Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 1.3e-257 892.5 442 100.0
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 2.1e-239 832.0 440 91.1
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 1.2e-226 789.6 425 89.9
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 2.0e-213 745.7 443 80.8
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.6e-213 745.3 440 81.4
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 3.2e-211 738.4 443 80.1
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 9.2e-211 736.9 440 80.7
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.1e-210 735.7 440 80.9
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 4.3e-208 728.0 442 78.7
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 1.6e-207 726.1 443 79.2
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 4.0e-206 721.5 443 78.8
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.2e-205 719.9 440 78.2
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 3.4e-205 718.4 443 77.2
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 4.4e-205 718.0 441 77.8
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.3e-204 716.5 440 78.2
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 1.9e-203 712.6 422 81.3
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 7.8e-202 707.2 444 75.5
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 7.8e-202 707.2 437 76.9
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 1.0e-201 706.8 444 75.9
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.3e-201 706.4 443 76.3
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.7e-201 706.1 438 75.8
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 3.0e-201 705.3 439 75.4
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.9e-201 704.9 440 77.0
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 3.9e-201 704.9 442 75.3
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 8.7e-201 703.7 440 76.6
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.5e-200 703.0 442 76.7
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 2.5e-200 702.2 435 76.3
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 5.6e-200 701.0 439 76.3
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 5.6e-200 701.0 420 80.2
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 5.6e-200 701.0 441 77.1
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 7.3e-200 700.7 438 76.7
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.6e-199 699.5 438 76.3
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 2.1e-199 699.1 439 75.9
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 2.8e-199 698.7 432 76.6
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 4.8e-199 698.0 441 76.2
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.4e-198 696.4 432 76.6
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 2.4e-198 695.7 440 74.8
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 3.1e-198 695.3 438 74.7
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 3.1e-198 695.3 441 75.3
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.1e-198 695.3 443 74.3
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 1.2e-197 693.3 443 75.8
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 2.6e-197 692.2 440 76.8
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 5.8e-197 691.0 430 76.5
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 9.9e-197 690.3 439 74.9
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 9.9e-197 690.3 436 75.7
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 1.3e-196 689.9 438 74.9
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.7e-196 689.5 440 75.2
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 2.9e-196 688.7 432 75.5
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 3.8e-196 688.3 443 74.5
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 4.9e-196 688.0 422 76.8
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.4e-195 686.4 441 74.1
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 1.9e-195 686.0 441 74.8
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.9e-195 686.0 422 76.5
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.9e-195 686.0 440 75.0
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 4.2e-195 684.9 436 74.8
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 4.2e-195 684.9 442 74.0
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 7.1e-195 684.1 434 74.7
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 9.3e-195 683.7 438 75.1
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 2.1e-194 682.6 438 73.5
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 2.1e-194 682.6 440 73.6
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.1e-194 682.6 440 74.3
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 2.1e-194 682.6 431 77.0
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 4.6e-194 681.4 439 74.9
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 4.6e-194 681.4 438 74.7
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 5.1e-193 677.9 432 74.1
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 6.7e-193 677.6 458 70.7
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 8.7e-193 677.2 428 75.2
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 1.1e-192 676.8 439 74.5
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.9e-192 676.0 432 74.3
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-191 672.9 450 72.0
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 3.7e-191 671.8 430 72.8
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.1e-190 670.2 439 72.9
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.8e-190 669.5 427 74.5
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 3.1e-190 668.7 446 72.2
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 4.0e-190 668.3 438 73.5
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 6.9e-190 667.5 454 73.3
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 2.6e-189 665.6 430 73.0
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.3e-188 663.3 440 73.0
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 2.5e-187 659.1 439 71.8
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 4.2e-187 658.3 417 74.8
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 3.5e-186 655.2 418 73.9
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.8e-185 652.9 432 72.0
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 1.1e-184 650.2 473 69.6
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.5e-184 649.8 461 69.2
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.9e-184 649.4 396 77.3
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 7.4e-184 647.5 424 73.6
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.0e-181 639.4 450 69.8
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.2e-178 630.2 432 68.1
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 6.0e-178 627.9 432 68.1
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 9.4e-171 604.0 408 69.9
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 2.7e-170 602.4 440 65.5
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.4e-169 600.1 438 65.3
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.8e-169 599.7 499 61.9
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 4.1e-166 588.6 419 69.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 5.5e-163 578.2 361 76.5
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 7.2e-163 577.8 483 59.6
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 1.2e-162 577.0 395 70.4
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.0e-161 573.9 447 63.1
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.4e-158 563.5 375 70.7
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 1.4e-158 563.5 472 61.4
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 3.2e-155 552.4 540 55.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 5.5e-155 551.6 356 75.6
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 9.7e-152 540.8 440 61.4
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 9.7e-152 540.8 440 58.2
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 2.0e-149 533.1 423 61.9
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.6e-149 532.7 466 57.9
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 1.7e-148 530.0 438 58.2
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.7e-146 522.7 438 58.9
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.4e-145 520.4 430 57.2
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.2e-140 503.1 430 55.6
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.9e-139 500.0 413 59.1
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 1.6e-130 470.3 435 52.9
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 3.3e-123 446.0 410 53.2
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.2e-119 433.3 270 75.6
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.5e-107 393.3 244 74.6
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 2.1e-98 363.6 242 74.0
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 6.8e-97 358.6 387 46.0
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 7.1e-94 348.6 196 82.7
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 2.1e-93 347.1 196 80.6
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 7.8e-93 345.1 277 62.5
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 1.0e-92 344.7 444 42.1
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 1.7e-92 344.0 243 70.0
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 8.1e-90 335.1 510 37.5
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 5.0e-63 246.1 165 71.5
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 3.1e-57 226.9 218 56.4
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 2.9e-55 220.3 184 63.0
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.3e-51 206.5 196 52.6
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 3.7e-50 203.4 425 32.5
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.0e-44 185.3 140 65.0
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.4e-44 184.9 246 43.9
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 1.1e-43 181.8 187 51.3
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 8.2e-42 175.6 152 57.9
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 1.4e-41 174.9 113 68.1
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 5.3e-41 172.9 95 77.9
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 5.2e-36 156.4 132 55.3
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 3.1e-33 147.1 140 55.0
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 3.1e-33 147.1 96 69.8
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 3.5e-32 143.7 86 73.3
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 8.5e-31 139.0 125 56.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 1.5e-30 138.3 129 56.6
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 1.1e-25 122.1 126 52.4
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.9e-22 111.3 121 49.6
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 5.2e-20 103.2 96 52.1
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 2.2e-18 97.8 66 68.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 3.8e-15 87.0 64 70.3
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 2.3e-12 77.8 65 63.1
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.0e-12 77.0 67 55.2
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 1.7e-10 71.6 82 48.8
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.9e-10 70.9 43 74.4
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 3.5e-08 63.9 55 54.5
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 3.5e-08 63.9 55 54.5
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 5.9e-08 63.2 51 60.8
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 7.8e-08 62.8 53 54.7
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.5e-06 58.5 35 71.4


User provided reference genes

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