Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0392921 Helianthus annuus HOM05D000349 ORTHO05D001782 8.5e-37 156.4 73 100.0
HanXRQChr02g0056461 Helianthus annuus HOM05D000349 ORTHO05D001782 9.8e-17 89.7 46 93.5
HanXRQChr14g0449361 Helianthus annuus HOM05D000349 ORTHO05D001782 2.8e-16 88.2 46 89.1
Lsat_1_v5_gn_4_179941 Lactuca sativa HOM05D000349 ORTHO05D001782 6.3e-16 87.0 46 87.0
HanXRQChr09g0265651 Helianthus annuus HOM05D000349 ORTHO05D001782 1.4e-15 85.9 46 84.8
CANSAT64G1270 Cannabis sativa HOM05D000349 ORTHO05D001782 3.2e-15 84.7 46 82.6
arahy.Tifrunner.gnm1.ann1.EK04TZ Arachis hypogaea HOM05D000349 ORTHO05D001782 4.1e-15 84.3 46 82.6
arahy.Tifrunner.gnm1.ann1.F3F8HA Arachis hypogaea HOM05D000349 ORTHO05D001782 4.1e-15 84.3 46 82.6
Migut.H00886 Erythranthe guttata HOM05D000349 ORTHO05D001782 4.1e-15 84.3 46 87.0
Phvul.008G044100 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 4.1e-15 84.3 46 82.6
VMungo1383G3294 Vigna mungo HOM05D000349 ORTHO05D001782 4.1e-15 84.3 46 82.6
ECA232G0316 Erigeron canadensis HOM05D000349 ORTHO05D001782 5.4e-15 84.0 46 82.6
TPR.G4268 Trifolium pratense HOM05D000349 ORTHO05D001782 5.4e-15 84.0 46 84.8
CiPaw.04G020400 Carya illinoinensis HOM05D000349 ORTHO05D001782 7.0e-15 83.6 46 82.6
Glyma.09G241100 Glycine max HOM05D000349 ORTHO05D001782 7.0e-15 83.6 46 82.6
Gohir.A09G020400 Gossypium hirsutum HOM05D000349 ORTHO05D001782 7.0e-15 83.6 46 84.8
Lj1g0013791 Lotus japonicus HOM05D000349 ORTHO05D001782 7.0e-15 83.6 46 78.3
PSO478G0063 Papaver somniferum HOM05D000349 ORTHO05D001782 7.0e-15 83.6 46 82.6
TAR629G2859 Trochodendron aralioides HOM05D000349 ORTHO05D001782 7.0e-15 83.6 46 82.6
Aqoxy3G00794 Aquilegia oxysepala HOM05D000349 ORTHO05D001782 9.2e-15 83.2 46 82.6
Duzib187G1387 Durio zibethinus HOM05D000349 ORTHO05D001782 9.2e-15 83.2 46 82.6
Gohir.D09G020000 Gossypium hirsutum HOM05D000349 ORTHO05D001782 9.2e-15 83.2 46 82.6
Gorai.006G023400 Gossypium raimondii HOM05D000349 ORTHO05D001782 9.2e-15 83.2 46 82.6
arahy.Tifrunner.gnm1.ann1.00DCJZ Arachis hypogaea HOM05D000349 ORTHO05D001782 1.2e-14 82.8 47 80.9
DCAR_011167 Daucus carota HOM05D000349 ORTHO05D001782 1.2e-14 82.8 46 82.6
Glyma.18G255000 Glycine max HOM05D000349 ORTHO05D001782 1.2e-14 82.8 46 80.4
MD17G1046500 Malus domestica HOM05D000349 ORTHO05D001782 1.2e-14 82.8 46 84.8
Dinv33714 Davidia involucrata HOM05D000349 ORTHO05D001782 1.6e-14 82.4 46 82.6
Psat3g194960 Pisum sativum HOM05D000349 ORTHO05D001782 1.6e-14 82.4 46 82.6
SGA_v2.0_scaffold205G41756 Striga asiatica HOM05D000349 ORTHO05D001782 1.6e-14 82.4 46 82.6
PSO799G0001 Papaver somniferum HOM05D000349 ORTHO05D001782 2.0e-14 82.0 46 80.4
TWI32G0660 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 2.0e-14 82.0 46 80.4
arahy.Tifrunner.gnm1.ann1.9TZF0D Arachis hypogaea HOM05D000349 ORTHO05D001782 2.7e-14 81.6 48 77.1
CSS0003275 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 2.7e-14 81.6 46 80.4
CSS0031648 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 2.7e-14 81.6 46 80.4
COL.COLO4_25207 Corchorus olitorius HOM05D000349 ORTHO05D001782 2.7e-14 81.6 46 82.6
Duzib147G1141 Durio zibethinus HOM05D000349 ORTHO05D001782 2.7e-14 81.6 46 80.4
Lalb_Chr21g0318991 Lupinus albus HOM05D000349 ORTHO05D001782 2.7e-14 81.6 46 78.3
SalBow1G6919 Salvia bowleyana HOM05D000349 ORTHO05D001782 2.7e-14 81.6 46 82.6
THA.LOC104821051 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 2.7e-14 81.6 46 78.3
Cfa007504 Carpinus fangiana HOM05D000349 ORTHO05D001782 3.5e-14 81.3 45 82.2
Phvul.004G025600 Phaseolus vulgaris HOM05D000349 ORTHO05D001782 3.5e-14 81.3 46 80.4
AL3G10930 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
AT3G01310 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
BcaC09g47646 Brassica carinata HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
BNapus_Darmor_BZH_scaffold_119p00140 Brassica napus HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
BNapus_Darmor_BZH_scaffold_133p00160 Brassica napus HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
BNapus_Darmor_BZH_scaffold_97p00290 Brassica napus HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
BolC1t05950H Brassica oleracea HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
BraA01t04654Z Brassica rapa HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
Carub.0003s0084 Capsella rubella HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
CARHR075720 Cardamine hirsuta HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
Thhalv10019952m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
FvH4_6g49380 Fragaria vesca HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
FAN14G0089 Fragaria x ananassa HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
Glyma.13G065500 Glycine max HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 78.3
Lalb_Chr06g0175521 Lupinus albus HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 78.3
Prupe.3G272600 Prunus persica HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 82.6
Sp3g00780 Schrenkiella parvula HOM05D000349 ORTHO05D001782 4.6e-14 80.9 46 80.4
Cc07_g02940 Coffea canephora HOM05D000349 ORTHO05D001782 5.9e-14 80.5 46 78.3
Dinv34993 Davidia involucrata HOM05D000349 ORTHO05D001782 5.9e-14 80.5 46 80.4
Aa31LG5G12310 Aethionema arabicum HOM05D000349 ORTHO05D001782 7.8e-14 80.1 46 78.3
Ca_04097_v3 Cicer arietinum L. HOM05D000349 ORTHO05D001782 7.8e-14 80.1 46 76.1
Medtr6g011290 Medicago truncatula HOM05D000349 ORTHO05D001782 7.8e-14 80.1 46 78.3
Nitab4.5_0002265g0230 Nicotiana tabacum HOM05D000349 ORTHO05D001782 7.8e-14 80.1 46 78.3
Thecc.04G073400 Theobroma cacao HOM05D000349 ORTHO05D001782 7.8e-14 80.1 46 80.4
TWI60G0717 Tripterygium wilfordii HOM05D000349 ORTHO05D001782 7.8e-14 80.1 46 80.4
BcaB04g21424 Brassica carinata HOM05D000349 ORTHO05D001782 1.0e-13 79.7 46 78.3
Migut.K01337 Erythranthe guttata HOM05D000349 ORTHO05D001782 1.0e-13 79.7 46 80.4
MBI01_g01234_MAGBIO Magnolia biondii HOM05D000349 ORTHO05D001782 1.0e-13 79.7 47 76.6
Aa31LG11G14480 Aethionema arabicum HOM05D000349 ORTHO05D001782 1.3e-13 79.3 46 76.1
CAN.G61.36 Capsicum annuum HOM05D000349 ORTHO05D001782 1.3e-13 79.3 46 78.3
CiPaw.03G030700 Carya illinoinensis HOM05D000349 ORTHO05D001782 1.3e-13 79.3 46 78.3
FAN05G2522 Fragaria x ananassa HOM05D000349 ORTHO05D001782 1.3e-13 79.3 46 78.3
Sabra17G0068200 Salix brachista HOM05D000349 ORTHO05D001782 1.3e-13 79.3 46 76.1
TAR622G1370 Trochodendron aralioides HOM05D000349 ORTHO05D001782 1.3e-13 79.3 46 76.1
CSS0004801 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 78.3
CSS0006610 Camellia sinensis var. sinensis HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 78.3
Cpa.g.sc14.46 Carica papaya HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 76.1
FAN02G2291 Fragaria x ananassa HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 78.3
Nitab4.5_0003226g0010 Nicotiana tabacum HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 76.1
Peaxi162Scf00129g00546 Petunia axillaris HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 76.1
Potri.004G129900 Populus trichocarpa HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 76.1
PGR083G1519 Punica granatum HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 78.3
RcHm_v2.0_Chr2g0169241 Rosa chinensis HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 78.3
VMungo0464G1194 Vigna mungo HOM05D000349 ORTHO05D001782 1.7e-13 79.0 46 76.1
Ciclev10010963m.g Citrus clementina HOM05D000349 ORTHO05D001782 2.3e-13 78.6 46 73.9
Medtr7g009060 Medicago truncatula HOM05D000349 ORTHO05D001782 2.3e-13 78.6 46 80.4
Nitab4.5_0000564g0370 Nicotiana tabacum HOM05D000349 ORTHO05D001782 2.3e-13 78.6 46 76.1
Psat1g076120 Pisum sativum HOM05D000349 ORTHO05D001782 2.3e-13 78.6 46 76.1
Potri.017G076400 Populus trichocarpa HOM05D000349 ORTHO05D001782 2.3e-13 78.6 46 76.1
THA.LOC104822374 Tarenaya hassleriana HOM05D000349 ORTHO05D001782 2.3e-13 78.6 46 73.9
GSVIVG01032598001 Vitis vinifera HOM05D000349 ORTHO05D001782 2.3e-13 78.6 46 76.1
Atru.chr8.2477 Acer truncatum HOM05D000349 ORTHO05D001782 2.9e-13 78.2 46 76.1
Actinidia06066 Actinidia chinensis HOM05D000349 ORTHO05D001782 2.9e-13 78.2 46 73.9
AUR62018295 Chenopodium quinoa HOM05D000349 ORTHO05D001782 2.9e-13 78.2 71 54.9
Haze_14589 Corylus avellana HOM05D000349 ORTHO05D001782 2.9e-13 78.2 44 79.5
BcaC01g04519 Brassica carinata HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 78.3
A03p32580 Brassica napus HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 78.3
C03p39660 Brassica napus HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 78.3
BolC3t16231H Brassica oleracea HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 78.3
Carub.0006s1324 Capsella rubella HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 73.9
Manes.15G175400 Manihot esculenta HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 76.1
Nn4g23012 Nelumbo nucifera HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 73.9
Nitab4.5_0000002g0490 Nicotiana tabacum HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 73.9
Solyc02g087620.3 Solanum lycopersicum HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 76.1
Sopen02g032370 Solanum pennellii HOM05D000349 ORTHO05D001782 3.9e-13 77.8 46 76.1
AagrBONN_evm.TU.Sc2ySwM_117.3169 Anthoceros agrestis HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 76.1
BcaB01g05086 Brassica carinata HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 71.7
A03p06920 Brassica napus HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 71.7
C03p07910 Brassica napus HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 71.7
BolC3t13288H Brassica oleracea HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 71.7
BraA03t10013Z Brassica rapa HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 71.7
Glyma.19G019100 Glycine max HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 76.1
Lj2g0003395 Lotus japonicus HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 73.9
Sp6g29000 Schrenkiella parvula HOM05D000349 ORTHO05D001782 5.0e-13 77.4 46 71.7
MELO3C021971.2 Cucumis melo HOM05D000349 ORTHO05D001782 6.6e-13 77.0 46 80.4
Peaxi162Scf00700g00725 Petunia axillaris HOM05D000349 ORTHO05D001782 6.6e-13 77.0 46 76.1
SGA_v2.0_scaffold224G42952 Striga asiatica HOM05D000349 ORTHO05D001782 6.6e-13 77.0 46 76.1
BraA03t12427Z Brassica rapa HOM05D000349 ORTHO05D001782 8.6e-13 76.6 46 76.1
CARHR198250 Cardamine hirsuta HOM05D000349 ORTHO05D001782 8.6e-13 76.6 45 73.3
CsaV3_5G037840 Cucumis sativus L. HOM05D000349 ORTHO05D001782 8.6e-13 76.6 46 78.3
Eucgr.J02137 Eucalyptus grandis HOM05D000349 ORTHO05D001782 8.6e-13 76.6 46 78.3
Nn3g17106 Nelumbo nucifera HOM05D000349 ORTHO05D001782 8.6e-13 76.6 46 76.1
Pp3c3_34460 Physcomitrium patens HOM05D000349 ORTHO05D001782 8.6e-13 76.6 46 73.9
PGSC0003DMG403001309 Solanum tuberosum HOM05D000349 ORTHO05D001782 8.6e-13 76.6 46 73.9
unitig_748.g8619 Utricularia gibba HOM05D000349 ORTHO05D001782 8.6e-13 76.6 46 76.1
A10p23790 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-12 76.3 46 69.6
C09p62100 Brassica napus HOM05D000349 ORTHO05D001782 1.1e-12 76.3 46 69.6
BraA10t44442Z Brassica rapa HOM05D000349 ORTHO05D001782 1.1e-12 76.3 46 69.6
AUR62031653 Chenopodium quinoa HOM05D000349 ORTHO05D001782 1.1e-12 76.3 70 54.3
Hund13248 Selenicereus undatus HOM05D000349 ORTHO05D001782 1.1e-12 76.3 46 71.7
BcaB08g36931 Brassica carinata HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 67.4
BcaC04g18992 Brassica carinata HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 67.4
BolC9t59048H Brassica oleracea HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 67.4
Gohir.A05G364500 Gossypium hirsutum HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 76.1
Gohir.D04G050300 Gossypium hirsutum HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 76.1
Gorai.012G055700 Gossypium raimondii HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 76.1
PGR142G2597 Punica granatum HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 73.9
PGR142G4016 Punica granatum HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 73.9
unitig_32.g11779 Utricularia gibba HOM05D000349 ORTHO05D001782 1.5e-12 75.9 46 76.1
Thhalv10012536m.g Eutrema salsugineum HOM05D000349 ORTHO05D001782 1.9e-12 75.5 46 69.6
Mapoly0013s0108 Marchantia polymorpha HOM05D000349 ORTHO05D001782 1.9e-12 75.5 46 73.9
SMO164G0156 Selaginella moellendorffii HOM05D000349 ORTHO05D001782 1.9e-12 75.5 49 67.3
AL6G25890 Arabidopsis lyrata HOM05D000349 ORTHO05D001782 2.5e-12 75.1 46 69.6
AT5G15070 Arabidopsis thaliana HOM05D000349 ORTHO05D001782 2.5e-12 75.1 46 69.6
MSTRG.3314 Avicennia marina HOM05D000349 ORTHO05D001782 2.5e-12 75.1 46 73.9
CDE02G3185 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 2.5e-12 75.1 46 71.7
Pp3c12_13560 Physcomitrium patens HOM05D000349 ORTHO05D001782 2.5e-12 75.1 46 69.6
Hund15653 Selenicereus undatus HOM05D000349 ORTHO05D001782 3.3e-12 74.7 46 71.7
HPP92_012247 Vanilla planifolia HOM05D000349 ORTHO05D001782 3.3e-12 74.7 46 73.9
EL10Ac2g02930 Beta vulgaris HOM05D000349 ORTHO05D001782 4.3e-12 74.3 46 71.7
Sed0019591 Sechium edule HOM05D000349 ORTHO05D001782 4.3e-12 74.3 46 73.9
MSTRG.15490 Avicennia marina HOM05D000349 ORTHO05D001782 5.6e-12 73.9 46 71.7
CDE06G1135 Ceratophyllum demersum HOM05D000349 ORTHO05D001782 5.6e-12 73.9 46 71.7
Os01g0777700 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 5.6e-12 73.9 46 69.6
Sc10g0003860 Simmondsia chinensis HOM05D000349 ORTHO05D001782 5.6e-12 73.9 46 69.6
Ah.10g031240 Amaranthus hybridus HOM05D000349 ORTHO05D001782 7.3e-12 73.6 46 73.9
HPP92_019603 Vanilla planifolia HOM05D000349 ORTHO05D001782 9.5e-12 73.2 46 73.9
ATR0709G022 Amborella trichopoda HOM05D000349 ORTHO05D001782 1.2e-11 72.8 46 71.7
CAN.G206.106 Capsicum annuum HOM05D000349 ORTHO05D001782 1.6e-11 72.4 46 69.6
ClCG09G018430 Citrullus lanatus HOM05D000349 ORTHO05D001782 1.6e-11 72.4 45 73.3
Solyc03g058960.1 Solanum lycopersicum HOM05D000349 ORTHO05D001782 2.1e-11 72.0 46 67.4
Sopen03g012920 Solanum pennellii HOM05D000349 ORTHO05D001782 2.1e-11 72.0 46 67.4
Os03g0689100 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D001782 2.8e-11 71.6 46 71.7
Eucgr.I01909 Eucalyptus grandis HOM05D000349 ORTHO05D001782 4.7e-11 70.9 45 73.3
TPR.G4339 Trifolium pratense HOM05D000349 ORTHO05D001782 4.7e-11 70.9 54 63.0
Zm00001eb053420 Zea mays HOM05D000349 ORTHO05D001782 3.1e-10 68.2 46 65.2
FvH4_5g27000 Fragaria vesca HOM05D000349 ORTHO05D001782 4.0e-10 67.8 48 62.5
PRCOL_00003213 Prasinoderma coloniale HOM05D000349 ORTHO05D001782 5.2e-10 67.4 43 69.8
SHI24098 Sapria himalayana HOM05D000349 ORTHO05D001782 3.4e-09 64.7 45 64.4
RhsimUnG0054600 Rhododendron simsii HOM05D000349 ORTHO05D001782 9.8e-09 63.2 77 48.1
Lalb_Chr02g0159481 Lupinus albus HOM05D000349 ORTHO05D001782 6.4e-08 60.5 94 39.4
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 2.0e-06 55.5 26 92.3
Haze_26771 Corylus avellana HOM05D000349 ORTHO05D001782 3.5e-06 54.7 45 46.7
Cfa026549 Carpinus fangiana HOM05D000349 ORTHO05D001782 4.6e-06 54.3 46 52.2
vmacro05748 Vaccinium macrocarpon HOM05D000349 ORTHO05D001782 4.6e-06 54.3 30 83.3
Lj7A402G45 Lonicera japonica HOM05D000349 ORTHO05D001782 7.8e-06 53.5 30 83.3


User provided reference genes

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