Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 4.8e-55 217.6 112 100.0
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.4e-37 158.3 116 75.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.9e-36 155.2 114 75.4
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.1e-32 143.3 116 69.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.1e-30 136.7 115 65.2
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.5e-29 132.9 117 65.8
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 7.7e-29 130.6 116 63.8
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.0e-28 130.2 117 65.8
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.7e-28 129.4 117 62.4
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.8e-28 128.3 118 61.9
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 5.0e-28 127.9 116 62.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.5e-28 127.5 118 62.7
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 3.2e-27 125.2 116 58.6
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 4.2e-27 124.8 116 61.2
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 5.5e-27 124.4 115 60.0
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 7.2e-27 124.0 118 59.3
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 7.2e-27 124.0 116 61.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 9.4e-27 123.6 116 61.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 9.4e-27 123.6 121 62.0
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.6e-26 122.9 119 63.0
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.1e-26 122.5 119 63.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 2.7e-26 122.1 115 60.0
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 3.6e-26 121.7 116 59.5
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 6.1e-26 120.9 115 59.1
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 6.1e-26 120.9 111 60.4
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.4e-25 119.8 111 57.7
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.4e-25 119.8 115 59.1
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.4e-25 119.8 115 59.1
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 3.9e-25 118.2 108 62.0
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.9e-25 118.2 116 58.6
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.9e-25 118.2 112 59.8
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 5.2e-25 117.9 115 60.0
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 5.2e-25 117.9 118 55.1
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 6.7e-25 117.5 116 57.8
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 6.7e-25 117.5 117 58.1
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 6.7e-25 117.5 121 57.9
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 6.7e-25 117.5 115 61.7
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.1e-24 116.7 111 61.3
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.5e-24 116.3 113 58.4
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.5e-24 116.3 116 60.3
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 2.0e-24 115.9 118 56.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 2.6e-24 115.5 118 57.6
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 2.6e-24 115.5 114 59.6
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.4e-24 114.8 113 60.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.4e-24 114.8 113 60.2
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 5.7e-24 114.4 118 57.6
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 5.7e-24 114.4 120 58.3
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.3e-23 113.2 115 58.3
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.7e-23 112.8 117 58.1
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.7e-23 112.8 111 56.8
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 1.7e-23 112.8 112 59.8
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.8e-23 112.1 110 58.2
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.8e-23 112.1 119 58.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.1e-22 110.2 125 57.6
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 55.5
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.1e-22 110.2 118 55.9
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.4e-22 109.8 120 53.3
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.8e-22 109.4 113 57.5
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.4e-22 109.0 115 53.9
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 4.1e-22 108.2 115 53.9
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.1e-22 108.2 115 53.9
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 4.1e-22 108.2 121 59.5
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 5.3e-22 107.8 116 56.0
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 5.3e-22 107.8 119 55.5
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.6e-21 106.3 106 60.4
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.6e-21 106.3 116 54.3
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.0e-21 105.9 123 50.4
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 5.9e-21 104.4 113 54.0
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 7.7e-21 104.0 106 56.6
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 7.7e-21 104.0 119 55.5
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 1.0e-20 103.6 121 55.4
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 1.3e-20 103.2 122 56.6
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 2.2e-20 102.4 112 53.6
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 2.9e-20 102.1 112 52.7
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.9e-20 102.1 104 54.8
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 5.0e-20 101.3 102 58.8
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 5.0e-20 101.3 119 58.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.1e-19 100.1 120 51.7
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.5e-19 99.0 108 56.5
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 2.5e-19 99.0 116 56.0
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 3.2e-19 98.6 119 50.4
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 4.2e-19 98.2 113 52.2
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 4.2e-19 98.2 153 47.1
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 5.5e-19 97.8 118 50.8
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 7.2e-19 97.4 113 54.0
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 9.4e-19 97.1 105 54.3
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 9.4e-19 97.1 111 55.9
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.2e-18 96.7 112 56.2
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.6e-18 96.3 112 54.5
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 2.1e-18 95.9 116 53.4
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 2.7e-18 95.5 112 55.4
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 3.6e-18 95.1 111 55.9
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 3.6e-18 95.1 107 54.2
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 3.6e-18 95.1 115 56.5
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 6.1e-18 94.4 116 53.4
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 6.1e-18 94.4 116 53.4
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 6.1e-18 94.4 112 55.4
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 8.0e-18 94.0 109 55.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 8.0e-18 94.0 109 55.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 8.0e-18 94.0 109 55.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.0e-17 93.6 120 48.3
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-17 91.7 105 52.4
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 4.0e-17 91.7 105 52.4
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 5.2e-17 91.3 114 53.5
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 5.2e-17 91.3 113 54.0
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 5.2e-17 91.3 113 49.6
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.2e-16 90.1 102 51.0
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.2e-16 90.1 109 51.4
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 3.3e-16 88.6 112 51.8
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 7.5e-16 87.4 112 51.8
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 7.5e-16 87.4 112 51.8
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 7.5e-16 87.4 112 51.8
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 9.7e-16 87.0 111 52.3
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.7e-15 86.3 111 51.4
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.7e-15 86.3 103 53.4
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 3.7e-15 85.1 119 45.4
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.4e-14 83.2 118 44.9
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.5e-13 78.6 104 46.2
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 3.5e-13 78.6 87 54.0
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 4.5e-13 78.2 75 61.3
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.9e-13 77.8 69 60.9
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.9e-13 77.8 69 60.9
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.3e-12 76.6 116 44.8
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.3e-12 76.6 120 44.2
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.8e-12 75.1 104 51.0
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.8e-12 75.1 115 45.2
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 3.2e-11 72.0 69 60.9
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.5e-11 71.2 115 40.0
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 9.4e-11 70.5 115 40.0
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.2e-10 70.1 70 54.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.2e-10 70.1 83 49.4
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 3.6e-10 68.6 87 47.1
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 6.1e-10 67.8 47 74.5
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.0e-10 67.4 77 49.4
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 8.0e-10 67.4 87 48.3
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 5.2e-09 64.7 116 38.8
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 8.8e-09 63.9 112 41.1
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.2e-08 63.5 195 32.3
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 7.5e-08 60.8 44 63.6
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.3e-07 60.1 101 43.6
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 3.1e-06 55.5 39 79.5
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 3.1e-06 55.5 78 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 5.4e-06 54.7 101 39.6
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 5.4e-06 54.7 66 48.5


User provided reference genes

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