Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.0e-179 633.3 316 100.0
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 2.2e-145 519.2 313 80.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 2.3e-126 456.1 285 79.6
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 4.5e-119 431.8 312 70.5
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.7e-118 429.9 311 68.5
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 8.6e-118 427.6 310 68.1
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 9.5e-117 424.1 310 67.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 3.6e-116 422.2 311 68.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 6.1e-116 421.4 308 67.5
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 2.3e-115 419.5 311 65.9
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 6.8e-115 417.9 314 65.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.5e-114 416.8 311 64.6
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.5e-114 416.8 307 65.5
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.6e-114 416.0 307 65.5
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 4.4e-114 415.2 311 64.3
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 5.8e-114 414.8 315 65.1
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.3e-113 413.7 311 65.6
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.1e-112 410.6 308 65.9
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.1e-112 410.6 310 64.5
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.9e-112 409.8 308 65.6
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 3.2e-112 409.1 314 64.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.4e-112 408.3 310 64.2
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.6e-111 406.8 311 63.7
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.6e-111 406.8 319 64.9
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.0e-111 406.4 317 63.7
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.7e-111 406.0 314 65.3
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.0e-110 404.1 314 65.0
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 2.3e-110 402.9 333 62.2
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 5.0e-110 401.7 314 64.3
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 6.6e-110 401.4 311 63.0
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.1e-109 400.6 303 66.3
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.5e-109 400.2 315 63.8
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.9e-109 399.8 314 64.3
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 3.3e-109 399.1 313 62.6
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.3e-109 398.7 315 64.1
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.6e-108 396.7 314 62.4
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.7e-108 395.2 313 61.3
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 4.7e-108 395.2 310 63.2
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.8e-107 393.3 307 62.2
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 5.2e-107 391.7 313 62.9
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 6.8e-107 391.3 311 62.1
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 8.9e-107 391.0 311 61.4
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.5e-106 390.2 311 61.1
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 2.0e-106 389.8 314 62.7
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 3.4e-106 389.0 311 63.0
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 5.8e-106 388.3 311 62.4
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.7e-105 386.7 310 62.6
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.2e-105 386.3 281 66.9
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 3.7e-105 385.6 310 60.3
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.9e-105 385.2 361 53.5
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.4e-105 384.8 325 60.3
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 8.3e-105 384.4 314 61.5
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 4.1e-104 382.1 316 60.8
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 2.1e-103 379.8 302 64.2
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.7e-103 379.4 280 67.5
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 3.5e-103 379.0 324 58.3
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.7e-102 376.7 313 61.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 3.0e-102 375.9 308 59.4
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 3.9e-102 375.6 281 65.1
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 2.5e-101 372.9 313 60.4
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 3.3e-101 372.5 281 64.4
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 7.3e-101 371.3 314 61.1
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 2.1e-100 369.8 311 60.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.1e-100 369.8 267 67.0
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.6e-100 369.0 311 59.2
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.4e-99 367.1 281 63.7
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 4.0e-99 365.5 292 62.3
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 4.0e-99 365.5 311 60.8
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 4.0e-99 365.5 311 60.8
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 6.8e-99 364.8 314 60.5
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.5e-98 363.6 310 59.4
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.6e-98 362.8 313 60.4
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 3.4e-98 362.5 310 59.7
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.4e-98 362.1 310 59.7
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 4.4e-98 362.1 311 60.5
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 5.8e-98 361.7 311 60.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 2.9e-97 359.4 312 58.7
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 6.0e-95 351.7 327 54.4
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 6.0e-95 351.7 325 56.3
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.3e-94 350.5 283 61.8
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 5.1e-94 348.6 276 64.5
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.5e-93 347.1 327 54.1
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.9e-93 346.7 312 57.7
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.5e-93 346.3 313 55.9
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.5e-93 346.3 276 62.0
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 4.3e-93 345.5 275 60.4
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 9.6e-93 344.4 279 62.4
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.7e-92 342.0 240 70.8
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 8.9e-91 337.8 307 55.4
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.0e-90 336.7 247 65.6
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.6e-90 336.3 307 55.0
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 5.8e-90 335.1 307 55.4
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 5.8e-90 335.1 307 54.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 7.6e-90 334.7 307 54.7
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 7.6e-90 334.7 307 54.7
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 7.6e-90 334.7 307 54.7
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 7.6e-90 334.7 307 54.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.3e-89 334.0 307 54.7
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 6.4e-89 331.6 307 54.4
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 6.4e-89 331.6 307 55.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 8.4e-89 331.3 307 54.4
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 2.4e-88 329.7 307 54.1
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 3.2e-88 329.3 307 53.7
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.6e-87 327.0 307 54.1
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 7.8e-87 324.7 240 67.1
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.7e-86 323.6 307 53.7
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.3e-86 323.2 252 63.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 3.0e-86 322.8 233 70.0
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.7e-86 321.2 317 53.0
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 4.3e-85 318.9 285 56.1
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.6e-84 317.0 311 54.3
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.1e-83 314.3 309 51.5
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.5e-82 310.5 310 53.9
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 9.9e-82 307.8 268 57.8
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.8e-81 305.8 280 58.2
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.1e-75 287.7 253 58.9
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 4.0e-75 285.8 222 65.8
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.7e-73 280.4 276 51.8
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.4e-72 277.3 316 48.7
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 2.3e-70 270.0 274 50.4
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 6.5e-65 251.9 284 44.4
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.1e-64 251.1 202 58.9
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.9e-48 197.2 190 52.1
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.8e-44 183.3 169 52.7
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.8e-43 180.6 193 54.9
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.5e-40 170.2 137 58.4
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 5.5e-40 169.1 283 37.5
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.3e-35 152.5 109 61.5
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 4.0e-30 136.3 113 62.8
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 6.1e-23 112.5 109 50.5
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 2.4e-11 73.9 268 28.4
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 7.2e-08 62.4 138 33.3


User provided reference genes

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