Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.1e-30 136.0 70 100.0
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 5.0e-26 120.6 63 95.2
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 3.0e-23 111.3 63 87.3
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.0e-23 111.3 63 85.7
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 3.9e-23 110.9 63 85.7
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 4.4e-22 107.5 63 79.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.3e-21 105.9 63 79.4
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 2.2e-21 105.1 63 77.8
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.2e-21 105.1 63 77.8
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.8e-21 104.8 63 79.4
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.8e-21 104.8 63 79.4
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 3.7e-21 104.4 63 77.8
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 4.8e-21 104.0 63 77.8
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.3e-21 103.6 63 77.8
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.3e-21 103.6 63 77.8
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.3e-21 103.6 63 77.8
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 6.3e-21 103.6 63 77.8
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 6.3e-21 103.6 63 77.8
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 8.2e-21 103.2 63 79.4
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 8.2e-21 103.2 63 79.4
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.1e-20 102.8 63 77.8
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.1e-20 102.8 63 79.4
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.1e-20 102.8 63 76.2
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.1e-20 102.8 63 77.8
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.4e-20 102.4 63 77.8
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.4e-20 102.4 63 74.6
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.4e-20 102.4 62 77.4
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.8e-20 102.1 63 76.2
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.8e-20 102.1 63 77.8
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 1.8e-20 102.1 62 80.6
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.8e-20 102.1 63 76.2
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.8e-20 102.1 63 77.8
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.4e-20 101.7 63 76.2
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 3.1e-20 101.3 63 74.6
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 3.1e-20 101.3 63 74.6
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 3.1e-20 101.3 63 74.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 4.1e-20 100.9 63 76.2
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 4.1e-20 100.9 63 77.8
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 4.1e-20 100.9 63 74.6
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 5.3e-20 100.5 63 74.6
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 5.3e-20 100.5 63 76.2
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 5.3e-20 100.5 63 76.2
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.3e-20 100.5 63 76.2
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 5.3e-20 100.5 63 76.2
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 5.3e-20 100.5 63 76.2
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 76.2
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 74.6
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 76.2
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 74.6
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 74.6
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 79.4
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 76.2
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 6.9e-20 100.1 63 77.8
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 74.6
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 74.6
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 76.2
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 74.6
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 74.6
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 76.2
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 76.2
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 74.6
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 9.1e-20 99.8 63 77.8
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.2e-19 99.4 63 74.6
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.2e-19 99.4 63 74.6
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.2e-19 99.4 63 76.2
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 1.2e-19 99.4 63 73.0
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.2e-19 99.4 63 77.8
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.5e-19 99.0 63 74.6
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.5e-19 99.0 63 74.6
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.5e-19 99.0 63 74.6
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.5e-19 99.0 63 71.4
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.0e-19 98.6 63 76.2
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 2.0e-19 98.6 62 75.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 2.0e-19 98.6 63 76.2
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.0e-19 98.6 63 74.6
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.0e-19 98.6 63 76.2
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 2.0e-19 98.6 63 73.0
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 2.6e-19 98.2 63 74.6
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.6e-19 98.2 63 71.4
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.6e-19 98.2 63 74.6
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.6e-19 98.2 63 74.6
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.6e-19 98.2 63 76.2
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.6e-19 98.2 63 73.0
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 3.4e-19 97.8 63 76.2
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 3.4e-19 97.8 63 74.6
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 3.4e-19 97.8 63 74.6
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 3.4e-19 97.8 63 74.6
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.5e-19 97.4 63 76.2
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 4.5e-19 97.4 63 71.4
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 5.9e-19 97.1 63 73.0
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 5.9e-19 97.1 63 76.2
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 7.7e-19 96.7 63 71.4
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.7e-19 96.7 63 71.4
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.7e-19 96.7 63 71.4
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 7.7e-19 96.7 63 73.0
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 7.7e-19 96.7 63 73.0
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 7.7e-19 96.7 63 74.6
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.0e-18 96.3 63 74.6
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.7e-18 95.5 63 73.0
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.7e-18 95.5 63 73.0
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.7e-18 95.5 63 74.6
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.7e-18 95.5 63 73.0
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.2e-18 95.1 63 71.4
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.2e-18 95.1 63 73.0
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 2.2e-18 95.1 63 73.0
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 2.2e-18 95.1 63 73.0
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 2.9e-18 94.7 63 71.4
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 5.0e-18 94.0 63 73.0
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 5.0e-18 94.0 63 69.8
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.5e-18 93.6 63 69.8
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 8.5e-18 93.2 63 73.0
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.1e-17 92.8 63 71.4
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 1.1e-17 92.8 63 71.4
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.9e-17 92.0 63 71.4
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.9e-17 92.0 62 67.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.9e-17 92.0 62 67.7
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 2.5e-17 91.7 63 69.8
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 2.5e-17 91.7 63 71.4
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.5e-17 91.7 63 71.4
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.5e-17 91.7 63 69.8
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 9.4e-17 89.7 63 66.7
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 3.6e-16 87.8 66 65.2
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 4.7e-16 87.4 63 68.3
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.7e-16 87.4 63 68.3
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 8.0e-16 86.7 63 63.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 8.0e-16 86.7 63 63.5
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 2.3e-15 85.1 63 65.1
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 9.7e-14 79.7 63 63.5
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.7e-13 79.0 60 61.7
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 1.3e-10 69.3 62 58.1
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.5e-09 65.1 60 55.0
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 5.2e-07 57.4 58 48.3
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 6.7e-07 57.0 54 51.9
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.0e-06 55.5 66 51.5
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 9.7e-06 53.1 49 51.0


User provided reference genes

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