Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 4.6e-91 337.8 164 100.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 3.3e-65 251.9 149 83.9
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 4.5e-62 241.5 130 86.9
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.3e-61 240.0 126 89.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 5.0e-61 238.0 126 86.5
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 5.0e-61 238.0 126 88.9
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 1.1e-60 236.9 126 88.9
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.9e-60 236.1 128 85.2
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.9e-60 236.1 126 85.7
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.5e-60 235.7 126 86.5
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 2.5e-60 235.7 126 88.1
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 3.2e-60 235.3 130 83.1
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.2e-60 235.3 126 86.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.2e-60 235.3 126 87.3
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.2e-60 235.0 126 85.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 4.2e-60 235.0 126 87.3
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 4.2e-60 235.0 126 87.3
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 4.2e-60 235.0 126 85.7
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.2e-60 235.0 126 86.5
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 5.5e-60 234.6 126 86.5
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 7.2e-60 234.2 126 86.5
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.2e-59 233.4 126 85.7
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.2e-59 233.4 126 85.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.2e-59 233.4 126 88.1
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-59 233.0 129 83.7
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.6e-59 233.0 126 86.5
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-59 232.6 126 84.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.1e-59 232.6 126 84.9
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 2.1e-59 232.6 126 85.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.1e-59 232.6 125 86.4
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 2.7e-59 232.3 126 86.5
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.7e-59 232.3 126 86.5
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 2.7e-59 232.3 126 84.9
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.6e-59 231.9 126 84.9
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 4.7e-59 231.5 124 87.1
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.7e-59 231.5 127 87.4
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 6.1e-59 231.1 127 86.6
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 8.0e-59 230.7 125 84.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 8.0e-59 230.7 114 93.9
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 1.4e-58 229.9 126 84.9
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.4e-58 229.9 125 86.4
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.4e-58 229.9 125 84.8
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.8e-58 229.6 133 82.0
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 2.3e-58 229.2 126 85.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 2.3e-58 229.2 126 85.7
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 4.0e-58 228.4 126 83.3
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 4.0e-58 228.4 126 83.3
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.0e-58 228.4 124 84.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 4.0e-58 228.4 126 85.7
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 5.2e-58 228.0 126 83.3
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 5.2e-58 228.0 126 83.3
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 5.2e-58 228.0 126 83.3
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 5.2e-58 228.0 126 84.1
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 5.2e-58 228.0 126 84.9
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 5.2e-58 228.0 126 83.3
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 6.8e-58 227.6 126 86.5
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 8.8e-58 227.3 126 86.5
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 8.8e-58 227.3 126 86.5
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.8e-58 227.3 126 84.1
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.5e-57 226.5 125 83.2
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.5e-57 226.5 125 83.2
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.5e-57 226.5 124 84.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 1.5e-57 226.5 126 84.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.0e-57 226.1 126 83.3
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.4e-57 225.3 125 83.2
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 4.4e-57 224.9 126 83.3
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.4e-57 224.9 126 83.3
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 5.7e-57 224.6 127 83.5
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 5.7e-57 224.6 126 82.5
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 7.5e-57 224.2 126 82.5
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 9.8e-57 223.8 126 83.3
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 9.8e-57 223.8 126 83.3
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.7e-56 223.0 126 83.3
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.2e-56 222.6 127 85.0
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 2.2e-56 222.6 148 72.3
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 2.8e-56 222.2 126 82.5
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 2.8e-56 222.2 126 82.5
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 4.8e-56 221.5 126 82.5
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.8e-56 221.5 126 83.3
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 6.3e-56 221.1 126 81.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 6.3e-56 221.1 126 82.5
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 8.3e-56 220.7 127 82.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.4e-55 219.9 126 80.2
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 1.4e-55 219.9 126 82.5
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.4e-55 219.9 126 82.5
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 2.4e-55 219.2 126 83.3
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 3.1e-55 218.8 140 75.0
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.1e-55 218.8 126 81.7
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 4.1e-55 218.4 126 83.3
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 4.1e-55 218.4 126 83.3
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.4e-55 218.0 125 81.6
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.1e-55 217.2 125 81.6
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 9.1e-55 217.2 126 81.0
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.2e-54 216.9 126 82.5
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 1.2e-54 216.9 126 80.2
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.0e-54 216.1 126 82.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.0e-54 216.1 126 81.0
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.3e-53 213.4 126 78.6
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 8.6e-53 210.7 126 76.2
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-52 210.3 126 77.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.1e-52 210.3 126 75.4
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.5e-52 209.1 124 79.0
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.7e-51 204.9 126 78.6
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.0e-51 204.1 112 85.7
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.4e-50 203.4 126 73.8
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.8e-50 203.0 126 76.2
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 3.0e-50 202.2 107 88.8
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.5e-49 199.9 126 75.4
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 5.7e-49 198.0 111 85.6
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 9.8e-49 197.2 107 86.0
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.2e-48 196.1 112 83.9
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.8e-48 195.7 112 81.2
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 2.8e-48 195.7 109 83.5
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 3.7e-48 195.3 107 85.0
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 8.3e-48 194.1 107 84.1
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.4e-47 193.4 126 69.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 3.1e-47 192.2 94 91.5
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.1e-47 192.2 112 79.5
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.1e-47 192.2 107 82.2
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 5.4e-47 191.4 107 86.0
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 9.2e-47 190.7 107 84.1
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.7e-46 189.1 93 88.2
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.7e-46 189.1 107 80.4
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 5.9e-46 188.0 104 85.6
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.3e-45 186.8 94 87.2
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 5.0e-45 184.9 107 79.4
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.1e-44 183.7 107 80.4
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.2e-40 169.5 139 62.6
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.2e-39 165.6 126 67.5
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 7.8e-38 161.0 122 59.8
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.0e-37 159.1 124 63.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-34 150.6 141 55.3
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 4.0e-34 148.7 75 84.0
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 1.2e-33 147.1 126 61.9
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.0e-33 146.4 101 62.4
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.2e-31 139.0 75 89.3
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 4.1e-31 138.7 80 81.2
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 3.5e-30 135.6 118 55.9
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 6.6e-29 131.3 126 55.6
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-26 123.2 79 69.6
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.2e-25 120.6 86 68.6
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.7e-24 116.7 88 68.2
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.2e-24 116.3 86 65.1
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.9e-23 113.2 91 54.9
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 1.9e-23 113.2 63 82.5
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 7.1e-23 111.3 67 76.1
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.6e-22 110.2 75 70.7
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 3.5e-22 109.0 66 74.2
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-19 100.5 95 55.8
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 6.8e-18 94.7 72 69.4
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-17 94.0 75 68.0
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 2.6e-17 92.8 79 54.4
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 8.4e-16 87.8 43 90.7
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.4e-15 87.0 94 45.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.9e-08 62.8 45 71.1
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 3.2e-07 59.3 42 73.8
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 3.2e-07 59.3 106 36.8


User provided reference genes

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