Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 5.1e-89 331.3 192 100.0
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 9.7e-56 220.7 194 67.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 2.2e-52 209.5 194 65.5
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 2.0e-48 196.4 200 65.5
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.2e-32 144.1 210 52.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 2.6e-32 142.9 162 56.8
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 4.4e-32 142.1 130 63.8
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 4.4e-32 142.1 192 52.1
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 9.7e-32 141.0 192 50.5
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.7e-31 139.0 91 79.1
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.7e-31 139.0 132 60.6
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 6.3e-31 138.3 170 51.2
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.3e-31 138.3 192 50.0
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 8.2e-31 137.9 191 50.3
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.1e-30 137.5 172 51.7
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.4e-30 137.1 183 49.7
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.4e-30 136.3 190 47.9
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.4e-30 136.3 197 52.8
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 2.4e-30 136.3 94 75.5
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 5.3e-30 135.2 91 76.9
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 5.3e-30 135.2 91 76.9
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 7.0e-30 134.8 92 76.1
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 9.1e-30 134.4 192 51.0
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 9.1e-30 134.4 94 74.5
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.2e-29 134.0 98 70.4
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.2e-29 134.0 94 73.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.6e-29 133.7 92 72.8
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.6e-29 133.7 94 72.3
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.0e-29 133.3 91 75.8
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 2.0e-29 133.3 91 75.8
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 2.0e-29 133.3 91 75.8
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.0e-29 133.3 188 53.7
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.7e-29 132.9 95 72.6
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 3.5e-29 132.5 98 69.4
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.5e-29 132.5 98 69.4
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.5e-29 132.5 95 71.6
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 3.5e-29 132.5 94 73.4
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 3.5e-29 132.5 94 73.4
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 4.5e-29 132.1 93 73.1
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 4.5e-29 132.1 146 52.1
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 4.5e-29 132.1 95 71.6
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 7.7e-29 131.3 94 72.3
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 1.0e-28 131.0 94 74.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 1.3e-28 130.6 94 70.2
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.3e-28 130.6 91 75.8
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.7e-28 130.2 92 75.0
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 1.7e-28 130.2 94 74.5
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.7e-28 130.2 167 52.7
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 2.2e-28 129.8 181 44.2
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 3.8e-28 129.0 95 70.5
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.8e-28 129.0 192 48.4
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.8e-28 129.0 95 69.5
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.8e-28 129.0 190 47.9
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 5.0e-28 128.6 96 67.7
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 5.0e-28 128.6 92 69.6
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 5.0e-28 128.6 91 72.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 5.0e-28 128.6 98 68.4
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 8.5e-28 127.9 92 68.5
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 8.5e-28 127.9 92 69.6
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 8.5e-28 127.9 92 68.5
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 8.5e-28 127.9 94 68.1
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 8.5e-28 127.9 102 70.6
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 8.5e-28 127.9 98 70.4
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-27 127.5 92 68.5
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.1e-27 127.5 94 68.1
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.1e-27 127.5 182 47.8
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.1e-27 127.5 94 69.1
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.1e-27 127.5 190 51.6
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.5e-27 127.1 96 70.8
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.9e-27 126.7 92 75.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 2.5e-27 126.3 92 72.8
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 2.5e-27 126.3 92 71.7
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.5e-27 126.3 96 66.7
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 3.2e-27 125.9 91 69.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 5.5e-27 125.2 90 70.0
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 5.5e-27 125.2 90 71.1
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 7.2e-27 124.8 200 47.5
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 7.2e-27 124.8 192 43.2
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 7.2e-27 124.8 189 50.3
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.2e-27 124.8 186 46.8
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 7.2e-27 124.8 94 70.2
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 9.4e-27 124.4 184 47.8
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 9.4e-27 124.4 91 70.3
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.2e-26 124.0 91 69.2
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.2e-26 124.0 91 69.2
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.2e-26 124.0 94 64.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.2e-26 124.0 97 66.0
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-26 123.6 90 67.8
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.6e-26 123.6 90 67.8
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.6e-26 123.6 90 67.8
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.6e-26 123.6 92 68.5
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.1e-26 123.2 189 47.1
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.1e-26 123.2 191 46.1
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.7e-26 122.9 92 67.4
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.7e-26 122.9 217 41.5
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 3.6e-26 122.5 90 66.7
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 4.7e-26 122.1 90 67.8
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 1.4e-25 120.6 135 54.1
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.3e-25 119.8 123 56.9
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.0e-25 119.4 91 63.7
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.2e-24 117.5 90 68.9
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.2e-24 117.5 84 69.0
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 2.0e-24 116.7 79 77.2
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 4.8e-23 112.1 135 48.9
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 9.1e-22 107.8 151 46.4
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.6e-21 107.1 93 61.3
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 4.5e-21 105.5 76 68.4
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.7e-20 103.6 99 56.6
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.3e-20 103.2 87 62.1
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 5.5e-19 98.6 76 64.5
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 7.2e-19 98.2 76 64.5
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 9.5e-19 97.8 74 70.3
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 9.5e-19 97.8 84 54.8
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.2e-18 97.4 86 58.1
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 3.6e-18 95.9 71 69.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.0e-17 92.8 103 51.5
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.2e-13 80.9 79 54.4
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.6e-13 80.5 56 73.2
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.7e-12 77.0 60 71.7
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 2.3e-12 76.6 97 45.4
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.9e-12 76.3 86 40.7
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.6e-10 70.5 56 69.6
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 8.0e-10 68.2 55 61.8
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 4.0e-09 65.9 135 40.0
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 4.0e-09 65.9 80 50.0
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.3e-07 60.8 86 34.9
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 2.2e-07 60.1 41 70.7
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 2.9e-07 59.7 62 45.2
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 1.1e-06 57.8 39 71.8
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 7.0e-06 55.1 106 39.6


User provided reference genes

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