Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 8.6e-197 690.3 382 100.0
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.3e-144 516.9 386 70.7
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 2.5e-127 459.5 343 73.5
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 1.8e-122 443.4 397 62.5
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 4.5e-121 438.7 398 61.1
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.5e-119 431.8 398 61.3
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 2.7e-118 429.5 392 61.5
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.4e-117 427.2 386 61.4
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.4e-117 427.2 397 61.0
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 6.7e-117 424.9 395 59.5
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.3e-116 422.5 392 60.5
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 4.4e-116 422.2 389 61.2
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 4.8e-115 418.7 394 59.1
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.1e-114 417.5 382 60.7
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 1.5e-113 413.7 389 60.4
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 2.0e-113 413.3 384 62.8
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.0e-113 413.3 404 58.9
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 5.9e-113 411.8 391 60.9
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 8.5e-112 407.9 404 58.2
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.9e-111 406.8 386 56.5
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.9e-111 406.8 388 58.8
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.5e-111 406.4 385 60.0
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 4.2e-111 405.6 398 58.8
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 5.5e-111 405.2 390 58.2
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.2e-111 404.8 396 59.3
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 9.4e-111 404.4 388 59.5
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 1.6e-110 403.7 387 58.1
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.6e-110 403.7 386 58.8
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.6e-110 403.7 391 58.3
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.1e-110 403.3 390 60.8
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 2.1e-110 403.3 404 57.2
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 3.6e-110 402.5 391 60.1
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.6e-110 402.5 396 59.6
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 3.6e-110 402.5 377 59.7
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 8.0e-110 401.4 386 59.1
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 1.0e-109 401.0 396 61.1
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 1.0e-109 401.0 375 58.4
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 1.0e-109 401.0 389 57.3
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 2.3e-109 399.8 385 57.7
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 2.3e-109 399.8 383 58.5
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 3.0e-109 399.4 398 57.8
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 3.9e-109 399.1 396 58.3
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 3.9e-109 399.1 404 56.4
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 1.1e-108 397.5 376 58.2
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 3.3e-108 396.0 390 56.9
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 3.3e-108 396.0 381 58.5
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 5.7e-108 395.2 385 57.4
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 7.4e-108 394.8 365 59.7
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 9.7e-108 394.4 382 56.5
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 9.7e-108 394.4 384 57.8
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.7e-107 393.7 392 58.7
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.8e-107 392.9 397 56.9
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.7e-107 392.5 392 58.7
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 4.8e-107 392.1 389 56.8
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.3e-107 391.7 389 57.3
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 8.2e-107 391.3 384 57.8
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 1.4e-106 390.6 383 58.0
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 2.4e-106 389.8 384 60.9
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.1e-106 389.0 386 57.0
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 9.1e-106 387.9 381 57.2
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 1.6e-105 387.1 389 57.1
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.0e-105 386.7 382 56.8
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.6e-105 386.3 381 57.0
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 5.9e-105 385.2 380 56.8
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 5.9e-105 385.2 391 59.8
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 3.8e-104 382.5 385 55.3
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 5.0e-104 382.1 385 56.1
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.1e-103 380.9 337 63.2
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 2.5e-103 379.8 391 56.5
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 4.2e-103 379.0 374 56.7
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 4.7e-102 375.6 389 55.5
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.0e-101 374.4 390 54.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 7.5e-100 368.2 397 57.7
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 4.8e-99 365.5 392 54.3
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 4.8e-99 365.5 397 56.9
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.4e-98 364.0 392 54.3
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 4.1e-98 362.5 379 52.8
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 5.4e-98 362.1 386 55.7
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 2.0e-97 360.1 379 53.8
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 8.5e-96 354.8 336 58.3
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 2.5e-95 353.2 382 53.7
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 3.2e-95 352.8 379 53.3
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 7.2e-95 351.7 376 53.5
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 1.2e-94 350.9 375 52.8
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 4.7e-94 349.0 380 53.2
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 8.0e-94 348.2 380 53.2
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 8.0e-94 348.2 381 52.5
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 2.3e-93 346.7 376 52.4
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 2.3e-93 346.7 382 54.2
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 3.0e-93 346.3 378 51.9
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 4.0e-93 345.9 374 55.6
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 4.0e-93 345.9 380 53.7
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 5.2e-93 345.5 380 52.6
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 8.8e-93 344.7 380 53.4
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 8.8e-93 344.7 381 52.0
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 2.0e-92 343.6 377 52.0
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 5.7e-92 342.0 377 51.7
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 5.7e-92 342.0 376 52.4
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 9.8e-92 341.3 396 53.3
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 9.8e-92 341.3 376 51.6
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 6.3e-91 338.6 381 51.2
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.1e-90 335.9 377 51.5
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 5.4e-90 335.5 401 49.6
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 6.6e-88 328.6 380 50.8
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 2.5e-87 326.6 331 52.9
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 4.2e-87 325.9 287 62.4
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 2.1e-86 323.6 391 51.9
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 2.0e-84 317.0 379 51.2
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 4.9e-83 312.4 401 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.4e-82 310.8 335 50.7
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 5.0e-80 302.4 336 52.4
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 1.2e-76 291.2 365 50.4
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 1.2e-76 291.2 365 50.4
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 9.8e-76 288.1 327 49.8
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.6e-73 280.8 289 55.4
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.9e-71 273.9 286 56.6
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.5e-68 264.2 205 63.9
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.0e-64 251.5 376 43.6
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 8.6e-64 248.4 165 73.3
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 8.6e-56 221.9 291 47.4
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.9e-55 220.7 291 47.1
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 3.9e-48 196.4 219 51.6
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 2.4e-45 187.2 200 65.0
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 6.4e-43 179.1 205 51.2
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 2.1e-41 174.1 91 91.2
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.3e-38 164.9 279 36.9
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 1.5e-31 141.4 189 40.2
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.1e-29 135.2 142 53.5
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 3.1e-29 133.7 372 33.6
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.5e-28 131.3 182 46.2
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 3.5e-25 120.2 153 51.0
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 1.1e-21 108.6 166 45.2
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.1e-21 106.7 85 64.7
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 3.4e-20 103.6 111 51.4
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 7.4e-15 85.9 82 53.7
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 5.0e-11 73.2 158 27.8
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.6e-09 68.2 192 29.7
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 6.1e-09 66.2 53 67.9
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.4e-08 65.1 41 70.7
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 3.9e-08 63.5 52 63.5
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 4.3e-07 60.1 165 27.9
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 7.4e-07 59.3 65 55.4


User provided reference genes

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