Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.3e-177 626.3 323 100.0
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.2e-77 294.3 341 56.6
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 9.6e-48 194.9 276 46.4
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 1.4e-46 191.0 248 45.2
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 9.0e-46 188.3 331 40.5
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.0e-45 187.2 242 45.5
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 6.0e-42 175.6 330 39.4
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 3.9e-41 172.9 335 39.4
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 5.1e-41 172.6 344 40.4
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 5.1e-41 172.6 299 40.8
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.9e-40 170.6 256 43.0
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.6e-39 167.5 310 40.0
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 2.8e-39 166.8 332 39.2
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 3.1e-38 163.3 315 40.6
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 3.1e-38 163.3 245 46.9
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 2.6e-37 160.2 296 37.5
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 1.7e-36 157.5 297 35.0
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 3.2e-35 153.3 292 39.7
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 4.2e-35 152.9 291 41.2
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 2.1e-34 150.6 237 46.0
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 2.1e-34 150.6 322 33.9
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.5e-34 149.8 245 40.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 4.6e-34 149.4 272 35.3
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 6.0e-34 149.1 255 44.7
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 6.0e-34 149.1 255 44.7
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 7.9e-34 148.7 330 34.8
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 1.0e-33 148.3 335 34.6
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.0e-33 148.3 329 34.7
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.0e-33 148.3 328 34.5
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.8e-33 147.5 324 37.7
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 2.3e-33 147.1 301 40.5
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 6.7e-33 145.6 288 34.0
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 6.7e-33 145.6 311 40.2
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.9e-32 144.1 322 36.0
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 3.3e-32 143.3 341 33.4
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 4.3e-32 142.9 292 40.1
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 4.3e-32 142.9 322 37.0
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 9.6e-32 141.7 329 36.8
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 1.6e-31 141.0 357 36.1
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 2.1e-31 140.6 293 35.5
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 2.1e-31 140.6 269 38.7
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.8e-31 140.2 264 41.7
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 6.2e-31 139.0 319 37.6
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.8e-30 137.5 289 40.1
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 2.4e-30 137.1 327 37.6
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 3.1e-30 136.7 288 36.5
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 4.0e-30 136.3 329 34.0
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 5.3e-30 136.0 314 34.1
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.2e-29 134.8 303 35.0
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.5e-29 134.4 257 37.4
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 2.6e-29 133.7 343 35.3
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 3.4e-29 133.3 307 33.2
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 7.6e-29 132.1 327 34.3
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 1.7e-28 131.0 296 34.5
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 2.2e-28 130.6 279 34.4
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.2e-28 130.6 350 33.7
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 2.2e-28 130.6 329 35.0
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 3.8e-28 129.8 328 36.3
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 4.9e-28 129.4 200 39.0
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 4.9e-28 129.4 281 35.2
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 6.4e-28 129.0 284 31.7
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 8.4e-28 128.6 343 32.7
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 8.4e-28 128.6 387 31.5
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 2.4e-27 127.1 370 32.4
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 4.2e-27 126.3 357 31.7
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 7.1e-27 125.6 280 38.6
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 9.3e-27 125.2 364 30.2
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 9.3e-27 125.2 280 38.2
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.6e-26 124.4 227 41.4
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.5e-26 123.2 329 37.1
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.3e-25 121.3 268 36.6
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 5.1e-25 119.4 327 33.6
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 1.1e-24 118.2 266 37.2
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 1.5e-24 117.9 281 33.8
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.5e-24 117.9 250 34.0
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 1.9e-24 117.5 301 32.2
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 2.5e-24 117.1 303 32.3
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 5.6e-24 115.9 270 38.1
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 9.6e-24 115.2 227 37.0
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 9.6e-24 115.2 313 34.2
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 1.6e-23 114.4 271 33.6
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 4.8e-23 112.8 210 42.4
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 6.2e-23 112.5 267 34.5
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 8.2e-23 112.1 235 36.2
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 8.2e-23 112.1 212 43.4
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 1.4e-22 111.3 210 41.9
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 9.0e-22 108.6 224 34.4
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 1.5e-21 107.8 330 29.4
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 1.5e-21 107.8 185 39.5
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.5e-21 107.8 150 41.3
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 2.0e-21 107.5 341 31.4
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.6e-21 107.1 194 41.2
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 2.6e-21 107.1 363 31.1
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 3.4e-21 106.7 217 39.2
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 3.4e-21 106.7 226 36.3
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 4.5e-21 106.3 196 36.2
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 5.8e-21 105.9 166 37.3
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 1.0e-20 105.1 272 30.5
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.0e-20 105.1 212 36.8
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.7e-20 104.4 319 34.5
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.9e-20 103.6 262 35.5
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 4.9e-20 102.8 217 40.1
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 3.2e-19 100.1 219 35.2
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 7.1e-19 99.0 227 38.8
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.6e-18 97.8 242 32.6
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 3.5e-18 96.7 223 33.6
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 7.9e-18 95.5 81 50.6
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.8e-17 94.4 188 37.8
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.8e-17 94.4 165 45.5
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.5e-16 90.5 259 30.9
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.5e-16 90.5 349 26.6
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 3.3e-16 90.1 248 33.5
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.7e-15 86.7 183 33.9
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.8e-14 84.3 99 45.5
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 4.1e-14 83.2 129 46.5
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 5.3e-14 82.8 135 36.3
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.0e-13 80.9 76 50.0
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 5.0e-12 76.3 63 55.6
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 1.4e-11 74.7 138 29.0
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.9e-11 74.3 121 33.9
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.2e-11 73.6 69 46.4
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 6.1e-10 69.3 121 34.7
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 1.9e-08 64.3 97 26.8
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.2e-07 60.8 294 24.5
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 1.1e-06 58.5 253 23.7
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 1.1e-06 58.5 127 38.6
Lj5g0003431 Lotus japonicus HOM05D002310 ORTHO05D002326 9.1e-06 55.5 87 33.3


User provided reference genes

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