Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 2033.5 1037 100.0
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1644.0 1004 83.0
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1567.7 1001 80.0
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1495.3 1011 77.4
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1313.9 1010 67.5
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1312.0 1038 66.2
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1292.3 1000 66.9
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1290.8 1006 65.7
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1276.2 1006 65.1
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1273.1 1008 65.4
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1268.8 991 67.1
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1265.8 1008 65.3
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1263.8 1008 65.6
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1261.5 1007 64.4
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1253.0 1018 65.1
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1252.3 1007 64.3
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1251.5 1010 64.7
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1251.5 1001 64.3
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1247.3 1007 64.3
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1245.0 1008 64.4
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1240.7 1035 62.8
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1236.1 1006 63.7
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1236.1 990 65.5
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1234.6 1006 62.7
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1232.6 1006 63.1
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1232.6 1006 62.6
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1231.9 1013 64.0
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1231.5 1072 61.2
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1230.7 1010 62.4
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1228.8 1012 62.3
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1228.8 1008 62.7
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1228.0 985 64.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1224.9 1007 63.4
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1223.8 1007 64.1
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1221.8 1059 61.7
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1219.5 1017 61.7
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1216.4 995 62.3
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1208.4 1008 63.2
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1204.9 1030 62.3
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1198.3 1009 61.9
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1190.6 1007 62.2
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1181.8 1011 61.3
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1181.4 1075 59.0
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1177.5 1008 60.9
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1171.4 1007 60.9
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1168.7 1011 60.7
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1168.3 1008 60.9
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1166.8 1013 61.5
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1164.8 1005 59.7
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1163.7 1018 60.3
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1161.4 1005 59.7
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1161.4 1008 61.0
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1159.1 1004 59.9
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1158.7 1007 60.1
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1157.5 1039 58.4
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1156.0 1012 60.1
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1152.5 1005 59.7
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1152.1 1004 59.0
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1151.3 1004 59.6
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1148.3 1007 58.9
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1148.3 1004 59.1
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1148.3 1004 59.1
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1147.1 1004 58.9
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1145.6 1012 59.5
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1144.8 1007 59.2
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1144.0 1004 58.7
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1143.3 1007 58.6
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1141.7 1008 58.4
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1138.6 1012 59.3
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1137.1 1008 59.0
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1135.6 1007 59.0
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1135.2 1014 58.8
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1133.6 1007 58.1
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1133.2 1008 58.1
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1130.9 1010 59.2
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1128.6 1010 59.1
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1125.2 1013 57.9
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1094.3 1010 57.3
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 1.1e-307 1060.1 987 57.8
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 4.4e-304 1048.1 1009 55.9
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 5.6e-299 1031.2 780 67.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 6.2e-298 1027.7 1015 54.8
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 8.9e-297 1023.8 796 66.7
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 2.4e-294 1015.8 1016 53.4
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 6.6e-284 981.1 1013 52.2
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 8.6e-284 980.7 780 64.9
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 7.8e-269 931.0 698 66.2
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 9.3e-262 907.5 594 75.8
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 3.0e-260 902.5 610 73.3
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.8e-252 876.7 977 49.9
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.5e-238 829.7 987 47.3
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-230 803.9 1024 44.7
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 2.6e-227 793.1 1026 44.1
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 3.9e-220 769.2 865 47.7
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.1e-214 751.1 775 52.1
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 7.2e-214 748.4 747 53.7
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 9.7e-211 738.0 1011 43.9
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 7.0e-201 705.3 544 66.4
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.6e-200 704.1 503 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 7.8e-184 648.7 1048 38.7
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.2e-177 626.7 528 62.5
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 7.8e-176 622.1 1035 39.0
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 1.2e-173 614.8 453 69.3
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.2e-172 609.4 572 58.4
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 6.0e-168 595.9 433 69.5
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 9.2e-161 572.0 545 56.1
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.2e-160 571.6 1020 35.1
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 2.8e-157 560.5 506 59.9
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 6.9e-148 529.3 507 56.6
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.1e-137 495.4 419 61.8
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 7.1e-129 466.1 459 53.8
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.4e-119 435.3 623 42.1
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 2.0e-115 421.4 1100 29.5
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 2.0e-110 404.8 269 77.0
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 4.8e-109 400.2 238 81.5
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 2.4e-108 397.9 525 44.2
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 6.3e-101 373.2 249 75.5
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.2e-95 353.6 420 48.1
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 8.0e-88 329.7 295 57.3
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 2.1e-72 278.5 453 38.9
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.1e-68 266.2 312 49.4
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.9e-68 265.4 328 47.0
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.3e-66 258.5 311 48.2
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 8.9e-55 219.9 458 36.5
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 7.8e-51 206.8 321 41.1
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 1.1e-49 203.0 109 89.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 7.3e-49 200.3 163 63.8
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 7.3e-49 200.3 163 63.8
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-48 199.1 309 41.1
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 1.4e-44 186.0 702 26.4
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 2.1e-43 182.2 810 25.3
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 1.0e-42 179.9 148 65.5
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 7.3e-41 173.7 228 44.7
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 3.5e-35 154.8 397 32.0
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-34 153.3 393 31.3
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 2.8e-32 145.2 116 66.4
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-31 142.9 313 33.5
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 2.0e-30 139.0 161 48.4
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 6.4e-29 134.0 119 62.2
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.9e-28 132.5 260 31.2
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 2.3e-26 125.6 76 81.6
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-26 125.2 428 28.7
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 7.6e-22 110.5 76 69.7
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-18 100.1 434 24.4
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.5e-17 96.3 61 77.0
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 3.3e-17 95.1 89 52.8
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 9.0e-15 87.0 158 34.2
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 5.8e-14 84.3 154 33.8
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-12 80.1 51 70.6
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.2e-11 76.6 69 60.9
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-11 76.3 206 30.6
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 6.0e-11 74.3 45 77.8
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 3.9e-10 71.6 49 67.3
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 1.1e-07 63.5 99 46.5
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 2.4e-07 62.4 88 38.6
C06p54110 Brassica napus HOM05D002927 ORTHO05D003841 4.5e-06 58.2 288 23.6
BolC6t40424H Brassica oleracea HOM05D002927 ORTHO05D003841 4.5e-06 58.2 288 23.6


User provided reference genes

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