Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 2.8e-171 605.1 292 100.0
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 1.2e-158 563.1 290 92.8
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 1.1e-148 530.0 290 85.9
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 1.5e-148 529.6 290 84.8
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 4.8e-147 524.6 287 84.3
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 6.2e-147 524.2 290 85.2
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 1.1e-146 523.5 288 88.5
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 1.4e-146 523.1 290 84.8
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.8e-146 522.7 290 84.1
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 4.0e-146 521.5 287 84.0
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 1.2e-145 520.0 290 84.8
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 1.5e-145 519.6 290 83.1
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 3.4e-145 518.5 287 83.3
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 5.8e-145 517.7 288 82.6
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 5.8e-145 517.7 290 83.4
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 7.6e-145 517.3 290 82.8
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 7.6e-145 517.3 290 83.8
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 1.7e-144 516.2 289 83.0
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 2.2e-144 515.8 290 82.8
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 2.2e-144 515.8 290 82.8
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 2.2e-144 515.8 290 83.1
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 2.9e-144 515.4 290 83.4
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 3.8e-144 515.0 290 83.4
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 6.4e-144 514.2 290 81.7
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 6.4e-144 514.2 290 82.4
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 8.4e-144 513.8 290 82.4
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 8.4e-144 513.8 290 83.4
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 8.4e-144 513.8 290 83.1
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 1.1e-143 513.5 290 81.7
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 1.4e-143 513.1 287 82.9
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 1.4e-143 513.1 287 82.9
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.4e-143 513.1 290 83.1
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.9e-143 512.7 290 83.1
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 2.4e-143 512.3 287 81.9
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 3.2e-143 511.9 290 81.7
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 4.2e-143 511.5 290 82.8
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 4.2e-143 511.5 290 82.1
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 4.2e-143 511.5 290 83.1
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 4.2e-143 511.5 290 83.1
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 5.5e-143 511.1 290 82.8
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 7.1e-143 510.8 290 82.4
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 1.2e-142 510.0 289 82.4
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.2e-142 510.0 290 82.8
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.6e-142 509.6 290 81.7
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 2.1e-142 509.2 290 82.1
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 81.7
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 81.7
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 82.4
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 82.4
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 82.4
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 82.8
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 82.8
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 2.7e-142 508.8 290 82.1
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 3.5e-142 508.4 280 84.6
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 3.5e-142 508.4 287 81.5
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 1.8e-141 506.1 290 81.7
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 3.0e-141 505.4 290 82.1
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 3.9e-141 505.0 290 81.4
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 3.9e-141 505.0 290 81.7
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 3.9e-141 505.0 321 75.4
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 6.7e-141 504.2 290 81.0
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 8.7e-141 503.8 290 81.4
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.9e-140 502.7 290 82.1
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 1.9e-140 502.7 290 80.7
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 3.3e-140 501.9 287 80.5
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 5.6e-140 501.1 290 80.7
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 5.6e-140 501.1 290 80.3
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 5.6e-140 501.1 292 81.2
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 7.4e-140 500.7 290 81.7
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 1.3e-139 500.0 290 80.0
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 1.3e-139 500.0 290 80.3
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.3e-139 500.0 290 81.7
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.6e-139 499.6 287 80.8
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 4.8e-139 498.0 290 79.7
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 4.8e-139 498.0 290 81.4
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 6.2e-139 497.7 290 79.3
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 1.4e-138 496.5 290 79.7
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 2.4e-138 495.7 290 80.7
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 6.9e-138 494.2 290 81.0
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 1.2e-137 493.4 290 79.7
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 2.6e-137 492.3 292 79.8
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 7.6e-137 490.7 292 79.5
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.3e-136 490.0 287 78.7
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 1.7e-136 489.6 289 78.2
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 2.2e-136 489.2 289 77.9
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 2.9e-136 488.8 290 78.3
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 2.9e-136 488.8 290 78.3
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 4.9e-136 488.0 291 79.0
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 6.5e-136 487.6 290 78.3
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 8.4e-136 487.3 287 79.8
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 1.4e-135 486.5 290 78.6
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 1.9e-135 486.1 290 79.0
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.6e-134 483.0 288 77.8
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.6e-134 483.0 288 77.8
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 6.0e-134 481.1 287 77.7
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 6.0e-134 481.1 287 77.4
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.0e-133 480.3 289 78.5
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 2.3e-133 479.2 271 83.0
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 8.7e-133 477.2 272 83.1
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 9.6e-132 473.8 276 80.4
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 9.6e-132 473.8 272 81.6
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 7.6e-129 464.2 289 74.7
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 1.7e-128 463.0 311 74.0
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 5.0e-128 461.5 290 77.2
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 2.5e-127 459.1 292 73.3
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 1.6e-126 456.4 272 78.7
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.7e-126 455.7 252 83.7
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 1.1e-124 450.3 290 74.8
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 2.2e-120 436.0 283 71.0
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 2.9e-120 435.6 309 66.7
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.9e-119 433.0 271 76.0
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 1.9e-119 433.0 286 68.5
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 2.5e-119 432.6 290 71.7
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 3.9e-117 425.2 282 68.8
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 2.2e-115 419.5 268 72.4
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.9e-111 406.4 271 68.3
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 6.3e-107 391.3 282 63.1
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 3.3e-100 369.0 221 77.4
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.7e-94 348.6 321 58.3
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.6e-89 333.6 182 85.2
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.7e-86 322.0 181 84.0
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 8.0e-86 321.2 184 83.2
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 3.4e-84 315.8 288 52.1
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 5.9e-81 305.1 295 52.5
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 1.0e-80 304.3 295 53.9
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 3.0e-77 292.7 171 80.7
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 2.2e-75 286.6 190 68.9
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 1.0e-69 267.7 290 45.2
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 2.2e-59 233.4 312 44.6
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 6.2e-54 215.3 164 64.0
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.1e-50 204.5 222 50.5
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.6e-49 199.1 222 49.5
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 1.8e-45 187.2 106 79.2
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.4e-42 175.6 99 82.8
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 7.1e-42 175.3 100 81.0
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.6e-39 165.6 95 81.1
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 3.4e-28 129.8 76 81.6
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.0e-21 106.3 216 33.8
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 6.9e-21 105.5 95 60.0
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 1.3e-08 64.7 48 62.5
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.5e-07 61.2 40 75.0


User provided reference genes

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