Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0385851 Helianthus annuus HOM05D000278 ORTHO05D004130 1.2e-49 199.5 96 100.0
DCAR_007030 Daucus carota HOM05D000278 ORTHO05D004130 4.3e-20 101.3 95 62.1
Lalb_Chr19g0127401 Lupinus albus HOM05D000278 ORTHO05D004130 5.6e-20 100.9 95 63.2
unitig_22.g5528 Utricularia gibba HOM05D000278 ORTHO05D004130 7.3e-20 100.5 61 85.2
unitig_8.g3931 Utricularia gibba HOM05D000278 ORTHO05D004130 7.3e-20 100.5 61 85.2
Psat5g092720 Pisum sativum HOM05D000278 ORTHO05D004130 9.5e-20 100.1 95 62.1
ECA234G0587 Erigeron canadensis HOM05D000278 ORTHO05D004130 1.2e-19 99.8 60 88.3
HanXRQChr17g0569181 Helianthus annuus HOM05D000278 ORTHO05D004130 1.2e-19 99.8 60 88.3
Lsat_1_v5_gn_4_2661 Lactuca sativa HOM05D000278 ORTHO05D004130 1.2e-19 99.8 60 88.3
Lsat_1_v5_gn_8_155141 Lactuca sativa HOM05D000278 ORTHO05D004130 1.2e-19 99.8 60 88.3
Psat0s3108g0080 Pisum sativum HOM05D000278 ORTHO05D015036 1.2e-19 99.8 95 62.1
THA.LOC104807780 Tarenaya hassleriana HOM05D000278 ORTHO05D004130 1.2e-19 99.8 92 62.0
Actinidia15123 Actinidia chinensis HOM05D000278 ORTHO05D004130 1.6e-19 99.4 92 63.0
Cc11_g16190 Coffea canephora HOM05D000278 ORTHO05D004130 1.6e-19 99.4 92 64.1
Lalb_Chr01g0021371 Lupinus albus HOM05D000278 ORTHO05D004130 1.6e-19 99.4 95 62.1
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 1.6e-19 99.4 95 61.1
Aqoxy3G01361 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 2.1e-19 99.0 92 63.0
Ca_25126_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004130 2.1e-19 99.0 92 63.0
Lj6A817T55 Lonicera japonica HOM05D000278 ORTHO05D004130 2.1e-19 99.0 92 63.0
TPR.G20618 Trifolium pratense HOM05D000278 ORTHO05D004130 2.1e-19 99.0 92 63.0
COL.COLO4_23539 Corchorus olitorius HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
Dinv14759 Davidia involucrata HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
Gohir.A01G157200 Gossypium hirsutum HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
Gohir.D01G153200 Gossypium hirsutum HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
Gohir.D12G150900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
Gorai.002G189700 Gossypium raimondii HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
Gorai.008G162400 Gossypium raimondii HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
SalBow8G2690 Salvia bowleyana HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
Thecc.02G267800 Theobroma cacao HOM05D000278 ORTHO05D004130 2.8e-19 98.6 60 86.7
GSVIVG01020856001 Vitis vinifera HOM05D000278 ORTHO05D004130 2.8e-19 98.6 61 83.6
arahy.Tifrunner.gnm1.ann1.K5BW40 Arachis hypogaea HOM05D000278 ORTHO05D004130 3.6e-19 98.2 92 62.0
arahy.Tifrunner.gnm1.ann1.W00XVX Arachis hypogaea HOM05D000278 ORTHO05D004130 3.6e-19 98.2 92 62.0
Glyma.11G244700 Glycine max HOM05D000278 ORTHO05D004130 3.6e-19 98.2 92 62.0
Glyma.18G012400 Glycine max HOM05D000278 ORTHO05D004130 3.6e-19 98.2 92 62.0
Oeu004469.1 Olea europaea HOM05D000278 ORTHO05D004130 3.6e-19 98.2 60 85.0
PSO017G1560 Papaver somniferum HOM05D000278 ORTHO05D004130 3.6e-19 98.2 60 85.0
PSO478G4577 Papaver somniferum HOM05D000278 ORTHO05D004130 3.6e-19 98.2 60 85.0
Prupe.1G240000 Prunus persica HOM05D000278 ORTHO05D004130 3.6e-19 98.2 60 85.0
Sed0010599 Sechium edule HOM05D000278 ORTHO05D004130 3.6e-19 98.2 60 85.0
VMungo1383G1502 Vigna mungo HOM05D000278 ORTHO05D004130 3.6e-19 98.2 92 62.0
BcaC05g26712 Brassica carinata HOM05D000278 ORTHO05D004130 4.7e-19 97.8 99 58.6
Haze_12299 Corylus avellana HOM05D000278 ORTHO05D004130 4.7e-19 97.8 92 62.0
Sc04g0009780 Simmondsia chinensis HOM05D000278 ORTHO05D004130 4.7e-19 97.8 60 85.0
GSVIVG01000590001 Vitis vinifera HOM05D000278 ORTHO05D004130 4.7e-19 97.8 61 83.6
FvH4_5g28870 Fragaria vesca HOM05D000278 ORTHO05D004130 6.2e-19 97.4 92 62.0
FAN04G3081 Fragaria x ananassa HOM05D000278 ORTHO05D004130 6.2e-19 97.4 92 62.0
FAN08G2630 Fragaria x ananassa HOM05D000278 ORTHO05D004130 6.2e-19 97.4 92 62.0
FAN13G1794 Fragaria x ananassa HOM05D000278 ORTHO05D004130 6.2e-19 97.4 92 62.0
FAN18G3434 Fragaria x ananassa HOM05D000278 ORTHO05D004130 6.2e-19 97.4 92 62.0
Gohir.A05G311900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 6.2e-19 97.4 60 86.7
Gorai.009G334400 Gossypium raimondii HOM05D000278 ORTHO05D004130 6.2e-19 97.4 60 86.7
Hma1.2p1_0815F.1_g222810 Hydrangea macrophylla HOM05D000278 ORTHO05D004130 6.2e-19 97.4 60 86.7
RcHm_v2.0_Chr4g0432301 Rosa chinensis HOM05D000278 ORTHO05D004130 6.2e-19 97.4 92 62.0
SGA_v2.0_scaffold87G27108 Striga asiatica HOM05D000278 ORTHO05D004130 6.2e-19 97.4 60 85.0
CANSAT01G1557 Cannabis sativa HOM05D000278 ORTHO05D004130 8.1e-19 97.1 60 85.0
Duzib248G0682 Durio zibethinus HOM05D000278 ORTHO05D004130 8.1e-19 97.1 60 85.0
Hma1.2p1_0079F.1_g041300 Hydrangea macrophylla HOM05D000278 ORTHO05D004130 8.1e-19 97.1 60 85.0
MD13G1106100 Malus domestica HOM05D000278 ORTHO05D004130 8.1e-19 97.1 60 83.3
Medtr3g086330 Medicago truncatula HOM05D000278 ORTHO05D004130 8.1e-19 97.1 61 82.0
Phvul.001G256700 Phaseolus vulgaris HOM05D000278 ORTHO05D004130 8.1e-19 97.1 92 60.9
PGR102G1580 Punica granatum HOM05D000278 ORTHO05D004130 8.1e-19 97.1 92 62.0
Aqoxy2G01992 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
BcaB03g12057 Brassica carinata HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
A08p26570 Brassica napus HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
C03p73450 Brassica napus HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
BolC3t19640H Brassica oleracea HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
CAN.G371.65 Capsicum annuum HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 85.0
ClCG08G017540 Citrullus lanatus HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
MELO3C010705.2 Cucumis melo HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
CsaV3_2G025080 Cucumis sativus L. HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
Duzib268G0205 Durio zibethinus HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
Migut.K00638 Erythranthe guttata HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 85.0
HanXRQChr05g0128801 Helianthus annuus HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 86.7
Lalb_Chr03g0039791 Lupinus albus HOM05D000278 ORTHO05D004130 1.1e-18 96.7 95 62.1
MD16G1106300 Malus domestica HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 81.7
Nn4g22514 Nelumbo nucifera HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
Nitab4.5_0000041g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 85.0
Nitab4.5_0012079g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 85.0
Peaxi162Scf00128g00627 Petunia axillaris HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 85.0
Potri.010G051700 Populus trichocarpa HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
SalBow2G1192 Salvia bowleyana HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 83.3
Solyc05g013990.3 Solanum lycopersicum HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 85.0
Sopen05g008940 Solanum pennellii HOM05D000278 ORTHO05D004130 1.1e-18 96.7 60 85.0
Actinidia37459 Actinidia chinensis HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 83.3
CSS0034236 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 83.3
Cpa.g.sc33.88 Carica papaya HOM05D000278 ORTHO05D004130 1.4e-18 96.3 61 80.3
Cfa009265 Carpinus fangiana HOM05D000278 ORTHO05D004130 1.4e-18 96.3 92 59.8
Ciclev10031191m.g Citrus clementina HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 83.3
Migut.E00224 Erythranthe guttata HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 85.0
Eucgr.B03239 Eucalyptus grandis HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 85.0
Manes.12G019200 Manihot esculenta HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 81.7
Oeu049171.1 Olea europaea HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 83.3
Sabra10G0018400 Salix brachista HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 81.7
vmacro16157 Vaccinium macrocarpon HOM05D000278 ORTHO05D004130 1.4e-18 96.3 60 83.3
MBI10_g17801_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004130 1.8e-18 95.9 60 83.3
Manes.13G019600 Manihot esculenta HOM05D000278 ORTHO05D004130 1.8e-18 95.9 60 83.3
Os06g0562600 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004130 1.8e-18 95.9 60 81.7
Aa31LG4G12290 Aethionema arabicum HOM05D000278 ORTHO05D004130 2.3e-18 95.5 60 80.0
Carub.0002s1419 Capsella rubella HOM05D000278 ORTHO05D004130 2.3e-18 95.5 60 81.7
Potri.008G182300 Populus trichocarpa HOM05D000278 ORTHO05D004130 2.3e-18 95.5 60 81.7
Hund06050 Selenicereus undatus HOM05D000278 ORTHO05D004130 2.3e-18 95.5 60 81.7
HPP92_001208 Vanilla planifolia HOM05D000278 ORTHO05D004130 2.3e-18 95.5 60 83.3
MSTRG.13335 Avicennia marina HOM05D000278 ORTHO05D004130 3.1e-18 95.1 60 81.7
BcaC01g01645 Brassica carinata HOM05D000278 ORTHO05D004130 3.1e-18 95.1 60 81.7
CDE02G0970 Ceratophyllum demersum HOM05D000278 ORTHO05D004130 3.1e-18 95.1 95 58.9
Gohir.D05G312900 Gossypium hirsutum HOM05D000278 ORTHO05D004130 3.1e-18 95.1 54 92.6
MSTRG.7958 Avicennia marina HOM05D000278 ORTHO05D004130 4.0e-18 94.7 60 81.7
Lj6g0014415 Lotus japonicus HOM05D000278 ORTHO05D004130 4.0e-18 94.7 92 59.8
THA.LOC104825542 Tarenaya hassleriana HOM05D000278 ORTHO05D004130 4.0e-18 94.7 60 81.7
TAR374G0849 Trochodendron aralioides HOM05D000278 ORTHO05D004130 4.0e-18 94.7 60 81.7
TAR622G1111 Trochodendron aralioides HOM05D000278 ORTHO05D004130 4.0e-18 94.7 60 81.7
Actinidia08112 Actinidia chinensis HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
AL1G40440 Arabidopsis lyrata HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
AT1G24510 Arabidopsis thaliana HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
BcaB03g14007 Brassica carinata HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
BcaC05g26520 Brassica carinata HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
BcaC06g35255 Brassica carinata HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
A07p12210 Brassica napus HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
A09p38830 Brassica napus HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
C05p25680 Brassica napus HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
C07p18170 Brassica napus HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
BolC7t42328H Brassica oleracea HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
BraA07t29005Z Brassica rapa HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
BraA09t39390Z Brassica rapa HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
Carub.0001s2560 Capsella rubella HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
CiPaw.05G176300 Carya illinoinensis HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 78.3
CDE09G0295 Ceratophyllum demersum HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
Dinv11027 Davidia involucrata HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 85.0
Thhalv10007324m.g Eutrema salsugineum HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
Sp1g23280 Schrenkiella parvula HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
TWI75G1086 Tripterygium wilfordii HOM05D000278 ORTHO05D004130 5.2e-18 94.4 60 81.7
Rhsim08G0045300 Rhododendron simsii HOM05D000278 ORTHO05D004130 6.8e-18 94.0 60 81.7
SEGI_03361 Sequoiadendron giganteum HOM05D000278 ORTHO05D004130 6.8e-18 94.0 60 81.7
TAR629G3233 Trochodendron aralioides HOM05D000278 ORTHO05D004130 6.8e-18 94.0 60 81.7
Ah.02g130390 Amaranthus hybridus HOM05D000278 ORTHO05D004130 8.9e-18 93.6 60 80.0
Ah.03g133570 Amaranthus hybridus HOM05D000278 ORTHO05D004130 8.9e-18 93.6 60 78.3
ATR0824G281 Amborella trichopoda HOM05D000278 ORTHO05D004130 8.9e-18 93.6 60 81.7
QL03p056030 Quercus lobata HOM05D000278 ORTHO05D004130 8.9e-18 93.6 60 81.7
Aa31LG7G9530 Aethionema arabicum HOM05D000278 ORTHO05D004130 1.2e-17 93.2 60 80.0
CARHR026610 Cardamine hirsuta HOM05D000278 ORTHO05D004130 1.2e-17 93.2 60 80.0
Sabra08G0138800 Salix brachista HOM05D000278 ORTHO05D004130 1.2e-17 93.2 60 80.0
Hund25414 Selenicereus undatus HOM05D000278 ORTHO05D004130 1.2e-17 93.2 92 58.7
BolC5t31296H Brassica oleracea HOM05D000278 ORTHO05D004130 1.5e-17 92.8 60 80.0
CAN.G658.3 Capsicum annuum HOM05D000278 ORTHO05D015036 1.5e-17 92.8 54 88.9
Zm00001eb118030 Zea mays HOM05D000278 ORTHO05D004130 1.5e-17 92.8 60 80.0
Zm00001eb298950 Zea mays HOM05D000278 ORTHO05D004130 1.5e-17 92.8 60 80.0
EL10As2g23192 Beta vulgaris HOM05D000278 ORTHO05D004130 2.0e-17 92.4 60 78.3
AUR62005529 Chenopodium quinoa HOM05D000278 ORTHO05D004130 2.0e-17 92.4 60 78.3
AUR62024208 Chenopodium quinoa HOM05D000278 ORTHO05D004130 2.0e-17 92.4 60 78.3
Nn3g16164 Nelumbo nucifera HOM05D000278 ORTHO05D004130 2.6e-17 92.0 60 78.3
Nn3g16624 Nelumbo nucifera HOM05D000278 ORTHO05D004130 2.6e-17 92.0 60 78.3
SMO339G0030 Selaginella moellendorffii HOM05D000278 ORTHO05D004130 5.8e-17 90.9 60 78.3
TWI18G0594 Tripterygium wilfordii HOM05D000278 ORTHO05D004130 5.8e-17 90.9 60 78.3
PGSC0003DMG401028572 Solanum tuberosum HOM05D000278 ORTHO05D004130 2.2e-16 89.0 54 87.0
Lj3C1063G7 Lonicera japonica HOM05D000278 ORTHO05D004130 4.9e-16 87.8 60 78.3
Mapoly0051s0088 Marchantia polymorpha HOM05D000278 ORTHO05D004130 6.4e-16 87.4 60 76.7
Pp3c20_23570 Physcomitrium patens HOM05D000278 ORTHO05D004130 1.1e-15 86.7 60 76.7
Oeu009693.1 Olea europaea HOM05D000278 ORTHO05D004130 3.2e-15 85.1 59 78.0
MCO07G493 Micromonas commoda HOM05D000278 ORTHO05D004130 4.1e-15 84.7 60 70.0
PRCOL_00003659 Prasinoderma coloniale HOM05D000278 ORTHO05D004130 9.2e-15 83.6 60 71.7
CBR_g40771 Chara braunii HOM05D000278 ORTHO05D004130 3.5e-14 81.6 60 70.0
Atru.chr11.2192 Acer truncatum HOM05D000278 ORTHO05D004130 2.3e-13 79.0 43 90.7
Cfa001637 Carpinus fangiana HOM05D000278 ORTHO05D004130 3.9e-13 78.2 60 66.7
Cre03.g156750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004130 1.1e-12 76.6 60 63.3
CAN.G44.1 Capsicum annuum HOM05D000278 ORTHO05D004130 5.6e-12 74.3 51 74.5
HanXRQChr16g0531081 Helianthus annuus HOM05D000278 ORTHO05D036348 5.6e-12 74.3 45 84.4
Aqoxy7G01857 Aquilegia oxysepala HOM05D000278 ORTHO05D004130 7.3e-12 73.9 81 56.8
HanXRQChr01g0030361 Helianthus annuus HOM05D000278 ORTHO05D036348 1.6e-11 72.8 45 82.2
HanXRQChr16g0504091 Helianthus annuus HOM05D000278 ORTHO05D036348 2.1e-11 72.4 45 82.2
Solyc04g045410.3 Solanum lycopersicum HOM05D000278 ORTHO05D004130 2.8e-11 72.0 94 51.1
CAN.G629.1 Capsicum annuum HOM05D000278 ORTHO05D004130 1.8e-10 69.3 60 61.7
Haze_26958 Corylus avellana HOM05D000278 ORTHO05D004130 4.0e-10 68.2 60 56.7
BcaC05g26519 Brassica carinata HOM05D000278 ORTHO05D004130 2.4e-07 58.9 42 73.8
Thhalv10019724m.g Eutrema salsugineum HOM05D000278 ORTHO05D004130 6.0e-06 54.3 34 76.5


User provided reference genes

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