Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0391751 Helianthus annuus HOM05D021178 ORTHO05D025313 1.7e-134 482.6 239 100.0
HanXRQChr14g0461021 Helianthus annuus HOM05D021178 ORTHO05D025313 5.9e-127 457.6 241 94.2
Lsat_1_v5_gn_2_127320 Lactuca sativa HOM05D021178 ORTHO05D025313 2.1e-76 289.7 248 59.7
ECA238G4173 Erigeron canadensis HOM05D021178 ORTHO05D025313 1.3e-70 270.4 253 59.3
Lsat_1_v5_gn_2_127560 Lactuca sativa HOM05D021178 ORTHO05D025313 4.0e-67 258.8 246 57.3
Migut.F01217 Erythranthe guttata HOM05D000410 ORTHO05D002963 1.0e-09 68.2 68 41.2
Ah.02g110530 Amaranthus hybridus HOM05D000410 ORTHO05D003410 1.1e-08 64.7 133 32.3
Ah.02g110540 Amaranthus hybridus HOM05D000410 ORTHO05D003410 1.1e-08 64.7 133 32.3
ClCG10G002020 Citrullus lanatus HOM05D000410 ORTHO05D002963 1.9e-08 63.9 251 25.9
Rhsim09G0187700 Rhododendron simsii HOM05D000410 ORTHO05D002963 2.5e-08 63.5 254 27.6
Haze_08542 Corylus avellana HOM05D000410 ORTHO05D001514 3.2e-08 63.2 229 27.9
GSVIVG01013775001 Vitis vinifera HOM05D000410 ORTHO05D003410 4.2e-08 62.8 152 28.3
GSVIVG01020407001 Vitis vinifera HOM05D000410 ORTHO05D001514 4.2e-08 62.8 78 39.7
CARHR087440 Cardamine hirsuta HOM05D000410 ORTHO05D001514 5.5e-08 62.4 68 44.1
Ca_13585_v3 Cicer arietinum L. HOM05D000410 ORTHO05D001514 7.2e-08 62.0 80 40.0
HPP92_020690 Vanilla planifolia HOM05D000410 ORTHO05D002963 7.2e-08 62.0 75 36.0
Cfa019422 Carpinus fangiana HOM05D000410 ORTHO05D001514 9.4e-08 61.6 226 25.7
Nitab4.5_0002403g0080 Nicotiana tabacum HOM05D000410 ORTHO05D003410 9.4e-08 61.6 54 44.4
Sed0004643 Sechium edule HOM05D000410 ORTHO05D001514 9.4e-08 61.6 186 30.1
ATR1091G050 Amborella trichopoda HOM05D000410 ORTHO05D003410 1.2e-07 61.2 165 29.7
Nn2g14079 Nelumbo nucifera HOM05D000410 ORTHO05D003410 1.2e-07 61.2 166 27.7
Nn4g22722 Nelumbo nucifera HOM05D000410 ORTHO05D003410 1.2e-07 61.2 167 26.9
Oeu052001.1 Olea europaea HOM05D000410 ORTHO05D001514 1.2e-07 61.2 48 50.0
GSVIVG01007729001 Vitis vinifera HOM05D000410 ORTHO05D003410 1.2e-07 61.2 142 28.9
Phvul.002G002700 Phaseolus vulgaris HOM05D000410 ORTHO05D002963 1.6e-07 60.8 172 29.7
DCAR_017100 Daucus carota HOM05D000410 ORTHO05D002963 2.1e-07 60.5 73 37.0
Pp3c19_19700 Physcomitrium patens HOM05D000410 ORTHO05D003410 2.1e-07 60.5 170 30.0
Pp3c22_16590 Physcomitrium patens HOM05D000410 ORTHO05D003410 2.1e-07 60.5 170 28.8
Potri.001G148600 Populus trichocarpa HOM05D000410 ORTHO05D002963 2.1e-07 60.5 85 36.5
Sed0012285 Sechium edule HOM05D000410 ORTHO05D003193 2.1e-07 60.5 145 29.0
Carub.0003s1228 Capsella rubella HOM05D000410 ORTHO05D001514 2.7e-07 60.1 71 39.4
ECA236G1613 Erigeron canadensis HOM05D000410 ORTHO05D001514 2.7e-07 60.1 47 48.9
Lalb_Chr09g0324001 Lupinus albus HOM05D000410 ORTHO05D002963 2.7e-07 60.1 66 39.4
SalBow3G1281 Salvia bowleyana HOM05D000410 ORTHO05D002963 2.7e-07 60.1 70 35.7
Actinidia01022 Actinidia chinensis HOM05D000410 ORTHO05D002963 4.6e-07 59.3 263 23.6
Carub.0002s2597 Capsella rubella HOM05D000410 ORTHO05D001514 4.6e-07 59.3 174 30.5
MELO3C003360.2 Cucumis melo HOM05D000410 ORTHO05D002963 4.6e-07 59.3 155 29.0
CsaV3_3G049650 Cucumis sativus L. HOM05D000410 ORTHO05D002963 4.6e-07 59.3 155 29.0
Migut.O00095 Erythranthe guttata HOM05D000410 ORTHO05D003410 4.6e-07 59.3 156 30.8
Manes.14G016800 Manihot esculenta HOM05D000410 ORTHO05D001514 4.6e-07 59.3 78 37.2
Peaxi162Scf00255g01114 Petunia axillaris HOM05D000410 ORTHO05D003410 4.6e-07 59.3 54 40.7
AL8G11180 Arabidopsis lyrata HOM05D000410 ORTHO05D002963 6.1e-07 58.9 77 36.4
BcaB02g07201 Brassica carinata HOM05D000410 ORTHO05D001514 6.1e-07 58.9 244 25.8
CDE02G2993 Ceratophyllum demersum HOM05D000410 ORTHO05D003410 6.1e-07 58.9 205 25.4
CDE04G1820 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 6.1e-07 58.9 72 36.1
ClCG09G022560 Citrullus lanatus HOM05D000410 ORTHO05D001514 6.1e-07 58.9 52 46.2
Gohir.A01G039400 Gossypium hirsutum HOM05D000410 ORTHO05D001514 6.1e-07 58.9 181 30.9
Zm00001eb084560 Zea mays HOM05D000410 ORTHO05D002963 6.1e-07 58.9 79 38.0
AT3G12920 Arabidopsis thaliana HOM05D000410 ORTHO05D001514 7.9e-07 58.5 71 40.8
Lsat_1_v5_gn_7_71280 Lactuca sativa HOM05D000410 ORTHO05D001514 7.9e-07 58.5 51 41.2
Nn3g16829 Nelumbo nucifera HOM05D000410 ORTHO05D003410 7.9e-07 58.5 166 25.9
Peaxi162Scf00073g00199 Petunia axillaris HOM05D000410 ORTHO05D025916 7.9e-07 58.5 176 27.8
Ah.07g199690 Amaranthus hybridus HOM05D000410 ORTHO05D002963 1.0e-06 58.2 164 32.3
MSTRG.16109 Avicennia marina HOM05D000410 ORTHO05D001514 1.0e-06 58.2 47 51.1
BcaB07g30798 Brassica carinata HOM05D000410 ORTHO05D002963 1.0e-06 58.2 154 27.3
CDE12G0441 Ceratophyllum demersum HOM05D000410 ORTHO05D002963 1.0e-06 58.2 72 34.7
MELO3C012628.2 Cucumis melo HOM05D000410 ORTHO05D001514 1.0e-06 58.2 47 48.9
CsaV3_7G022700 Cucumis sativus L. HOM05D000410 ORTHO05D001514 1.0e-06 58.2 47 48.9
Glyma.11G091300 Glycine max HOM05D000410 ORTHO05D003193 1.0e-06 58.2 155 31.6
Oeu024267.1 Olea europaea HOM05D000410 ORTHO05D002963 1.0e-06 58.2 68 30.9
Potri.001G439600 Populus trichocarpa HOM05D000410 ORTHO05D001514 1.0e-06 58.2 47 48.9
Hund02750 Selenicereus undatus HOM05D000410 ORTHO05D003410 1.0e-06 58.2 58 39.7
AL2G39580 Arabidopsis lyrata HOM05D000410 ORTHO05D001514 1.4e-06 57.8 188 29.8
arahy.Tifrunner.gnm1.ann1.I4J3ZB Arachis hypogaea HOM05D000410 ORTHO05D003410 1.4e-06 57.8 259 23.2
CSS0025021 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D002963 1.4e-06 57.8 176 25.6
Cpa.g.sc76.36 Carica papaya HOM05D000410 ORTHO05D003410 1.4e-06 57.8 53 45.3
CDE02G3645 Ceratophyllum demersum HOM05D000410 ORTHO05D003410 1.4e-06 57.8 205 26.3
Gorai.003G179400 Gossypium raimondii HOM05D000410 ORTHO05D002963 1.4e-06 57.8 85 34.1
HanXRQChr13g0407871 Helianthus annuus HOM05D021178 ORTHO05D227795 1.4e-06 57.8 54 55.6
SGA_v2.0_scaffold114G31826 Striga asiatica HOM05D000410 ORTHO05D003410 1.4e-06 57.8 66 37.9
Thecc.03G014100 Theobroma cacao HOM05D000410 ORTHO05D003410 1.4e-06 57.8 142 31.7
TWI39G1106 Tripterygium wilfordii HOM05D000410 ORTHO05D001514 1.4e-06 57.8 49 49.0
C01p52230 Brassica napus HOM05D000410 ORTHO05D001514 1.8e-06 57.4 47 48.9
CiPaw.11G085800 Carya illinoinensis HOM05D000410 ORTHO05D002963 1.8e-06 57.4 78 32.1
Thhalv10000973m.g Eutrema salsugineum HOM05D000410 ORTHO05D002963 1.8e-06 57.4 79 35.4
HanXRQChr16g0504331 Helianthus annuus HOM05D000410 ORTHO05D003410 1.8e-06 57.4 54 40.7
Lalb_Chr15g0088571 Lupinus albus HOM05D000410 ORTHO05D001514 1.8e-06 57.4 77 37.7
Psat7g132320 Pisum sativum HOM05D000410 ORTHO05D001514 1.8e-06 57.4 61 37.7
PGR042G2973 Punica granatum HOM05D000410 ORTHO05D002963 1.8e-06 57.4 164 30.5
Sed0002037 Sechium edule HOM05D000410 ORTHO05D001514 1.8e-06 57.4 182 29.1
TWI31G0485 Tripterygium wilfordii HOM05D000410 ORTHO05D003193 1.8e-06 57.4 136 30.1
AT5G47050 Arabidopsis thaliana HOM05D000410 ORTHO05D002963 2.3e-06 57.0 77 35.1
MSTRG.14543 Avicennia marina HOM05D000410 ORTHO05D001514 2.3e-06 57.0 47 42.6
ClCG09G012480 Citrullus lanatus HOM05D000410 ORTHO05D002963 2.3e-06 57.0 155 27.7
FAN04G2418 Fragaria x ananassa HOM05D000410 ORTHO05D002963 2.3e-06 57.0 66 34.8
Lj4g0007315 Lotus japonicus HOM05D000410 ORTHO05D002963 2.3e-06 57.0 66 33.3
Lalb_Chr05g0214161 Lupinus albus HOM05D000410 ORTHO05D002963 2.3e-06 57.0 66 39.4
MBI11_g11957_MAGBIO Magnolia biondii HOM05D000410 ORTHO05D003410 2.3e-06 57.0 100 36.0
Sabra01G0118500 Salix brachista HOM05D000410 ORTHO05D002963 2.3e-06 57.0 82 36.6
SEGI_14364 Sequoiadendron giganteum HOM05D000410 ORTHO05D003410 2.3e-06 57.0 169 28.4
Sc01g0007850 Simmondsia chinensis HOM05D000410 ORTHO05D002963 2.3e-06 57.0 76 36.8
unitig_26.g10076 Utricularia gibba HOM05D000410 ORTHO05D001514 2.3e-06 57.0 176 29.5
VMungo1215G2465 Vigna mungo HOM05D000410 ORTHO05D002963 2.3e-06 57.0 75 33.3
Aqoxy3G02584 Aquilegia oxysepala HOM05D000410 ORTHO05D002963 3.0e-06 56.6 95 31.6
AL3G24600 Arabidopsis lyrata HOM05D000410 ORTHO05D001514 3.0e-06 56.6 83 36.1
EL10Ac5g12214 Beta vulgaris HOM05D000410 ORTHO05D002963 3.0e-06 56.6 89 34.8
ClCG02G018470 Citrullus lanatus HOM05D000410 ORTHO05D001514 3.0e-06 56.6 237 27.8
CsaV3_3G002110 Cucumis sativus L. HOM05D000410 ORTHO05D002963 3.0e-06 56.6 179 27.9
DCAR_016823 Daucus carota HOM05D000410 ORTHO05D001514 3.0e-06 56.6 54 40.7
Dinv19615 Davidia involucrata HOM05D000410 ORTHO05D001514 3.0e-06 56.6 47 46.8
Dinv20640 Davidia involucrata HOM05D000410 ORTHO05D003410 3.0e-06 56.6 52 42.3
Dinv38576 Davidia involucrata HOM05D000410 ORTHO05D003410 3.0e-06 56.6 52 42.3
Duzib268G1751 Durio zibethinus HOM05D000410 ORTHO05D001514 3.0e-06 56.6 47 46.8
HanXRQChr03g0078351 Helianthus annuus HOM05D000410 ORTHO05D001514 3.0e-06 56.6 52 42.3
Potri.011G142700 Populus trichocarpa HOM05D000410 ORTHO05D001514 3.0e-06 56.6 47 46.8
Sp2g11860 Schrenkiella parvula HOM05D000410 ORTHO05D002963 3.0e-06 56.6 79 35.4
SGA_v2.0_scaffold49G18175 Striga asiatica HOM05D000410 ORTHO05D001514 3.0e-06 56.6 47 42.6
THA.LOC104822753 Tarenaya hassleriana HOM05D000410 ORTHO05D001514 3.0e-06 56.6 162 28.4
Thecc.03G236500 Theobroma cacao HOM05D000410 ORTHO05D002963 3.0e-06 56.6 79 32.9
VMungo1215G1761 Vigna mungo HOM05D000410 ORTHO05D003410 3.0e-06 56.6 172 26.7
arahy.Tifrunner.gnm1.ann1.I0GMKU Arachis hypogaea HOM05D002339 ORTHO05D002545 3.9e-06 56.2 69 40.6
arahy.Tifrunner.gnm1.ann1.K4HSU9 Arachis hypogaea HOM05D002339 ORTHO05D002545 3.9e-06 56.2 69 40.6
A03p37880 Brassica napus HOM05D000410 ORTHO05D001514 3.9e-06 56.2 47 46.8
BraA03t12943Z Brassica rapa HOM05D000410 ORTHO05D001514 3.9e-06 56.2 47 46.8
BraA09t38905Z Brassica rapa HOM05D000410 ORTHO05D002963 3.9e-06 56.2 64 39.1
Cc04_g07510 Coffea canephora HOM05D002339 ORTHO05D002545 3.9e-06 56.2 56 41.1
COL.COLO4_06707 Corchorus olitorius HOM05D000410 ORTHO05D002963 3.9e-06 56.2 80 31.2
FAN25G0120 Fragaria x ananassa HOM05D000410 ORTHO05D001514 3.9e-06 56.2 267 25.8
Lsat_1_v5_gn_4_75020 Lactuca sativa HOM05D000410 ORTHO05D003410 3.9e-06 56.2 45 48.9
Psat4g077520 Pisum sativum HOM05D000410 ORTHO05D002963 3.9e-06 56.2 86 30.2
Prupe.4G139400 Prunus persica HOM05D000410 ORTHO05D001514 3.9e-06 56.2 47 46.8
PGR031G3665 Punica granatum HOM05D000410 ORTHO05D002963 3.9e-06 56.2 210 26.2
Sed0022078 Sechium edule HOM05D000410 ORTHO05D003193 3.9e-06 56.2 211 27.5
Solyc08g007120.3 Solanum lycopersicum HOM05D000410 ORTHO05D002963 3.9e-06 56.2 82 34.1
TAR622G1017 Trochodendron aralioides HOM05D000410 ORTHO05D003410 3.9e-06 56.2 171 26.9
AagrBONN_evm.TU.Sc2ySwM_344.1312 Anthoceros agrestis HOM05D000410 ORTHO05D003410 5.1e-06 55.8 165 29.7
arahy.Tifrunner.gnm1.ann1.D5YLID Arachis hypogaea HOM05D000410 ORTHO05D002963 5.1e-06 55.8 94 33.0
arahy.Tifrunner.gnm1.ann1.I1CICT Arachis hypogaea HOM05D000410 ORTHO05D002963 5.1e-06 55.8 94 33.0
arahy.Tifrunner.gnm1.ann1.K4A8X5 Arachis hypogaea HOM05D000410 ORTHO05D003410 5.1e-06 55.8 168 26.8
BcaB06g25500 Brassica carinata HOM05D000410 ORTHO05D001514 5.1e-06 55.8 47 46.8
BcaC05g29225 Brassica carinata HOM05D000410 ORTHO05D001514 5.1e-06 55.8 47 46.8
A05p36580 Brassica napus HOM05D000410 ORTHO05D001514 5.1e-06 55.8 47 46.8
C05p55000 Brassica napus HOM05D000410 ORTHO05D001514 5.1e-06 55.8 47 46.8
BolC5t34169H Brassica oleracea HOM05D000410 ORTHO05D001514 5.1e-06 55.8 47 46.8
BraA05t22457Z Brassica rapa HOM05D000410 ORTHO05D001514 5.1e-06 55.8 47 46.8
AUR62018798 Chenopodium quinoa HOM05D000410 ORTHO05D002963 5.1e-06 55.8 89 33.7
Gohir.D01G027200 Gossypium hirsutum HOM05D000410 ORTHO05D001514 5.1e-06 55.8 181 29.3
Gorai.002G036500 Gossypium raimondii HOM05D000410 ORTHO05D001514 5.1e-06 55.8 181 29.3
Lj2g0006332 Lotus japonicus HOM05D000410 ORTHO05D003410 5.1e-06 55.8 231 24.7
Manes.06G172200 Manihot esculenta HOM05D000410 ORTHO05D001514 5.1e-06 55.8 227 26.9
Nn4g22058 Nelumbo nucifera HOM05D000410 ORTHO05D003410 5.1e-06 55.8 94 31.9
PSO063G0040 Papaver somniferum HOM05D000410 ORTHO05D003410 5.1e-06 55.8 177 27.7
Sabra03G0055700 Salix brachista HOM05D000410 ORTHO05D002963 5.1e-06 55.8 85 35.3
TWI38G0932 Tripterygium wilfordii HOM05D000410 ORTHO05D001514 5.1e-06 55.8 54 44.4
unitig_749.g13697 Utricularia gibba HOM05D000410 ORTHO05D001514 5.1e-06 55.8 47 51.1
Atru.chr9.1140 Acer truncatum HOM05D000410 ORTHO05D002963 6.7e-06 55.5 69 36.2
C07p30690 Brassica napus HOM05D000410 ORTHO05D002963 6.7e-06 55.5 77 35.1
BolC7t43615H Brassica oleracea HOM05D000410 ORTHO05D002963 6.7e-06 55.5 77 35.1
CANSAT80G0654 Cannabis sativa HOM05D000410 ORTHO05D003410 6.7e-06 55.5 47 48.9
CiPaw.05G185900 Carya illinoinensis HOM05D000410 ORTHO05D003410 6.7e-06 55.5 87 34.5
CDE06G1997 Ceratophyllum demersum HOM05D000410 ORTHO05D003410 6.7e-06 55.5 207 23.7
DCAR_008308 Daucus carota HOM05D000410 ORTHO05D002963 6.7e-06 55.5 83 33.7
FAN13G1868 Fragaria x ananassa HOM05D000410 ORTHO05D002963 6.7e-06 55.5 66 33.3
Glyma.05G068400 Glycine max HOM05D000410 ORTHO05D002963 6.7e-06 55.5 69 34.8
Lalb_Chr01g0015931 Lupinus albus HOM05D000410 ORTHO05D001514 6.7e-06 55.5 47 46.8
Medtr4g099060 Medicago truncatula HOM05D000410 ORTHO05D002963 6.7e-06 55.5 84 34.5
Sabra16G0297100 Salix brachista HOM05D000410 ORTHO05D001514 6.7e-06 55.5 47 46.8
Sopen08g003070 Solanum pennellii HOM05D000410 ORTHO05D002963 6.7e-06 55.5 75 34.7
TPR.G19186 Trifolium pratense HOM05D000410 ORTHO05D002963 6.7e-06 55.5 86 30.2
HPP92_019554 Vanilla planifolia HOM05D000410 ORTHO05D001514 6.7e-06 55.5 230 27.0
Zm00001eb242320 Zea mays HOM05D000410 ORTHO05D001514 6.7e-06 55.5 99 35.4
Atru.chr9.2491 Acer truncatum HOM05D000410 ORTHO05D003410 8.8e-06 55.1 50 46.0
Ah.12g053780 Amaranthus hybridus HOM05D000410 ORTHO05D002963 8.8e-06 55.1 173 26.6
AT1G79110 Arabidopsis thaliana HOM05D000410 ORTHO05D001514 8.8e-06 55.1 60 46.7
BcaC03g16922 Brassica carinata HOM05D000410 ORTHO05D002963 8.8e-06 55.1 156 28.8
C02p48250 Brassica napus HOM05D000410 ORTHO05D002963 8.8e-06 55.1 156 28.8
CANSAT80G1812 Cannabis sativa HOM05D000410 ORTHO05D001514 8.8e-06 55.1 47 44.7
Carub.0001s1012 Capsella rubella HOM05D000410 ORTHO05D003410 8.8e-06 55.1 51 47.1
AUR62007204 Chenopodium quinoa HOM05D000410 ORTHO05D002963 8.8e-06 55.1 88 34.1
FvH4_5g20850 Fragaria vesca HOM05D000410 ORTHO05D002963 8.8e-06 55.1 66 33.3
FAN18G0369 Fragaria x ananassa HOM05D000410 ORTHO05D002963 8.8e-06 55.1 66 33.3
Glyma.01G029500 Glycine max HOM05D000410 ORTHO05D003410 8.8e-06 55.1 228 24.1
Glyma.01G203300 Glycine max HOM05D000410 ORTHO05D002963 8.8e-06 55.1 159 27.7
Glyma.11G039700 Glycine max HOM05D000410 ORTHO05D002963 8.8e-06 55.1 68 38.2
Glyma.17G150900 Glycine max HOM05D000410 ORTHO05D002963 8.8e-06 55.1 89 32.6
Lsat_1_v5_gn_1_16080 Lactuca sativa HOM05D002339 ORTHO05D002545 8.8e-06 55.1 56 41.1
Lj8C188T4 Lonicera japonica HOM05D000410 ORTHO05D001514 8.8e-06 55.1 47 46.8
MD06G1043600 Malus domestica HOM05D000410 ORTHO05D002963 8.8e-06 55.1 66 31.8
Potri.003G085800 Populus trichocarpa HOM05D000410 ORTHO05D002963 8.8e-06 55.1 85 35.3
QL04p073141 Quercus lobata HOM05D000410 ORTHO05D001514 8.8e-06 55.1 47 46.8
Sed0026558 Sechium edule HOM05D000410 ORTHO05D001514 8.8e-06 55.1 47 44.7
PGSC0003DMG402018151 Solanum tuberosum HOM05D000410 ORTHO05D003410 8.8e-06 55.1 78 32.1
TWI81G0043 Tripterygium wilfordii HOM05D000410 ORTHO05D002963 8.8e-06 55.1 79 30.4
HPP92_013552 Vanilla planifolia HOM05D000410 ORTHO05D003410 8.8e-06 55.1 74 39.2


User provided reference genes

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