Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.0e-125 453.4 224 100.0
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 5.7e-92 341.3 228 74.6
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.1e-87 327.0 224 74.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 8.9e-85 317.4 224 70.1
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.9e-71 273.1 231 61.9
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 8.1e-70 267.7 215 61.9
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.2e-68 263.8 233 57.5
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 7.5e-68 261.2 216 61.1
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 7.5e-68 261.2 222 62.2
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 4.9e-67 258.5 217 59.0
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 4.9e-67 258.5 215 60.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 6.4e-67 258.1 213 61.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.4e-67 258.1 204 62.3
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.4e-66 256.9 236 56.8
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 2.4e-66 256.1 236 56.8
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.2e-66 255.8 221 57.9
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.6e-65 253.4 210 59.0
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.6e-65 253.4 223 57.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 2.7e-65 252.7 187 64.2
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.5e-65 252.3 205 62.9
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 4.6e-65 251.9 206 61.7
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 6.0e-65 251.5 217 60.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.7e-64 250.0 202 63.9
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.7e-64 250.0 224 56.7
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.7e-64 250.0 218 59.6
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 2.3e-64 249.6 223 58.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.0e-64 249.2 207 61.4
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 3.0e-64 249.2 211 57.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 3.9e-64 248.8 216 56.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 6.6e-64 248.1 232 55.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.5e-63 246.9 221 57.0
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.5e-63 246.9 219 59.8
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.9e-63 246.5 219 59.8
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.9e-63 246.5 220 55.5
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.9e-63 246.5 209 58.9
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 3.3e-63 245.7 220 54.5
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 5.6e-63 245.0 209 58.9
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.6e-63 245.0 220 52.7
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 2.8e-62 242.7 210 58.6
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 2.8e-62 242.7 253 53.8
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 2.8e-62 242.7 212 57.5
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.6e-62 242.3 211 56.4
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 4.7e-62 241.9 218 55.0
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 6.2e-62 241.5 201 59.2
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.3e-61 239.6 218 56.0
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 3.1e-61 239.2 227 53.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 5.2e-61 238.4 212 56.1
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 6.8e-61 238.0 225 52.9
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.5e-60 236.9 225 52.9
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.0e-60 236.5 212 56.1
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 3.4e-60 235.7 225 52.0
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 4.4e-60 235.3 220 57.7
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 5.8e-60 235.0 253 50.6
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 7.6e-60 234.6 220 55.9
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.3e-59 233.8 219 57.1
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.3e-59 233.8 206 57.8
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.7e-59 233.4 223 53.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.7e-59 232.3 215 54.0
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 6.4e-59 231.5 209 53.6
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.1e-58 230.7 211 58.3
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.1e-58 230.7 209 54.5
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-58 230.3 215 53.5
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.4e-58 229.6 210 56.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.4e-58 229.6 220 51.4
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.1e-58 228.8 219 55.3
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 4.1e-58 228.8 195 57.4
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 5.4e-58 228.4 211 57.8
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.7e-56 223.4 205 57.6
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.3e-56 223.0 205 55.1
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 3.0e-56 222.6 207 56.5
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 3.0e-56 222.6 208 55.3
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 6.6e-56 221.5 216 53.7
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.6e-56 221.5 207 55.1
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.5e-55 219.5 244 50.0
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.3e-55 218.8 197 54.8
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 4.3e-55 218.8 210 53.3
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 4.3e-55 218.8 206 53.9
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 5.6e-55 218.4 218 53.7
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 5.6e-55 218.4 218 53.7
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.3e-55 218.0 203 57.1
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 9.6e-55 217.6 194 53.1
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.6e-54 216.9 208 54.8
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.6e-54 216.9 219 53.0
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.1e-54 216.5 220 51.4
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 3.6e-54 215.7 218 53.7
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 4.7e-54 215.3 205 57.1
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 6.2e-54 214.9 221 50.7
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 6.2e-54 214.9 202 55.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.1e-54 214.5 253 50.2
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.1e-53 214.2 204 54.4
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.8e-53 213.4 206 55.3
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.4e-53 213.0 220 51.4
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.4e-53 213.0 218 52.3
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 3.1e-53 212.6 215 49.8
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.1e-53 212.6 206 51.9
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 5.2e-53 211.8 206 51.5
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 6.8e-53 211.5 203 55.7
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.2e-52 210.7 253 49.8
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.0e-52 209.9 221 52.0
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.6e-52 209.5 220 50.9
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.6e-52 209.5 198 52.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 2.6e-52 209.5 229 47.2
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 7.6e-52 208.0 213 51.6
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 7.6e-52 208.0 220 50.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 9.9e-52 207.6 226 51.8
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 9.9e-52 207.6 228 50.0
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.7e-51 206.8 212 50.0
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.2e-51 206.5 217 48.8
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 3.8e-51 205.7 220 50.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 4.9e-51 205.3 225 49.3
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 6.4e-51 204.9 220 50.0
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 8.4e-51 204.5 212 50.9
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.4e-50 203.0 220 49.5
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 3.2e-50 202.6 179 57.0
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.2e-50 202.6 228 49.1
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.2e-50 202.6 257 44.0
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 4.2e-50 202.2 199 52.3
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 7.1e-50 201.4 213 52.6
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.5e-49 199.1 223 48.4
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 6.0e-49 198.4 230 47.0
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.0e-48 197.6 198 51.0
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.0e-48 196.1 214 46.7
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 5.1e-48 195.3 159 59.7
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.1e-47 194.1 218 49.1
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.5e-47 193.0 149 62.4
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.1e-45 187.6 185 51.4
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.4e-45 187.2 196 47.4
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 4.0e-45 185.7 204 46.1
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.0e-45 185.7 208 47.6
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.5e-44 183.7 200 53.0
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 7.6e-44 181.4 214 43.9
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 9.9e-44 181.0 214 44.4
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 7.1e-42 174.9 195 46.7
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.2e-41 174.1 194 46.9
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 3.5e-41 172.6 209 46.4
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 4.6e-41 172.2 209 46.4
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 4.6e-41 172.2 135 60.7
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 6.0e-41 171.8 226 42.5
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 7.9e-41 171.4 196 46.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-40 170.6 217 44.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.9e-40 169.1 217 43.8
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 8.7e-40 167.9 203 46.3
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.5e-39 166.4 217 44.2
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.5e-39 166.4 217 44.2
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 3.3e-39 166.0 208 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 7.4e-39 164.9 194 44.3
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 5.3e-37 158.7 192 44.3
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.6e-36 154.8 138 56.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 9.9e-36 154.5 213 43.7
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.3e-35 154.1 208 43.8
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.4e-35 151.4 182 45.1
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-34 151.0 208 43.3
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.4e-34 149.8 226 38.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 3.9e-32 142.5 140 50.0
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 6.9e-29 131.7 160 45.0
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.2e-26 122.5 175 39.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 4.2e-26 122.5 143 47.6
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 5.5e-26 122.1 115 53.9
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 5.1e-24 115.5 143 40.6
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 4.3e-23 112.5 142 39.4
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.3e-22 110.9 138 40.6
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-22 110.5 144 40.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 7.9e-17 91.7 153 36.6
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.9e-17 91.7 75 60.0
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 6.7e-16 88.6 110 46.4
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.2e-11 73.6 63 65.1
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.8e-11 72.8 58 58.6
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.9e-10 70.5 73 49.3
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 7.2e-10 68.6 67 50.7
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 2.1e-09 67.0 113 33.6
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.3e-08 63.5 56 55.4
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 6.7e-08 62.0 56 53.6
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 8.8e-08 61.6 113 32.7
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 4.4e-07 59.3 56 51.8
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.3e-06 55.5 62 46.8
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 8.2e-06 55.1 76 38.2


User provided reference genes

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