Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 4.7e-109 397.9 204 100.0
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 3.2e-105 385.2 203 94.6
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 3.3e-78 295.4 209 77.0
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.4e-76 290.0 210 72.9
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.8e-66 255.4 214 62.6
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.2e-65 252.3 210 64.8
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.6e-64 248.4 223 59.2
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 8.7e-63 244.2 215 60.9
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.1e-62 243.8 215 61.4
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 2.5e-62 242.7 213 61.0
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 7.4e-62 241.1 213 60.1
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 9.6e-62 240.7 224 59.4
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.6e-61 240.0 231 58.9
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 2.8e-61 239.2 211 61.1
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 4.8e-61 238.4 220 60.9
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 4.8e-61 238.4 213 61.0
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.1e-60 237.3 213 59.2
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.1e-60 237.3 226 58.0
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.4e-60 236.1 222 59.0
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 3.1e-60 235.7 221 56.1
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 3.1e-60 235.7 215 58.6
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 5.3e-60 235.0 219 56.6
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.3e-60 235.0 217 58.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 5.3e-60 235.0 216 57.4
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 6.9e-60 234.6 221 58.8
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.0e-60 234.2 220 60.9
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.2e-59 233.8 217 59.4
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.5e-59 233.4 228 57.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-59 232.6 222 59.0
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-59 232.6 222 59.0
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 2.6e-59 232.6 211 58.8
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 2.6e-59 232.6 222 58.1
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.6e-59 232.6 222 58.1
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.6e-59 232.6 221 59.3
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.4e-59 232.3 230 58.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 3.4e-59 232.3 223 56.5
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-59 232.3 222 58.1
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 3.4e-59 232.3 221 57.0
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.3e-58 230.3 222 57.2
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.3e-58 230.3 222 57.2
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 1.7e-58 229.9 230 56.1
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.9e-58 229.2 229 57.2
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.8e-58 228.8 222 56.3
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 4.9e-58 228.4 219 55.7
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 8.4e-58 227.6 218 56.4
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.4e-57 226.9 219 56.2
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.9e-57 226.5 222 55.4
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 2.4e-57 226.1 224 58.5
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 2.4e-57 226.1 220 56.4
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 3.2e-57 225.7 219 55.3
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.5e-57 224.9 213 57.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 5.5e-57 224.9 219 54.8
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 7.1e-57 224.6 215 56.7
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 7.1e-57 224.6 207 59.9
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 9.3e-57 224.2 219 54.8
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.3e-57 224.2 224 54.5
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.6e-56 223.4 201 59.7
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.6e-56 223.4 230 55.7
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.6e-56 223.4 219 54.3
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.6e-56 223.4 220 57.7
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 3.5e-56 222.2 216 56.5
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.6e-56 221.9 224 54.0
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 7.9e-56 221.1 225 53.3
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.0e-55 220.7 219 53.9
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.0e-55 220.7 224 53.1
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.3e-55 220.3 226 54.0
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.3e-55 220.3 228 57.5
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.3e-55 220.3 221 56.6
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.8e-55 219.9 209 56.0
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.3e-55 219.5 217 54.8
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 2.3e-55 219.5 217 57.1
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 2.3e-55 219.5 247 51.4
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.3e-55 219.5 217 53.9
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 6.7e-55 218.0 207 55.1
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.7e-55 217.6 234 51.7
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 1.5e-54 216.9 212 55.7
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.9e-54 216.5 222 52.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.9e-54 216.5 216 54.2
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 2.5e-54 216.1 217 54.8
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 7.4e-54 214.5 227 50.7
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.4e-54 214.5 224 52.2
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 7.4e-54 214.5 229 52.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 7.4e-54 214.5 220 53.6
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.7e-53 212.2 216 53.7
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-52 210.3 246 49.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.4e-52 210.3 201 56.7
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.4e-52 210.3 218 52.3
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.4e-52 210.3 218 54.6
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.8e-52 209.9 206 54.4
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 9.0e-52 207.6 200 56.5
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 9.0e-52 207.6 216 52.8
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 1.5e-51 206.8 200 56.5
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.4e-51 205.7 200 56.0
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 3.4e-51 205.7 209 54.5
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.3e-50 203.8 205 56.1
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.9e-50 201.8 209 53.1
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.9e-49 199.9 214 52.8
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 4.2e-49 198.7 210 53.8
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 4.2e-49 198.7 205 54.1
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.2e-48 197.2 280 46.1
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 6.0e-48 194.9 208 51.4
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.0e-47 194.1 218 51.4
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 3.0e-47 192.6 234 47.0
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 3.9e-47 192.2 232 48.7
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 6.7e-47 191.4 223 51.6
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.8e-44 183.3 209 52.6
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.2e-41 172.6 159 56.6
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.6e-40 170.2 218 48.2
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 6.1e-40 168.3 198 49.0
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.5e-38 163.7 223 46.6
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.7e-38 161.8 284 40.1
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.1e-36 156.0 184 50.5
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 3.2e-33 146.0 249 36.9
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.2e-33 144.8 95 70.5
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.0e-30 136.7 248 38.7
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.3e-29 134.0 274 34.3
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.4e-28 129.8 204 41.2
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.2e-27 127.5 266 35.7
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 2.9e-26 122.9 102 57.8
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.8e-26 122.5 176 47.2
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 7.2e-25 118.2 182 44.0
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 7.2e-25 118.2 184 41.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.8e-21 106.3 272 31.2
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.7e-18 97.1 184 39.1
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 2.5e-17 93.2 89 50.6
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.2e-16 90.9 65 63.1
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 4.7e-16 89.0 160 43.8
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.3e-13 80.9 52 75.0
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 8.2e-13 78.2 125 39.2
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 9.1e-12 74.7 115 40.9
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 3.5e-11 72.8 61 63.9
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.5e-11 72.8 61 63.9
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-10 71.2 35 80.0
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.9e-10 69.7 145 38.6
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 2.7e-08 63.2 107 39.3
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 2.7e-08 63.2 107 39.3
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 2.6e-06 56.6 202 24.8


User provided reference genes

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