Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 2.2e-76 288.9 143 100.0
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 8.8e-70 266.9 143 93.0
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 9.7e-69 263.5 139 92.1
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.8e-68 261.9 139 91.4
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 8.8e-54 213.8 143 70.6
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 3.3e-53 211.8 143 71.3
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 5.7e-53 211.1 143 71.3
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.3e-52 209.9 143 71.3
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.7e-52 209.5 143 71.3
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.2e-52 209.1 143 71.3
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 2.8e-52 208.8 143 69.9
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 3.7e-52 208.4 143 70.6
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.3e-52 207.6 143 69.9
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 6.3e-52 207.6 143 69.9
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 8.2e-52 207.2 143 71.3
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 8.2e-52 207.2 143 68.5
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 8.2e-52 207.2 143 69.2
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 8.2e-52 207.2 143 69.9
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.1e-51 206.8 143 70.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.4e-51 206.5 141 70.2
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.4e-51 206.5 143 68.5
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.8e-51 206.1 142 69.0
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.8e-51 206.1 143 71.3
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.4e-51 205.7 143 68.5
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 2.4e-51 205.7 143 69.2
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 3.1e-51 205.3 143 69.2
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 3.1e-51 205.3 143 68.5
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 3.1e-51 205.3 143 69.2
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.1e-51 204.9 143 70.6
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 4.1e-51 204.9 143 68.5
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 69.0
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 9.1e-51 203.8 143 69.2
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 9.1e-51 203.8 143 69.9
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 2.7e-50 202.2 143 69.2
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 3.5e-50 201.8 143 67.8
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 4.5e-50 201.4 140 70.7
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.5e-50 201.4 143 69.2
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 7.7e-50 200.7 143 66.4
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.0e-49 200.3 142 68.3
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-49 199.9 143 68.5
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.7e-49 199.5 143 69.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.7e-49 199.5 143 68.5
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 2.2e-49 199.1 143 67.8
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.2e-49 199.1 143 68.5
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.9e-49 198.7 142 69.0
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.8e-49 198.4 143 68.5
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 8.5e-49 197.2 143 66.4
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 8.5e-49 197.2 142 68.3
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.1e-48 196.8 143 65.7
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.1e-48 196.8 142 66.2
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.1e-48 196.8 143 67.1
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.5e-48 196.4 140 68.6
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-48 196.4 143 67.1
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.5e-48 196.4 143 67.1
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.2e-48 195.3 140 67.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 4.2e-48 194.9 137 68.6
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.2e-48 194.9 171 59.6
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 4.2e-48 194.9 143 66.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 7.2e-48 194.1 143 65.0
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.2e-48 194.1 143 65.7
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 9.4e-48 193.7 143 65.0
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 9.4e-48 193.7 142 66.2
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.2e-47 193.4 143 63.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.2e-47 193.4 143 63.6
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.2e-47 193.4 146 66.4
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.2e-47 193.4 146 66.4
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.2e-47 193.4 143 65.0
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.2e-47 193.4 143 63.6
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.6e-47 193.0 143 65.0
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.6e-47 193.0 143 65.0
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 1.6e-47 193.0 143 66.4
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 2.1e-47 192.6 143 65.7
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 2.1e-47 192.6 143 65.7
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 2.1e-47 192.6 143 65.7
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-47 192.2 143 65.0
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 2.7e-47 192.2 143 65.0
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.7e-47 192.2 143 66.4
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.7e-47 192.2 142 65.5
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.7e-47 192.2 135 68.9
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.6e-47 191.8 142 65.5
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.7e-47 191.4 142 65.5
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.7e-47 191.4 142 65.5
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 6.1e-47 191.0 143 65.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 6.1e-47 191.0 143 65.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 6.1e-47 191.0 143 65.0
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 6.1e-47 191.0 143 65.7
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.0e-46 190.3 143 65.0
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.0e-46 190.3 143 65.0
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 65.5
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.4e-46 189.9 143 65.0
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-46 189.9 143 65.0
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-46 189.5 143 64.3
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.8e-46 189.5 143 63.6
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 3.0e-46 188.7 142 64.8
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 4.0e-46 188.3 143 65.0
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.0e-46 188.3 142 65.5
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 4.0e-46 188.3 142 64.1
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 6.8e-46 187.6 143 63.6
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 6.8e-46 187.6 143 60.8
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 6.8e-46 187.6 141 62.4
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 6.8e-46 187.6 141 65.2
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 8.8e-46 187.2 142 64.8
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 8.8e-46 187.2 143 62.9
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.5e-45 186.4 141 62.4
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.5e-45 186.4 142 66.9
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.5e-45 186.4 138 64.5
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.6e-45 185.7 141 62.4
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.6e-45 185.7 141 64.5
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 2.6e-45 185.7 141 61.7
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 5.7e-45 184.5 141 64.5
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 9.8e-45 183.7 143 60.8
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.7e-44 183.0 127 67.7
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.7e-44 183.0 143 61.5
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.2e-44 182.6 143 65.0
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 4.8e-44 181.4 142 63.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 6.3e-44 181.0 141 63.1
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 6.3e-44 181.0 164 59.8
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 8.3e-44 180.6 192 51.0
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 8.3e-44 180.6 194 50.5
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 8.3e-44 180.6 194 50.5
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.1e-43 180.3 137 61.3
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.8e-43 179.5 136 64.7
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 2.4e-43 179.1 141 64.5
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 5.4e-43 177.9 145 62.1
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 9.1e-43 177.2 143 60.8
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.2e-42 176.8 127 66.1
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 2.0e-42 176.0 145 60.7
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.0e-42 176.0 127 65.4
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 4.5e-42 174.9 143 63.6
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.0e-41 173.7 127 63.8
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.3e-41 172.6 143 61.5
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 6.5e-41 171.0 140 60.7
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 8.6e-41 170.6 127 63.0
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.5e-40 169.9 143 60.8
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 4.2e-40 168.3 143 60.1
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 5.5e-40 167.9 119 68.1
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 7.2e-40 167.5 142 58.5
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.2e-39 166.8 141 63.8
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.0e-38 163.7 176 53.4
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 8.9e-38 160.6 143 56.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 4.4e-37 158.3 110 71.8
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.5e-37 157.5 143 55.9
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-33 146.7 136 55.1
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 5.0e-33 144.8 140 53.6
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 1.5e-32 143.3 142 52.8
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.1e-31 139.4 138 49.3
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.8e-31 139.0 142 48.6
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.6e-31 138.7 142 48.6
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.0e-30 137.1 138 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 8.9e-30 134.0 141 47.5
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 8.9e-30 134.0 146 52.1
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.5e-29 133.3 143 47.6
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 3.2e-27 125.6 290 33.8
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.7e-26 122.5 125 48.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 6.6e-25 117.9 130 46.2
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.6e-23 112.1 81 67.9
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 2.0e-21 106.3 81 64.2
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-18 95.9 103 48.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-18 95.9 103 48.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-18 95.9 103 48.5
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 7.8e-18 94.4 70 62.9
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 8.6e-17 90.9 119 40.3
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 8.6e-17 90.9 62 66.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 8.6e-17 90.9 62 66.1
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.5e-16 89.4 67 64.2
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.3e-16 89.0 71 62.0
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.2e-15 87.0 62 66.1
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 2.1e-15 86.3 108 44.4
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 3.6e-15 85.5 121 40.5
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 8.1e-15 84.3 116 44.8
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 5.2e-14 81.6 62 59.7
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 8.9e-14 80.9 113 46.9
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 3.7e-12 75.5 69 55.1
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 4.9e-12 75.1 69 53.6
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.2e-11 72.4 116 44.0
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.5e-08 62.8 45 66.7
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 2.1e-07 59.7 45 62.2
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.8e-07 59.3 41 70.7
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 6.2e-07 58.2 121 32.2
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.8e-06 54.7 39 66.7
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 8.9e-06 54.3 37 67.6


User provided reference genes

Program Settings