Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0394551 Helianthus annuus HOM05D001221 ORTHO05D006671 5.8e-52 207.2 100 100.0
ECA233G4771 Erigeron canadensis HOM05D001221 ORTHO05D006671 8.6e-40 166.8 99 75.8
Lsat_1_v5_gn_6_5540 Lactuca sativa HOM05D001221 ORTHO05D006671 3.6e-38 161.4 99 73.7
Lsat_1_v5_gn_6_86460 Lactuca sativa HOM05D001221 ORTHO05D006671 8.9e-37 156.8 99 70.7
Lsat_1_v5_gn_3_6400 Lactuca sativa HOM05D001221 ORTHO05D006671 1.5e-36 156.0 99 73.7
ECA246G3866 Erigeron canadensis HOM05D001221 ORTHO05D006671 4.4e-36 154.5 99 70.7
HanXRQChr17g0533191 Helianthus annuus HOM05D001221 ORTHO05D006671 1.3e-35 152.9 99 70.7
ECA240G1733 Erigeron canadensis HOM05D001221 ORTHO05D006671 1.7e-35 152.5 99 68.7
CiPaw.11G133600 Carya illinoinensis HOM05D001221 ORTHO05D006671 3.8e-35 151.4 99 66.7
Oeu011041.1 Olea europaea HOM05D001221 ORTHO05D006671 4.9e-35 151.0 99 65.7
Lj4g0007712 Lotus japonicus HOM05D001221 ORTHO05D006671 1.9e-34 149.1 99 66.7
Eucgr.E00629 Eucalyptus grandis HOM05D001221 ORTHO05D006671 3.2e-34 148.3 99 63.6
DCAR_008375 Daucus carota HOM05D001221 ORTHO05D006671 4.2e-34 147.9 99 64.6
Cfa012211 Carpinus fangiana HOM05D001221 ORTHO05D006671 7.1e-34 147.1 99 65.7
CSS0031672 Camellia sinensis var. sinensis HOM05D001221 ORTHO05D006671 1.2e-33 146.4 99 65.7
Dinv38928 Davidia involucrata HOM05D001221 ORTHO05D006671 1.2e-33 146.4 99 65.7
Haze_08799 Corylus avellana HOM05D001221 ORTHO05D006671 1.6e-33 146.0 99 64.6
Cpa.g.sc214.16 Carica papaya HOM05D001221 ORTHO05D006671 6.0e-33 144.1 99 63.6
Cc08_g14890 Coffea canephora HOM05D001221 ORTHO05D006671 6.0e-33 144.1 100 66.0
HanXRQChr03g0086851 Helianthus annuus HOM05D001221 ORTHO05D006671 6.0e-33 144.1 99 65.7
Dinv37627 Davidia involucrata HOM05D001221 ORTHO05D006671 1.0e-32 143.3 99 64.6
Hma1.2p1_1123F.1_g259480 Hydrangea macrophylla HOM05D001221 ORTHO05D006671 1.0e-32 143.3 99 63.6
Peaxi162Scf00102g00163 Petunia axillaris HOM05D001221 ORTHO05D006671 1.3e-32 142.9 99 65.7
Rhsim02G0232900 Rhododendron simsii HOM05D001221 ORTHO05D006671 1.3e-32 142.9 99 62.6
SalBow1G2669 Salvia bowleyana HOM05D001221 ORTHO05D006671 1.3e-32 142.9 99 63.6
Nitab4.5_0002975g0030 Nicotiana tabacum HOM05D001221 ORTHO05D006671 1.7e-32 142.5 99 64.6
RhsimUnG0159800 Rhododendron simsii HOM05D001221 ORTHO05D006671 1.7e-32 142.5 99 63.6
TAR375G0548 Trochodendron aralioides HOM05D001221 ORTHO05D006671 2.3e-32 142.1 99 63.6
Actinidia01996 Actinidia chinensis HOM05D001221 ORTHO05D006671 3.0e-32 141.7 99 62.6
Actinidia14572 Actinidia chinensis HOM05D001221 ORTHO05D006671 3.0e-32 141.7 99 62.6
QL12p032573 Quercus lobata HOM05D001221 ORTHO05D006671 3.0e-32 141.7 99 60.6
PGSC0003DMG400005822 Solanum tuberosum HOM05D001221 ORTHO05D006671 3.0e-32 141.7 99 64.6
TAR374G1287 Trochodendron aralioides HOM05D001221 ORTHO05D006671 3.0e-32 141.7 99 61.6
Medtr8g098485 Medicago truncatula HOM05D001221 ORTHO05D006671 3.9e-32 141.4 100 63.0
Solyc08g008070.1 Solanum lycopersicum HOM05D001221 ORTHO05D006671 3.9e-32 141.4 99 65.7
MSTRG.25621 Avicennia marina HOM05D001221 ORTHO05D006671 5.1e-32 141.0 99 60.6
CAN.G792.76 Capsicum annuum HOM05D001221 ORTHO05D006671 5.1e-32 141.0 99 64.6
Nitab4.5_0001615g0010 Nicotiana tabacum HOM05D001221 ORTHO05D006671 6.6e-32 140.6 99 63.6
Sopen08g003940 Solanum pennellii HOM05D001221 ORTHO05D006671 6.6e-32 140.6 99 64.6
Atru.chr9.2167 Acer truncatum HOM05D001221 ORTHO05D006671 8.7e-32 140.2 101 63.4
Lalb_Chr09g0332921 Lupinus albus HOM05D001221 ORTHO05D006671 8.7e-32 140.2 99 60.6
Phvul.002G290800 Phaseolus vulgaris HOM05D001221 ORTHO05D006671 1.1e-31 139.8 100 62.0
GSVIVG01019733001 Vitis vinifera HOM05D001221 ORTHO05D006671 1.5e-31 139.4 99 62.6
Glyma.05G209000 Glycine max HOM05D001221 ORTHO05D006671 1.9e-31 139.0 100 62.0
MD14G1107400 Malus domestica HOM05D001221 ORTHO05D006671 1.9e-31 139.0 99 63.6
PGR042G0854 Punica granatum HOM05D001221 ORTHO05D006671 1.9e-31 139.0 99 63.6
Gohir.A03G017600 Gossypium hirsutum HOM05D001221 ORTHO05D006671 2.5e-31 138.7 103 61.2
Gohir.D03G150432 Gossypium hirsutum HOM05D001221 ORTHO05D006671 2.5e-31 138.7 103 60.2
MD06G1086200 Malus domestica HOM05D001221 ORTHO05D006671 3.3e-31 138.3 99 62.6
TWI60G1420 Tripterygium wilfordii HOM05D001221 ORTHO05D006671 3.3e-31 138.3 101 61.4
Actinidia33749 Actinidia chinensis HOM05D001221 ORTHO05D006671 4.3e-31 137.9 99 62.6
SGA_v2.0_scaffold144G35934 Striga asiatica HOM05D001221 ORTHO05D006671 4.3e-31 137.9 102 63.7
Sabra01G0077400 Salix brachista HOM05D001221 ORTHO05D006671 5.6e-31 137.5 101 60.4
TPR.G12879 Trifolium pratense HOM05D001221 ORTHO05D006671 5.6e-31 137.5 100 62.0
Gorai.003G157600 Gossypium raimondii HOM05D001221 ORTHO05D006671 7.3e-31 137.1 103 59.2
Peaxi162Scf00119g00136 Petunia axillaris HOM05D001221 ORTHO05D006671 7.3e-31 137.1 100 64.0
Prupe.5G102800 Prunus persica HOM05D001221 ORTHO05D006671 7.3e-31 137.1 99 64.6
Manes.02G020701 Manihot esculenta HOM05D001221 ORTHO05D006671 9.6e-31 136.7 101 59.4
RcHm_v2.0_Chr7g0197241 Rosa chinensis HOM05D001221 ORTHO05D006671 9.6e-31 136.7 99 61.6
Sabra03G0091900 Salix brachista HOM05D001221 ORTHO05D006671 9.6e-31 136.7 101 61.4
CANSAT21G0250 Cannabis sativa HOM05D001221 ORTHO05D006671 1.3e-30 136.3 100 60.0
DCAR_004622 Daucus carota HOM05D001221 ORTHO05D006671 1.3e-30 136.3 99 58.6
Thecc.03G281300 Theobroma cacao HOM05D001221 ORTHO05D006671 1.3e-30 136.3 107 59.8
CAN.G774.58 Capsicum annuum HOM05D001221 ORTHO05D006671 1.6e-30 136.0 98 62.2
Ca_17519_v3 Cicer arietinum L. HOM05D001221 ORTHO05D006671 1.6e-30 136.0 100 61.0
Potri.003G129300 Populus trichocarpa HOM05D001221 ORTHO05D006671 1.6e-30 136.0 101 61.4
Glyma.08G015700 Glycine max HOM05D001221 ORTHO05D006671 2.1e-30 135.6 102 60.8
Potri.001G102300 Populus trichocarpa HOM05D001221 ORTHO05D006671 2.1e-30 135.6 101 60.4
TAR629G2779 Trochodendron aralioides HOM05D001221 ORTHO05D006671 2.1e-30 135.6 99 60.6
COL.COLO4_34488 Corchorus olitorius HOM05D001221 ORTHO05D006671 2.8e-30 135.2 108 58.3
CsaV3_5G002700 Cucumis sativus L. HOM05D001221 ORTHO05D006671 2.8e-30 135.2 99 62.6
MELO3C005687.2 Cucumis melo HOM05D001221 ORTHO05D006671 3.6e-30 134.8 99 62.6
FvH4_5g02710 Fragaria vesca HOM05D001221 ORTHO05D006671 3.6e-30 134.8 101 60.4
FAN18G1676 Fragaria x ananassa HOM05D001221 ORTHO05D006671 3.6e-30 134.8 101 60.4
FAN18G3923 Fragaria x ananassa HOM05D001221 ORTHO05D006671 3.6e-30 134.8 101 60.4
Lalb_Chr16g0390061 Lupinus albus HOM05D001221 ORTHO05D006671 3.6e-30 134.8 99 58.6
ClCG01G002590 Citrullus lanatus HOM05D001221 ORTHO05D006671 4.8e-30 134.4 99 61.6
Duzib205G0255 Durio zibethinus HOM05D001221 ORTHO05D006671 4.8e-30 134.4 103 61.2
FAN08G0663 Fragaria x ananassa HOM05D001221 ORTHO05D006671 4.8e-30 134.4 101 60.4
HanXRQChr13g0416331 Helianthus annuus HOM05D001221 ORTHO05D006671 6.2e-30 134.0 102 63.7
Solyc08g081230.1 Solanum lycopersicum HOM05D001221 ORTHO05D006671 6.2e-30 134.0 99 61.6
Sopen08g029540 Solanum pennellii HOM05D001221 ORTHO05D006671 6.2e-30 134.0 99 61.6
PGSC0003DMG400012201 Solanum tuberosum HOM05D001221 ORTHO05D006671 8.1e-30 133.7 99 61.6
FAN04G0472 Fragaria x ananassa HOM05D001221 ORTHO05D006671 1.1e-29 133.3 101 60.4
Sed0000398 Sechium edule HOM05D001221 ORTHO05D006671 1.1e-29 133.3 99 60.6
FAN13G2860 Fragaria x ananassa HOM05D001221 ORTHO05D006671 1.4e-29 132.9 101 59.4
PGR031G0524 Punica granatum HOM05D001221 ORTHO05D006671 1.4e-29 132.9 99 58.6
VMungo0251G3060 Vigna mungo HOM05D001221 ORTHO05D006671 1.8e-29 132.5 100 60.0
Aqoxy7G00283 Aquilegia oxysepala HOM05D001221 ORTHO05D006671 3.1e-29 131.7 99 61.6
Ciclev10020033m.g Citrus clementina HOM05D001221 ORTHO05D006671 3.1e-29 131.7 100 59.0
THA.LOC104809381 Tarenaya hassleriana HOM05D001221 ORTHO05D006671 5.3e-29 131.0 99 54.5
Migut.E01082 Erythranthe guttata HOM05D001221 ORTHO05D006671 6.9e-29 130.6 100 60.0
AUR62010699 Chenopodium quinoa HOM05D001221 ORTHO05D006671 9.0e-29 130.2 99 55.6
PSO478G1078 Papaver somniferum HOM05D001221 ORTHO05D006671 9.0e-29 130.2 99 56.6
Duzib068G0932 Durio zibethinus HOM05D001221 ORTHO05D006671 1.5e-28 129.4 106 58.5
Psat7g032360 Pisum sativum HOM05D001221 ORTHO05D006671 1.5e-28 129.4 93 62.4
EL10Ac5g12792 Beta vulgaris HOM05D001221 ORTHO05D006671 2.6e-28 128.6 99 53.5
Ah.05g180400 Amaranthus hybridus HOM05D001221 ORTHO05D006671 4.4e-28 127.9 99 53.5
Carub.0007s3416 Capsella rubella HOM05D001221 ORTHO05D006671 4.4e-28 127.9 100 58.0
AL7G48110 Arabidopsis lyrata HOM05D001221 ORTHO05D006671 5.8e-28 127.5 99 56.6
AUR62017186 Chenopodium quinoa HOM05D001221 ORTHO05D006671 7.6e-28 127.1 99 55.6
CARHR212990 Cardamine hirsuta HOM05D001221 ORTHO05D006671 9.9e-28 126.7 100 57.0
CDE06G2128 Ceratophyllum demersum HOM05D001221 ORTHO05D006671 9.9e-28 126.7 99 56.6
Gorai.008G247800 Gossypium raimondii HOM05D001221 ORTHO05D006671 9.9e-28 126.7 107 55.1
PSO782G4433 Papaver somniferum HOM05D001221 ORTHO05D006671 9.9e-28 126.7 99 55.6
Gohir.A12G230400 Gossypium hirsutum HOM05D001221 ORTHO05D006671 2.2e-27 125.6 107 54.2
Gohir.D12G231500 Gossypium hirsutum HOM05D001221 ORTHO05D006671 2.2e-27 125.6 107 54.2
Thhalv10027773m.g Eutrema salsugineum HOM05D001221 ORTHO05D006671 3.8e-27 124.8 99 55.6
Lsat_1_v5_gn_4_91161 Lactuca sativa HOM05D000643 ORTHO05D000663 3.8e-27 124.8 99 65.7
MBI18_g02845_MAGBIO Magnolia biondii HOM05D001221 ORTHO05D006671 4.9e-27 124.4 99 58.6
RhsimUnG0159500 Rhododendron simsii HOM05D001221 ORTHO05D002870 4.9e-27 124.4 86 61.6
Sp7g00610 Schrenkiella parvula HOM05D001221 ORTHO05D006671 7.1e-26 120.6 100 55.0
SpUn0010_0090 Schrenkiella parvula HOM05D001221 ORTHO05D006671 7.1e-26 120.6 100 55.0
MBI17_g35257_MAGBIO Magnolia biondii HOM05D001221 ORTHO05D006671 1.2e-25 119.8 100 54.0
AT5G41330 Arabidopsis thaliana HOM05D001221 ORTHO05D006671 2.7e-25 118.6 99 53.5
Aa31LG9G600 Aethionema arabicum HOM05D001221 ORTHO05D006671 3.5e-25 118.2 99 56.6
SHI07159 Sapria himalayana HOM05D001221 ORTHO05D006671 3.9e-24 114.8 102 52.0
BcaC02g08967 Brassica carinata HOM05D001221 ORTHO05D006671 1.5e-23 112.8 100 52.0
unitig_26.g9699 Utricularia gibba HOM05D001597 ORTHO05D001512 1.5e-23 112.8 99 51.5
A04p14470 Brassica napus HOM05D001221 ORTHO05D006671 2.5e-23 112.1 100 52.0
BraA04t17092Z Brassica rapa HOM05D001221 ORTHO05D006671 2.5e-23 112.1 100 52.0
BcaB06g27613 Brassica carinata HOM05D001221 ORTHO05D006671 3.3e-23 111.7 101 50.5
Nn6g33391 Nelumbo nucifera HOM05D001221 ORTHO05D006671 7.3e-23 110.5 79 59.5
C04p48370 Brassica napus HOM05D001221 ORTHO05D006671 9.6e-23 110.2 100 50.0
BolC4t26430H Brassica oleracea HOM05D001221 ORTHO05D006671 9.6e-23 110.2 100 50.0
CiPaw.12G091900 Carya illinoinensis HOM05D001221 ORTHO05D006671 8.1e-22 107.1 89 57.3
HPP92_025474 Vanilla planifolia HOM05D001221 ORTHO05D006671 2.4e-21 105.5 102 52.9
Actinidia29973 Actinidia chinensis HOM05D001221 ORTHO05D006671 1.5e-20 102.8 82 56.1
ATR0680G154 Amborella trichopoda HOM05D001221 ORTHO05D006671 1.7e-19 99.4 102 49.0
Zm00001eb305940 Zea mays HOM05D001221 ORTHO05D006671 6.0e-17 90.9 108 44.4
Os07g0419200 Oryza sativa ssp. japonica HOM05D001221 ORTHO05D006671 1.5e-15 86.3 109 43.1
Lj8P219T29 Lonicera japonica HOM05D001221 ORTHO05D006671 7.4e-15 84.0 53 66.0
Zm00001eb203610 Zea mays HOM05D001221 ORTHO05D006671 8.1e-14 80.5 99 42.4
Zm00001eb371450 Zea mays HOM05D001221 ORTHO05D006671 8.1e-14 80.5 99 42.4
Sc01g0009660 Simmondsia chinensis HOM05D001221 ORTHO05D006671 2.5e-10 68.9 58 56.9
SEGI_09103 Sequoiadendron giganteum HOM05D001221 ORTHO05D006671 6.0e-09 64.3 99 29.3
Mapoly0022s0093 Marchantia polymorpha HOM05D001221 ORTHO05D009285 1.3e-08 63.2 82 34.1
Pp3c8_10260 Physcomitrium patens HOM05D001221 ORTHO05D009285 7.4e-07 57.4 77 33.8


User provided reference genes

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