Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 0.0e+00 2086.6 1097 100.0
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 0.0e+00 1148.7 1118 60.3
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 4.3e-193 679.5 1155 43.9
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 1.4e-178 631.3 941 44.8
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 2.5e-164 583.9 1084 41.5
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.6e-150 538.1 1328 34.9
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.5e-145 521.5 1316 35.2
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 2.0e-145 521.2 1129 37.5
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 2.2e-144 517.7 1128 37.4
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 5.4e-127 459.9 1301 32.9
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 4.7e-123 446.8 1377 32.4
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 6.4e-120 436.4 1456 31.2
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 4.6e-118 430.3 1307 32.6
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 7.8e-118 429.5 1375 31.6
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 2.9e-112 411.0 1330 30.6
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 1.9e-111 408.3 1049 33.7
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 9.3e-111 406.0 1435 30.2
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.3e-109 402.1 1371 30.7
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 5.1e-109 400.2 1303 32.1
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 2.1e-107 394.8 1268 30.9
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 1.5e-105 388.7 1408 30.8
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 4.9e-104 383.6 1422 29.4
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 2.4e-103 381.3 1325 30.9
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 2.4e-103 381.3 1362 30.3
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 2.7e-102 377.9 1360 30.2
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 1.0e-101 375.9 1360 30.1
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.3e-101 375.6 1351 30.2
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 2.3e-101 374.8 1249 31.1
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 5.6e-100 370.2 1180 31.3
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.1e-98 365.9 1387 29.9
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 2.0e-97 361.7 1420 28.9
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 5.8e-97 360.1 1316 30.3
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.9e-96 357.8 1329 29.2
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 4.9e-96 357.1 1440 29.6
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 6.5e-96 356.7 1326 29.6
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 6.5e-96 356.7 1332 29.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.1e-95 355.9 1379 29.4
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 9.3e-95 352.8 1336 29.9
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 2.1e-94 351.7 1321 30.7
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 2.1e-94 351.7 1307 28.1
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.8e-93 348.6 1357 28.5
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 5.7e-92 343.6 1399 29.2
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 1.4e-90 339.0 1389 28.9
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 3.1e-90 337.8 1329 28.6
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 9.0e-90 336.3 1320 29.1
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 3.4e-89 334.3 1312 28.5
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 4.5e-89 334.0 1319 29.0
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 1.7e-88 332.0 1371 27.1
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 3.8e-88 330.9 571 40.1
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 3.8e-88 330.9 1162 29.2
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 1.4e-87 328.9 1353 28.4
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.2e-87 327.8 1199 30.7
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 3.2e-87 327.8 1199 30.7
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.1e-86 323.6 1232 27.9
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 1.0e-85 322.8 1290 29.2
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 1.3e-83 315.8 1378 28.3
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.3e-83 315.8 1146 29.7
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 2.8e-83 314.7 1164 28.9
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 4.8e-83 313.9 1288 28.6
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 1.1e-82 312.8 1155 28.6
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 1.1e-82 312.8 1155 28.6
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 5.3e-82 310.5 1215 28.6
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 5.3e-82 310.5 1148 28.3
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.3e-82 310.5 1338 27.7
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 7.7e-81 306.6 1148 28.2
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 1.7e-80 305.4 1153 28.4
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 1.7e-80 305.4 1162 28.2
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 3.9e-77 294.3 1258 28.8
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 2.0e-76 292.0 1323 27.8
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 7.4e-76 290.0 1325 27.2
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 1.4e-74 285.8 1256 27.0
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 4.1e-74 284.3 1200 29.4
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 5.3e-74 283.9 1252 26.9
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 4.5e-73 280.8 1320 28.3
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 3.8e-72 277.7 1392 26.4
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.4e-71 275.8 341 47.5
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.6e-70 271.2 1174 28.1
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 3.6e-70 271.2 1194 28.4
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.4e-69 269.2 1263 26.9
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 5.3e-66 257.3 1155 28.2
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 7.0e-66 256.9 513 34.3
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.6e-65 255.8 412 38.8
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.9e-64 251.5 1367 27.4
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 4.7e-62 244.2 400 36.5
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.3e-61 241.9 1359 27.0
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.0e-61 241.5 704 31.7
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 6.7e-61 240.4 1503 25.4
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.7e-59 235.7 1255 25.7
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 1.1e-58 233.0 1369 25.6
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.4e-58 231.9 1114 27.4
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.2e-57 229.6 1143 27.7
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 5.9e-57 227.3 1236 28.2
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 3.8e-56 224.6 1309 25.6
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.8e-53 215.7 1324 25.6
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.8e-53 215.7 1213 27.0
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 8.8e-53 213.4 1105 25.0
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.7e-51 209.1 281 44.8
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 2.8e-51 208.4 453 34.7
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 2.0e-49 202.2 1382 24.0
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 3.5e-49 201.4 391 35.5
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 3.5e-49 201.4 446 31.4
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 3.5e-49 201.4 1148 22.9
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 4.5e-49 201.1 496 30.6
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 2.2e-48 198.7 350 42.9
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.9e-47 195.7 471 29.7
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 6.8e-45 187.2 267 39.0
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 1.7e-43 182.6 1123 24.8
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 1.6e-38 166.0 315 33.0
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.4e-37 162.9 479 29.9
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.8e-34 152.5 372 31.7
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.6e-33 149.4 338 37.0
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 3.6e-30 138.3 152 46.7
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 1.8e-29 136.0 235 40.9
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.2e-28 133.3 280 39.3
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 4.1e-26 124.8 280 41.1
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 3.9e-24 118.2 138 42.8
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 2.8e-22 112.1 223 40.8
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 8.3e-19 100.5 122 43.4
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 1.4e-18 99.8 243 38.3
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.4e-18 99.8 314 32.5
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 5.4e-18 97.8 131 42.0
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 4.6e-17 94.7 145 33.1
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.2e-09 70.1 76 46.1
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 3.5e-09 68.6 120 35.8
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 7.8e-09 67.4 149 28.2
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 1.3e-08 66.6 87 40.2
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.1e-08 64.7 203 33.0
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.5e-07 62.4 64 56.2
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 1.2e-06 60.1 343 26.5
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 1.6e-06 59.7 92 40.2
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 3.6e-06 58.5 143 32.9


User provided reference genes

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