Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 3.0e-51 204.9 105 100.0
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 6.5e-38 160.6 108 78.7
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 1.5e-34 149.4 99 75.8
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 4.1e-24 114.8 107 57.9
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 5.3e-24 114.4 108 58.3
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 5.3e-24 114.4 107 57.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 5.3e-24 114.4 107 57.0
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.0e-23 112.5 108 56.5
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 7.7e-23 110.5 107 57.0
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.0e-22 110.2 108 56.5
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.7e-22 109.4 107 55.1
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.2e-22 109.0 101 52.5
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 2.2e-22 109.0 108 52.8
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 3.8e-22 108.2 103 53.4
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 5.0e-22 107.8 102 52.9
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 8.5e-22 107.1 107 52.3
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.9e-21 105.9 100 54.0
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 2.5e-21 105.5 102 54.9
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 2.5e-21 105.5 103 52.4
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 5.5e-21 104.4 98 52.0
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 7.2e-21 104.0 102 51.0
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 7.2e-21 104.0 107 50.5
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.2e-20 103.2 101 53.5
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.2e-20 103.2 107 50.5
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.6e-20 102.8 100 53.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 4.7e-20 101.3 100 54.0
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 6.1e-20 100.9 100 51.0
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 6.1e-20 100.9 98 51.0
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 8.0e-20 100.5 100 51.0
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.0e-19 100.1 93 58.1
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.0e-19 100.1 101 52.5
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.8e-19 99.4 100 50.0
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.0e-19 98.6 100 52.0
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 4.0e-19 98.2 107 48.6
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.0e-19 98.2 108 50.9
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 5.2e-19 97.8 108 50.9
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 6.8e-19 97.4 107 50.5
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 6.8e-19 97.4 104 52.9
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.8e-19 97.1 101 50.5
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.2e-18 96.7 107 47.7
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.2e-18 96.7 101 50.5
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.2e-18 96.7 101 49.5
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 1.5e-18 96.3 102 49.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.5e-18 96.3 97 51.5
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.5e-18 96.3 108 50.0
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 2.0e-18 95.9 106 48.1
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 2.0e-18 95.9 101 43.6
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.4e-18 95.1 101 50.5
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 4.4e-18 94.7 108 46.3
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.4e-18 94.7 101 50.5
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.3e-17 93.2 103 47.6
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.2e-17 92.4 101 48.5
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.7e-17 91.7 101 47.5
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 4.8e-17 91.3 101 47.5
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 8.3e-17 90.5 107 44.9
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 1.1e-16 90.1 96 46.9
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.1e-16 90.1 100 46.0
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.4e-16 89.7 101 47.5
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.4e-16 89.0 107 43.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 4.1e-16 88.2 99 48.5
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.4e-16 87.8 97 47.4
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.4e-16 87.8 97 47.4
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.4e-16 87.8 97 47.4
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 7.0e-16 87.4 101 46.5
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 7.0e-16 87.4 113 43.4
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-15 86.7 97 47.4
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.7e-15 85.5 99 46.5
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.7e-15 85.5 100 45.0
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 3.5e-15 85.1 89 47.2
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.9e-15 84.3 100 46.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 7.7e-15 84.0 107 44.9
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 2.2e-14 82.4 104 41.3
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 5.0e-14 81.3 108 41.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 8.5e-14 80.5 101 38.6
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.1e-13 80.1 100 43.0
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.1e-13 80.1 100 44.0
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.9e-13 79.3 102 42.2
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.9e-13 79.3 100 42.0
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.2e-13 78.2 100 42.0
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.2e-13 77.4 100 42.0
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.6e-12 76.3 102 41.2
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.1e-12 75.9 102 40.2
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.7e-12 75.5 99 39.4
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 6.1e-12 74.3 105 40.0
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 8.0e-12 73.9 98 43.9
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.0e-11 73.6 102 37.3
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 2.3e-11 72.4 102 35.3
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 4.0e-11 71.6 99 38.4
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.8e-11 70.9 78 50.0
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.2e-10 70.1 105 37.1
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.2e-10 70.1 100 41.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.2e-10 70.1 103 34.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.0e-10 69.3 102 35.3
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.0e-10 69.3 103 37.9
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 2.6e-10 68.9 104 35.6
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 4.4e-10 68.2 105 34.3
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 1.7e-09 66.2 107 36.4
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 1.1e-08 63.5 90 38.9
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.4e-08 63.2 66 50.0
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 4.1e-08 61.6 99 36.4
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 4.1e-08 61.6 100 33.0
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 9.2e-08 60.5 106 34.0
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 9.2e-08 60.5 60 50.0
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 9.2e-08 60.5 101 35.6
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 1.2e-07 60.1 106 33.0
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 4.5e-07 58.2 106 33.0
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.3e-06 55.8 97 33.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 3.8e-06 55.1 106 32.1
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 3.8e-06 55.1 106 32.1
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 6.6e-06 54.3 106 32.1
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 6.6e-06 54.3 52 44.2


User provided reference genes

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