23 112.5 275 32.0
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 8.5e-23 111.7 292 30.5
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.4e-22 110.9 279 33.7
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.5e-22 110.2 288 30.6
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 4.2e-22 109.4 276 32.6
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 5.5e-22 109.0 277 34.3
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 5.5e-22 109.0 271 35.1
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 7.2e-22 108.6 267 33.0
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 7.2e-22 108.6 209 34.4
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 9.4e-22 108.2 214 36.4
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.2e-21 107.8 251 35.1
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.2e-21 107.8 249 33.3
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.1e-21 107.1 291 30.2
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.7e-21 106.7 278 33.5
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 4.6e-21 105.9 236 35.6
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 4.6e-21 105.9 234 32.1
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 7.9e-21 105.1 302 28.8
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.8e-20 104.0 209 31.1
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.8e-20 104.0 274 33.9
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 2.3e-20 103.6 275 30.9
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 8.8e-20 101.7 168 36.9
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 3.3e-19 99.8 273 33.0
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.3e-19 99.8 253 34.0
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 4.4e-19 99.4 257 32.7
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 5.7e-19 99.0 274 33.6
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 5.7e-19 99.0 274 33.6
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 5.7e-19 99.0 274 33.6
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 7.4e-19 98.6 286 32.5
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 9.7e-19 98.2 259 29.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 9.7e-19 98.2 274 28.5
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.7e-18 97.4 277 32.5
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.3e-18 95.5 256 32.0
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 8.2e-18 95.1 194 37.1
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.2e-18 95.1 260 31.5
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 8.2e-18 95.1 253 33.2
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.1e-17 94.7 297 33.0
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.4e-17 94.4 297 30.3
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.4e-17 94.4 179 40.2
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 1.4e-17 94.4 253 33.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 1.8e-17 94.0 92 55.4
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 3.1e-17 93.2 282 29.8
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 4.1e-17 92.8 161 38.5
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 4.1e-17 92.8 295 29.2
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 4.1e-17 92.8 267 30.7
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 5.3e-17 92.4 280 29.3
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 6.9e-17 92.0 257 31.5
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 9.1e-17 91.7 210 32.4
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.2e-16 91.3 282 29.1
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.0e-16 90.5 277 31.8
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.6e-16 90.1 208 32.7
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.6e-16 90.1 269 27.9
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 3.4e-16 89.7 292 29.5
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 4.5e-16 89.4 283 29.3
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 4.5e-16 89.4 253 31.6
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 5.9e-16 89.0 165 35.2
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 5.9e-16 89.0 166 37.3
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 5.9e-16 89.0 93 52.7
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 5.9e-16 89.0 282 27.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.0e-15 88.2 208 33.2
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.0e-15 88.2 302 28.8
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.0e-15 88.2 209 34.0
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.3e-15 87.8 297 29.6
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-15 87.8 296 30.7
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.3e-15 87.8 254 31.5
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 1.7e-15 87.4 280 28.9
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.7e-15 87.4 302 29.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 2.2e-15 87.0 280 28.6
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-15 86.7 159 36.5
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 3.8e-15 86.3 296 28.7
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.0e-15 85.9 285 28.4
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 8.5e-15 85.1 264 31.8
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 8.5e-15 85.1 158 36.1
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 8.5e-15 85.1 204 33.3
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-14 84.7 208 34.1
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 2.5e-14 83.6 281 29.9
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 2.5e-14 83.6 157 34.4
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.5e-14 83.6 290 28.6
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 3.2e-14 83.2 282 28.0
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 3.2e-14 83.2 276 29.3
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.2e-14 83.2 165 33.9
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 7.2e-14 82.0 280 28.2
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-13 81.3 280 27.5
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-13 80.9 207 32.4
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.6e-13 80.9 207 32.4
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-13 80.5 286 29.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 2.1e-13 80.5 282 26.2
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 2.1e-13 80.5 129 37.2
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 3.6e-13 79.7 141 33.3
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.4e-12 77.8 110 39.1
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 5.2e-12 75.9 273 30.8
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 5.2e-12 75.9 274 29.6
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.0e-11 73.9 153 34.0
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 5.7e-11 72.4 283 28.6
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 9.7e-11 71.6 100 41.0
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 2.8e-10 70.1 89 44.9
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.1e-09 68.2 272 28.3
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.6e-08 64.3 92 38.0
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 2.0e-08 63.9 215 29.8
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 7.7e-08 62.0 270 27.0
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.3e-07 61.2 254 25.2
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 3.8e-07 59.7 74 41.9
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 1.9e-06 57.4 220 26.4
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 5.5e-06 55.8 92 38.0


User provided reference genes

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