Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 8.1e-209 730.7 539 100.0
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 4.6e-180 635.2 539 78.8
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.3e-61 240.4 148 73.6
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 3.7e-60 236.9 148 71.6
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.5e-56 224.2 148 66.9
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.0e-54 218.8 148 67.6
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.8e-54 218.0 140 70.7
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.0e-54 217.2 140 68.6
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.3e-53 213.8 142 64.8
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 5.7e-53 213.0 144 68.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 7.4e-53 212.6 140 67.9
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 9.7e-53 212.2 143 66.4
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 9.7e-53 212.2 143 66.4
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 9.7e-53 212.2 141 67.4
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 9.7e-53 212.2 143 65.7
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 9.7e-53 212.2 143 64.3
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.2e-52 211.1 142 66.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 2.8e-52 210.7 141 68.1
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.8e-52 210.7 140 68.6
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 3.7e-52 210.3 140 69.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.7e-52 210.3 149 64.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 3.7e-52 210.3 142 65.5
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 3.7e-52 210.3 143 64.3
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 4.8e-52 209.9 141 66.0
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 8.2e-52 209.1 140 67.1
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 8.2e-52 209.1 142 66.2
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.4e-51 208.4 140 68.6
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.4e-51 207.6 140 67.9
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.4e-51 207.6 140 67.9
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.1e-51 207.2 150 62.7
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.1e-51 206.8 142 65.5
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 4.1e-51 206.8 143 65.0
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 4.1e-51 206.8 141 64.5
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.1e-51 206.8 143 63.6
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 5.3e-51 206.5 136 67.6
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.3e-51 206.5 142 63.4
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 6.9e-51 206.1 143 63.6
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 9.0e-51 205.7 140 67.1
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 9.0e-51 205.7 140 67.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.2e-50 205.3 141 65.2
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.2e-50 205.3 150 62.7
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.0e-50 204.5 142 65.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.0e-50 204.5 142 65.5
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.0e-50 204.5 141 66.0
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.6e-50 204.1 141 63.1
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 4.5e-50 203.4 141 66.0
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 4.5e-50 203.4 141 64.5
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 5.9e-50 203.0 144 62.5
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 5.9e-50 203.0 142 62.7
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 5.9e-50 203.0 142 64.8
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 7.7e-50 202.6 141 64.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.0e-49 202.2 149 60.4
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.0e-49 202.2 149 60.4
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.3e-49 201.8 142 62.0
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.7e-49 201.4 140 66.4
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 2.2e-49 201.1 141 63.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 2.2e-49 201.1 141 63.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 2.2e-49 201.1 142 64.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.1e-48 198.7 152 60.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.4e-48 198.4 142 63.4
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.4e-48 198.4 144 60.4
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.5e-48 197.6 148 60.1
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.2e-47 195.3 144 62.5
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-47 195.3 148 56.8
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-47 195.3 148 56.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.2e-47 195.3 140 62.1
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.1e-47 194.5 140 63.6
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 3.6e-47 193.7 145 61.4
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.4e-46 191.8 148 56.1
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.3e-46 191.0 148 57.4
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 3.0e-46 190.7 141 60.3
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.1e-45 188.7 141 59.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 188.7 148 54.7
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 188.7 148 54.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 188.7 148 54.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 188.7 148 54.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 188.7 148 54.7
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.5e-45 188.3 142 62.0
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 5.7e-45 186.4 141 59.6
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 7.4e-45 186.0 127 63.8
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 7.4e-45 186.0 144 59.0
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 9.7e-45 185.7 141 61.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.3e-44 185.3 148 56.1
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.2e-44 184.5 143 55.2
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 2.2e-44 184.5 141 58.9
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 6.3e-44 183.0 147 55.8
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.4e-43 181.8 141 56.7
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 2.4e-43 181.0 148 54.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 2.4e-43 181.0 145 55.9
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.2e-42 178.7 144 56.9
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.6e-42 177.6 141 55.3
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 3.4e-42 177.2 141 56.0
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.3e-41 175.3 140 55.7
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.9e-41 174.1 141 54.6
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.9e-41 174.1 141 54.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 5.0e-41 173.3 144 54.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 6.5e-41 172.9 140 54.3
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.9e-40 171.4 126 58.7
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.7e-39 167.5 148 51.4
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 7.9e-39 166.0 153 53.6
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.8e-38 164.9 137 54.0
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 3.0e-38 164.1 147 56.5
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 8.8e-38 162.5 131 55.7
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.1e-37 162.2 136 54.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 4.4e-37 160.2 110 64.5
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 7.4e-37 159.5 136 52.9
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 3.7e-36 157.1 151 47.7
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.4e-35 154.5 108 64.8
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 3.1e-35 154.1 110 60.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.5e-34 151.8 107 62.6
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.0e-34 151.4 136 51.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.3e-33 148.7 145 48.3
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 8.5e-33 146.0 137 48.9
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.1e-32 145.6 140 51.4
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 5.5e-32 143.3 99 67.7
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 7.2e-32 142.9 134 50.0
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 2.1e-31 141.4 98 66.3
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 2.7e-31 141.0 112 57.1
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.3e-28 132.1 97 60.8
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 8.2e-28 129.4 107 51.4
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 7.0e-27 126.3 134 44.0
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 3.5e-26 124.0 99 56.6
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.3e-25 122.1 109 50.5
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.7e-25 121.7 97 56.7
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 2.9e-25 120.9 140 45.7
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 2.9e-25 120.9 140 45.7
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 2.1e-23 114.8 133 40.6
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.7e-23 114.4 99 51.5
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.6e-21 107.8 105 49.5
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.7e-20 105.1 79 58.2
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.8e-20 104.4 109 46.8
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-19 102.4 87 51.7
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 5.4e-19 100.1 79 55.7
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 2.2e-17 94.7 64 59.4
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 6.5e-17 93.2 55 70.9
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.0e-13 81.6 45 75.6
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.3e-12 79.0 96 44.8
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.9e-12 77.0 44 72.7
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.1e-11 75.9 44 68.2
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.1e-11 75.9 44 70.5
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.4e-11 74.7 73 49.3
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.6e-10 72.0 43 67.4
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.6e-10 72.0 81 40.7
HanXRQChr14g0426811 Helianthus annuus HOM05D004639 ORTHO05D005201 3.5e-10 70.9 48 72.9
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 5.9e-10 70.1 39 74.4
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 2.3e-09 68.2 52 59.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 2.3e-09 68.2 44 61.4
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.8e-09 67.4 49 57.1
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 2.3e-06 58.2 35 68.6
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 6.8e-06 56.6 48 50.0


User provided reference genes

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