Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 9.0e-56 219.9 105 100.0
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.2e-44 183.0 101 81.2
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 3.9e-43 177.9 105 80.0
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 7.4e-42 173.7 107 79.4
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 2.8e-41 171.8 103 79.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.5e-39 166.0 96 77.1
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 2.0e-39 165.6 102 75.5
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.5e-39 164.5 96 78.1
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.5e-39 164.5 108 75.0
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.5e-39 164.5 108 75.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 5.9e-39 164.1 105 75.2
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 5.9e-39 164.1 104 77.9
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.7e-39 163.7 96 78.1
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 7.7e-39 163.7 108 72.2
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.0e-38 163.3 96 78.1
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.0e-38 163.3 106 69.8
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.3e-38 162.9 106 71.7
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.2e-38 162.2 103 74.8
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.2e-38 162.2 106 71.7
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.9e-38 161.8 101 76.2
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 2.9e-38 161.8 99 77.8
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.8e-38 161.4 106 70.8
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 5.0e-38 161.0 106 71.7
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 5.0e-38 161.0 107 71.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 5.0e-38 161.0 107 71.0
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 5.0e-38 161.0 105 68.6
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.5e-38 160.6 99 77.8
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.5e-38 160.6 99 77.8
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 6.5e-38 160.6 106 70.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 6.5e-38 160.6 106 70.8
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 8.5e-38 160.2 106 71.7
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.1e-37 159.8 99 77.8
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.4e-37 159.5 108 70.4
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.4e-37 159.5 107 72.9
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.9e-37 159.1 100 75.0
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.9e-37 159.1 107 68.2
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.9e-37 159.1 103 72.8
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 2.5e-37 158.7 99 73.7
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.5e-37 158.7 99 73.7
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 2.5e-37 158.7 99 73.7
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 2.5e-37 158.7 99 73.7
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.5e-37 158.7 99 73.7
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.5e-37 158.7 106 69.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.5e-37 158.7 99 76.8
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.2e-37 158.3 106 69.8
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.2e-37 158.3 100 74.0
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 4.2e-37 157.9 98 73.5
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.2e-37 157.9 100 74.0
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 4.2e-37 157.9 99 76.8
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 4.2e-37 157.9 100 72.0
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 5.5e-37 157.5 93 75.3
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 5.5e-37 157.5 93 75.3
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 5.5e-37 157.5 107 71.0
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 7.2e-37 157.1 108 71.3
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 9.4e-37 156.8 88 76.1
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 9.4e-37 156.8 88 76.1
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 9.4e-37 156.8 88 76.1
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 9.4e-37 156.8 100 73.0
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.2e-36 156.4 92 73.9
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.2e-36 156.4 92 75.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.2e-36 156.4 106 67.9
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.2e-36 156.4 92 75.0
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.2e-36 156.4 107 69.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.2e-36 156.4 108 69.4
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.2e-36 156.4 92 75.0
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.6e-36 156.0 86 76.7
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.1e-36 155.6 77 84.4
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.1e-36 155.6 99 75.8
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.1e-36 155.6 97 74.2
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.7e-36 155.2 92 75.0
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.7e-36 155.2 98 72.4
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 2.7e-36 155.2 92 73.9
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.7e-36 155.2 96 75.0
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 4.7e-36 154.5 81 80.2
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 4.7e-36 154.5 81 80.2
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 4.7e-36 154.5 81 80.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.7e-36 154.5 105 68.6
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 4.7e-36 154.5 100 71.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.7e-36 154.5 97 72.2
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 4.7e-36 154.5 96 71.9
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.7e-36 154.5 86 76.7
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.7e-36 154.5 86 76.7
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 4.7e-36 154.5 100 70.0
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.1e-36 154.1 97 71.1
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 7.9e-36 153.7 108 71.3
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 7.9e-36 153.7 103 68.9
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 7.9e-36 153.7 106 68.9
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 7.9e-36 153.7 101 69.3
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.0e-35 153.3 98 71.4
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.4e-35 152.9 98 71.4
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.8e-35 152.5 108 67.6
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.8e-35 152.5 88 76.1
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.3e-35 152.1 92 72.8
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 2.3e-35 152.1 102 72.5
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.3e-35 152.1 97 70.1
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.0e-35 151.8 92 72.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.0e-35 151.8 92 72.8
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.0e-35 151.8 92 72.8
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 3.0e-35 151.8 103 68.9
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 3.0e-35 151.8 105 66.7
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 3.9e-35 151.4 105 66.7
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 3.9e-35 151.4 104 69.2
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 5.1e-35 151.0 77 81.8
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 5.1e-35 151.0 109 68.8
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 5.1e-35 151.0 103 65.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 6.7e-35 150.6 91 74.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 8.8e-35 150.2 102 68.6
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.1e-34 149.8 102 66.7
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.1e-34 149.8 101 67.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.1e-34 149.8 101 67.3
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.1e-34 149.8 105 69.5
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.5e-34 149.4 107 64.5
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.5e-34 149.4 103 67.0
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 2.6e-34 148.7 95 69.5
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.3e-34 148.3 86 73.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 4.4e-34 147.9 88 71.6
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 4.4e-34 147.9 88 77.3
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 4.4e-34 147.9 107 66.4
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 5.7e-34 147.5 95 71.6
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 5.7e-34 147.5 108 65.7
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 7.4e-34 147.1 95 68.4
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 7.4e-34 147.1 95 68.4
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 7.4e-34 147.1 95 68.4
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 9.7e-34 146.7 97 69.1
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.7e-34 146.7 101 68.3
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.7e-33 146.0 83 73.5
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 2.2e-33 145.6 87 71.3
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 2.8e-33 145.2 83 75.9
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 3.7e-33 144.8 87 74.7
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.8e-33 144.4 86 76.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 8.2e-33 143.7 86 72.1
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.1e-32 143.3 93 69.9
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.1e-32 141.7 105 63.8
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.5e-31 137.9 75 80.0
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.9e-31 137.5 99 64.6
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 7.7e-31 137.1 102 60.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.0e-30 136.7 102 60.8
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 5.0e-30 134.4 75 80.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-29 132.9 97 60.8
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 4.0e-27 124.8 82 70.7
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.7e-26 120.9 100 56.0
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 5.3e-24 114.4 56 87.5
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 3.5e-23 111.7 80 61.2
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.5e-21 105.5 60 80.0
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 9.4e-21 103.6 70 64.3
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.7e-20 102.1 92 53.3
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 8.8e-19 97.1 61 77.0
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 5.7e-18 94.4 87 50.6
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 3.7e-17 91.7 61 68.9
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.8e-16 89.4 81 53.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 4.5e-15 84.7 71 60.6
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 5.0e-14 81.3 73 47.9
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.7e-12 75.5 61 57.4
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 2.7e-12 75.5 62 54.8
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.1e-08 61.6 61 54.1


User provided reference genes

Program Settings