Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 5.0e-160 567.8 297 100.0
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 3.0e-112 409.1 275 77.5
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 7.1e-106 387.9 302 66.9
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 2.7e-105 386.0 293 66.6
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 6.0e-105 384.8 310 66.1
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 3.0e-104 382.5 262 71.0
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.5e-103 380.2 302 67.2
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.5e-103 380.2 299 67.2
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 7.3e-103 377.9 299 67.2
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.2e-102 377.1 225 80.9
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 1.6e-102 376.7 312 63.8
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.6e-102 376.7 281 67.3
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 1.6e-102 376.7 300 65.7
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 2.8e-102 375.9 229 77.3
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 2.8e-102 375.9 301 64.8
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 6.2e-102 374.8 286 66.4
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 6.2e-102 374.8 229 76.9
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 1.4e-101 373.6 284 65.8
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 1.4e-101 373.6 233 78.5
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 1.8e-101 373.2 293 64.8
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 1.8e-101 373.2 303 64.4
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 2.4e-101 372.9 304 63.8
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 4.0e-101 372.1 226 76.5
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 5.3e-101 371.7 293 65.5
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 5.3e-101 371.7 308 64.9
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 5.3e-101 371.7 224 76.8
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 6.9e-101 371.3 308 64.6
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 2.0e-100 369.8 304 63.8
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 3.4e-100 369.0 307 62.2
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 4.4e-100 368.6 297 62.6
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.4e-100 368.6 282 66.3
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 4.4e-100 368.6 226 77.4
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 4.4e-100 368.6 288 65.6
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 4.4e-100 368.6 227 75.3
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 4.4e-100 368.6 221 77.8
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 7.6e-100 367.9 241 72.2
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 7.6e-100 367.9 309 61.5
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 1.3e-99 367.1 225 76.0
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.7e-99 366.7 292 65.4
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 2.9e-99 365.9 229 76.0
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 6.4e-99 364.8 289 65.1
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 6.4e-99 364.8 295 65.4
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.4e-98 363.6 341 57.2
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.4e-98 363.6 227 74.9
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 1.9e-98 363.2 225 74.7
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 3.2e-98 362.5 293 64.5
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 4.2e-98 362.1 231 74.0
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 4.2e-98 362.1 227 75.3
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 5.4e-98 361.7 231 74.5
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 2.1e-97 359.8 307 63.5
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 2.7e-97 359.4 292 62.3
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 4.6e-97 358.6 279 64.9
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 7.8e-97 357.8 228 73.7
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 1.0e-96 357.5 222 73.4
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.0e-96 357.5 358 55.9
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 1.3e-96 357.1 309 65.0
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.3e-96 357.1 298 65.4
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.3e-96 356.3 220 74.1
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.0e-96 355.9 297 62.3
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 1.5e-95 353.6 279 63.8
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 2.5e-95 352.8 350 56.6
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 3.3e-95 352.4 224 72.3
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 3.3e-95 352.4 223 73.1
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 7.3e-95 351.3 305 60.3
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 9.6e-95 350.9 201 81.1
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 1.6e-94 350.1 211 77.3
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 8.1e-94 347.8 231 70.1
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 8.1e-94 347.8 279 62.4
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 1.1e-93 347.4 261 65.1
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 1.8e-93 346.7 210 76.7
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 2.0e-92 343.2 228 70.6
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 4.2e-90 335.5 302 59.9
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 5.4e-90 335.1 221 71.5
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 1.6e-89 333.6 307 58.0
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 1.3e-86 323.9 301 58.1
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 1.3e-86 323.9 223 72.2
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.6e-86 323.6 299 58.2
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.6e-86 323.6 299 58.2
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 4.8e-86 322.0 270 61.5
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.1e-85 320.9 265 62.6
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 1.4e-85 320.5 299 57.2
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.8e-85 320.1 302 56.3
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 1.8e-85 320.1 299 57.5
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 3.1e-85 319.3 303 55.8
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 5.3e-85 318.5 311 55.3
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 6.9e-85 318.2 232 66.4
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 6.9e-85 318.2 300 57.7
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 1.2e-84 317.4 232 65.9
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 1.5e-84 317.0 299 57.5
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 1.1e-82 310.8 299 57.5
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.9e-82 310.1 299 55.5
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 1.2e-81 307.4 292 57.2
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.6e-81 307.0 300 56.7
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 4.6e-81 305.4 313 57.2
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 3.0e-80 302.8 183 73.8
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 1.1e-79 300.8 323 52.6
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 7.4e-79 298.1 227 62.1
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 9.6e-79 297.7 205 69.8
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 5.3e-77 292.0 241 58.9
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 1.2e-76 290.8 283 56.2
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 9.3e-74 281.2 246 61.0
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 1.2e-73 280.8 143 93.0
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 2.7e-73 279.6 297 49.8
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.5e-71 273.9 151 82.8
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 2.5e-71 273.1 179 69.8
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 2.8e-70 269.6 224 55.8
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.5e-68 263.8 151 76.8
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.9e-66 256.9 219 57.1
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 4.1e-61 239.2 215 59.5
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 3.2e-58 229.6 196 62.2
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.5e-55 220.7 222 59.9
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.3e-54 217.6 143 72.7
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 7.0e-53 211.8 146 68.5
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 7.0e-53 211.8 140 68.6
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 6.3e-46 188.7 141 66.7
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.0e-39 167.2 146 57.5
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 4.5e-36 156.0 182 38.5
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 3.6e-33 146.4 198 37.9
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 1.8e-32 144.1 152 55.3
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 2.7e-20 103.6 65 73.8
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 6.1e-17 92.4 137 41.6
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 1.5e-10 71.2 35 88.6
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 8.0e-09 65.5 101 42.6
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 2.3e-08 63.9 100 34.0
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 1.2e-07 61.6 138 34.8
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 2.0e-07 60.8 127 28.3
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 3.4e-07 60.1 106 31.1
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 5.8e-07 59.3 105 31.4
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 5.8e-07 59.3 123 30.1
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 5.8e-07 59.3 106 32.1
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 5.8e-07 59.3 105 32.4
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 7.5e-07 58.9 107 32.7
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 9.8e-07 58.5 102 32.4
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 1.7e-06 57.8 100 31.0
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 1.7e-06 57.8 100 31.0
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 2.2e-06 57.4 100 32.0
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 2.9e-06 57.0 100 32.0
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 2.9e-06 57.0 124 27.4
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 3.7e-06 56.6 123 28.5
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 3.7e-06 56.6 132 30.3
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 4.9e-06 56.2 102 32.4
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 4.9e-06 56.2 107 30.8
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 4.9e-06 56.2 129 31.8
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 4.9e-06 56.2 106 30.2
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 6.4e-06 55.8 97 32.0
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 6.4e-06 55.8 101 32.7
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 6.4e-06 55.8 107 31.8
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 8.3e-06 55.5 100 30.0
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 8.3e-06 55.5 107 30.8
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 8.3e-06 55.5 100 31.0


User provided reference genes

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