Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0385351 Helianthus annuus HOM05D003230 ORTHO05D003680 1.8e-66 255.8 129 100.0
HanXRQChr11g0327201 Helianthus annuus HOM05D003230 ORTHO05D003680 3.7e-11 72.0 46 80.4
Lsat_1_v5_gn_4_50621 Lactuca sativa HOM05D003230 ORTHO05D003680 1.4e-10 70.1 46 78.3
Lj3C891G10 Lonicera japonica HOM05D003230 ORTHO05D003680 1.4e-10 70.1 50 70.0
HanXRQChr17g0556021 Helianthus annuus HOM05D003230 ORTHO05D003680 3.2e-10 68.9 87 54.0
DCAR_020396 Daucus carota HOM05D003230 ORTHO05D003680 5.4e-10 68.2 46 73.9
ECA234G3139 Erigeron canadensis HOM05D003230 ORTHO05D003680 5.4e-10 68.2 46 76.1
TAR374G1299 Trochodendron aralioides HOM05D003230 ORTHO05D003680 5.4e-10 68.2 67 53.7
Actinidia34293 Actinidia chinensis HOM05D003230 ORTHO05D003680 9.2e-10 67.4 45 71.1
Rhsim03G0218900 Rhododendron simsii HOM05D003230 ORTHO05D003680 9.2e-10 67.4 46 71.7
CSS0035431 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 1.6e-09 66.6 46 67.4
DCAR_010553 Daucus carota HOM05D003230 ORTHO05D003680 1.6e-09 66.6 46 69.6
Nn7g38179 Nelumbo nucifera HOM05D003230 ORTHO05D003680 1.6e-09 66.6 46 71.7
arahy.Tifrunner.gnm1.ann1.X6Z9M4 Arachis hypogaea HOM05D003230 ORTHO05D003680 2.0e-09 66.2 46 69.6
Sc01g0010940 Simmondsia chinensis HOM05D003230 ORTHO05D003680 2.0e-09 66.2 46 69.6
CSS0032691 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 2.7e-09 65.9 46 67.4
Lalb_Chr02g0144281 Lupinus albus HOM05D003230 ORTHO05D003680 2.7e-09 65.9 46 69.6
HPP92_025402 Vanilla planifolia HOM05D003230 ORTHO05D003680 2.7e-09 65.9 46 69.6
Actinidia08726 Actinidia chinensis HOM05D003230 ORTHO05D003680 3.5e-09 65.5 62 59.7
Cfa011873 Carpinus fangiana HOM05D003230 ORTHO05D003680 3.5e-09 65.5 46 67.4
Lalb_Chr06g0164471 Lupinus albus HOM05D003230 ORTHO05D003680 3.5e-09 65.5 46 67.4
PSO063G4824 Papaver somniferum HOM05D003230 ORTHO05D003680 3.5e-09 65.5 46 67.4
PSO384G4355 Papaver somniferum HOM05D003230 ORTHO05D003680 3.5e-09 65.5 46 67.4
TAR375G0039 Trochodendron aralioides HOM05D003230 ORTHO05D003680 3.5e-09 65.5 46 69.6
CiPaw.12G073700 Carya illinoinensis HOM05D003230 ORTHO05D003680 4.6e-09 65.1 46 67.4
ClCG01G001210 Citrullus lanatus HOM05D003230 ORTHO05D003680 4.6e-09 65.1 46 67.4
MELO3C005814.2 Cucumis melo HOM05D003230 ORTHO05D003680 4.6e-09 65.1 46 67.4
Eucgr.E01133 Eucalyptus grandis HOM05D003230 ORTHO05D003680 4.6e-09 65.1 46 67.4
Sed0010900 Sechium edule HOM05D003230 ORTHO05D003680 4.6e-09 65.1 46 67.4
Actinidia28274 Actinidia chinensis HOM05D003230 ORTHO05D003680 6.0e-09 64.7 102 45.1
Cpa.g.sc37.119 Carica papaya HOM05D003230 ORTHO05D003680 6.0e-09 64.7 46 67.4
Ciclev10020756m.g Citrus clementina HOM05D003230 ORTHO05D003680 6.0e-09 64.7 46 67.4
Eucgr.D02540 Eucalyptus grandis HOM05D003230 ORTHO05D003680 6.0e-09 64.7 47 66.0
GSVIVG01019720001 Vitis vinifera HOM05D003230 ORTHO05D003680 6.0e-09 64.7 46 67.4
Atru.chr9.2608 Acer truncatum HOM05D003230 ORTHO05D003680 7.8e-09 64.3 46 65.2
CsaV3_5G001330 Cucumis sativus L. HOM05D003230 ORTHO05D003680 7.8e-09 64.3 46 65.2
ECA232G3091 Erigeron canadensis HOM05D000068 ORTHO05D000084 7.8e-09 64.3 46 65.2
MBI04_g04799_MAGBIO Magnolia biondii HOM05D003230 ORTHO05D003680 7.8e-09 64.3 62 56.5
QL02p026579 Quercus lobata HOM05D003230 ORTHO05D003680 7.8e-09 64.3 46 65.2
QL12p002913 Quercus lobata HOM05D003230 ORTHO05D003680 7.8e-09 64.3 46 65.2
SGA_v2.0_scaffold59G20783 Striga asiatica HOM05D003230 ORTHO05D003680 7.8e-09 64.3 49 67.3
CSS0018524 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 1.0e-08 63.9 102 42.2
Cc02_g00530 Coffea canephora HOM05D003230 ORTHO05D003680 1.0e-08 63.9 45 68.9
Hma1.2p1_0115F.1_g055850 Hydrangea macrophylla HOM05D003230 ORTHO05D003680 1.0e-08 63.9 106 46.2
Prupe.5G137500 Prunus persica HOM05D003230 ORTHO05D003680 1.0e-08 63.9 47 63.8
PGR042G1295 Punica granatum HOM05D003230 ORTHO05D003680 1.0e-08 63.9 47 61.7
Sed0000082 Sechium edule HOM05D003230 ORTHO05D003680 1.0e-08 63.9 46 65.2
Hund25962 Selenicereus undatus HOM05D003230 ORTHO05D003680 1.0e-08 63.9 46 65.2
Lsat_1_v5_gn_7_23521 Lactuca sativa HOM05D003230 ORTHO05D003680 1.3e-08 63.5 102 43.1
Peaxi162Scf00542g00014 Petunia axillaris HOM05D003230 ORTHO05D003680 1.3e-08 63.5 47 68.1
Rhsim09G0211400 Rhododendron simsii HOM05D003230 ORTHO05D003680 1.3e-08 63.5 62 59.7
COL.COLO4_20922 Corchorus olitorius HOM05D003230 ORTHO05D003680 1.7e-08 63.2 45 68.9
ECA236G1073 Erigeron canadensis HOM05D003230 ORTHO05D003680 1.7e-08 63.2 102 42.2
TWI60G0278 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 1.7e-08 63.2 46 65.2
TWI81G0087 Tripterygium wilfordii HOM05D003230 ORTHO05D003680 1.7e-08 63.2 46 65.2
HPP92_015201 Vanilla planifolia HOM05D003230 ORTHO05D003680 1.7e-08 63.2 47 68.1
HPP92_025471 Vanilla planifolia HOM05D003230 ORTHO05D003680 1.7e-08 63.2 44 70.5
MSTRG.26946 Avicennia marina HOM05D003230 ORTHO05D003680 2.3e-08 62.8 47 70.2
EL10Ac3g06251 Beta vulgaris HOM05D003230 ORTHO05D003680 2.3e-08 62.8 46 67.4
CDE02G3182 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 2.3e-08 62.8 46 65.2
Dinv17274 Davidia involucrata HOM05D003230 ORTHO05D003680 2.3e-08 62.8 47 66.0
Glyma.10G295500 Glycine max HOM05D003230 ORTHO05D003680 2.3e-08 62.8 87 44.8
Glyma.20G245400 Glycine max HOM05D003230 ORTHO05D003680 2.3e-08 62.8 87 44.8
Sp6g07030 Schrenkiella parvula HOM05D003230 ORTHO05D003680 2.3e-08 62.8 87 42.5
vmacro06480 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 2.3e-08 62.8 46 71.7
vmacro10177 Vaccinium macrocarpon HOM05D003230 ORTHO05D003680 2.3e-08 62.8 62 61.3
VMungo0720G2040 Vigna mungo HOM05D003230 ORTHO05D003680 2.3e-08 62.8 87 44.8
BcaC03g16395 Brassica carinata HOM05D003230 ORTHO05D003680 3.0e-08 62.4 87 42.5
CANSAT21G1439 Cannabis sativa HOM05D003230 ORTHO05D003680 3.0e-08 62.4 46 65.2
Migut.F00114 Erythranthe guttata HOM05D003230 ORTHO05D003680 3.0e-08 62.4 48 68.8
Lalb_Chr21g0307571 Lupinus albus HOM05D003230 ORTHO05D003680 3.0e-08 62.4 87 43.7
Medtr1g116510 Medicago truncatula HOM05D003230 ORTHO05D003680 3.0e-08 62.4 88 43.2
Gohir.D11G017100 Gossypium hirsutum HOM05D003230 ORTHO05D003680 3.9e-08 62.0 62 58.1
MD06G1127700 Malus domestica HOM05D003230 ORTHO05D003680 3.9e-08 62.0 47 59.6
MD14G1143500 Malus domestica HOM05D003230 ORTHO05D003680 3.9e-08 62.0 46 65.2
PGR031G1665 Punica granatum HOM05D003230 ORTHO05D003680 3.9e-08 62.0 47 63.8
TPR.G10396 Trifolium pratense HOM05D003230 ORTHO05D003680 3.9e-08 62.0 87 43.7
Actinidia18693 Actinidia chinensis HOM05D003230 ORTHO05D003680 5.0e-08 61.6 102 44.1
Aqoxy5G04400 Aquilegia oxysepala HOM05D003230 ORTHO05D003680 5.0e-08 61.6 46 67.4
BcaB05g23900 Brassica carinata HOM05D003230 ORTHO05D003680 5.0e-08 61.6 87 41.4
Dinv10539 Davidia involucrata HOM05D003230 ORTHO05D003680 5.0e-08 61.6 46 65.2
Dinv29185 Davidia involucrata HOM05D003230 ORTHO05D003680 5.0e-08 61.6 104 43.3
Duzib068G0649 Durio zibethinus HOM05D003230 ORTHO05D003680 5.0e-08 61.6 62 56.5
HanXRQChr04g0116771 Helianthus annuus HOM05D003230 ORTHO05D003680 5.0e-08 61.6 102 42.2
SalBow4G2554 Salvia bowleyana HOM05D003230 ORTHO05D003680 5.0e-08 61.6 49 67.3
Thecc.03G213500 Theobroma cacao HOM05D003230 ORTHO05D003680 5.0e-08 61.6 62 58.1
unitig_747.g21704 Utricularia gibba HOM05D003230 ORTHO05D003680 5.0e-08 61.6 47 66.0
EL10Ac8g20374 Beta vulgaris HOM05D003230 ORTHO05D003680 6.6e-08 61.2 62 56.5
AUR62014810 Chenopodium quinoa HOM05D003230 ORTHO05D003680 6.6e-08 61.2 45 66.7
AUR62017004 Chenopodium quinoa HOM05D003230 ORTHO05D003680 6.6e-08 61.2 45 66.7
Lsat_1_v5_gn_0_9600 Lactuca sativa HOM05D003230 ORTHO05D003680 6.6e-08 61.2 102 43.1
Phvul.007G004400 Phaseolus vulgaris HOM05D003230 ORTHO05D003680 6.6e-08 61.2 86 44.2
SGA_v2.0_scaffold165G38215 Striga asiatica HOM05D003230 ORTHO05D003680 6.6e-08 61.2 49 65.3
AL6G44380 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 8.6e-08 60.8 87 42.5
AT4G10430 Arabidopsis thaliana HOM05D003230 ORTHO05D003680 8.6e-08 60.8 87 42.5
Carub.0006s2906 Capsella rubella HOM05D003230 ORTHO05D003680 8.6e-08 60.8 87 42.5
CAN.G303.65 Capsicum annuum HOM05D003230 ORTHO05D003680 8.6e-08 60.8 46 65.2
FAN04G1600 Fragaria x ananassa HOM05D003230 ORTHO05D003680 8.6e-08 60.8 83 45.8
FAN08G0072 Fragaria x ananassa HOM05D003230 ORTHO05D003680 8.6e-08 60.8 83 45.8
FAN13G1021 Fragaria x ananassa HOM05D003230 ORTHO05D003680 8.6e-08 60.8 83 45.8
FAN18G2848 Fragaria x ananassa HOM05D003230 ORTHO05D003680 8.6e-08 60.8 83 45.8
Lj2A147G46 Lonicera japonica HOM05D003230 ORTHO05D003680 8.6e-08 60.8 46 63.0
Potri.001G454400 Populus trichocarpa HOM05D003230 ORTHO05D003680 8.6e-08 60.8 47 61.7
Potri.011G147500 Populus trichocarpa HOM05D003230 ORTHO05D003680 8.6e-08 60.8 47 61.7
unitig_578.g16669 Utricularia gibba HOM05D003230 ORTHO05D003680 8.6e-08 60.8 47 66.0
Duzib084G0151 Durio zibethinus HOM05D003230 ORTHO05D003680 1.1e-07 60.5 46 63.0
Thhalv10028773m.g Eutrema salsugineum HOM05D003230 ORTHO05D003680 1.1e-07 60.5 87 41.4
Gohir.A11G017300 Gossypium hirsutum HOM05D003230 ORTHO05D003680 1.1e-07 60.5 102 39.2
Sp1g28680 Schrenkiella parvula HOM05D003230 ORTHO05D003680 1.1e-07 60.5 46 63.0
BcaC08g43889 Brassica carinata HOM05D003230 ORTHO05D003680 1.5e-07 60.1 67 46.3
A09p33080 Brassica napus HOM05D003230 ORTHO05D003680 1.5e-07 60.1 67 46.3
C06p12740 Brassica napus HOM05D003230 ORTHO05D003680 1.5e-07 60.1 67 46.3
BolC6t36431H Brassica oleracea HOM05D003230 ORTHO05D003680 1.5e-07 60.1 67 46.3
BraA09t38852Z Brassica rapa HOM05D003230 ORTHO05D003680 1.5e-07 60.1 67 46.3
CARHR256220 Cardamine hirsuta HOM05D003230 ORTHO05D003680 1.5e-07 60.1 87 41.4
Migut.F00964 Erythranthe guttata HOM05D003230 ORTHO05D003680 1.5e-07 60.1 47 63.8
AL6G44360 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 1.9e-07 59.7 87 41.4
Thhalv10008088m.g Eutrema salsugineum HOM05D003230 ORTHO05D003680 1.9e-07 59.7 67 46.3
Gorai.007G018000 Gossypium raimondii HOM05D003230 ORTHO05D003680 2.5e-07 59.3 102 38.2
Manes.01G000300 Manihot esculenta HOM05D003230 ORTHO05D003680 2.5e-07 59.3 46 63.0
Gohir.A12G243700 Gossypium hirsutum HOM05D003230 ORTHO05D003680 3.3e-07 58.9 41 68.3
RcHm_v2.0_Chr7g0188151 Rosa chinensis HOM05D003230 ORTHO05D003680 3.3e-07 58.9 83 44.6
SHI06883 Sapria himalayana HOM05D003230 ORTHO05D003680 3.3e-07 58.9 44 65.9
THA.LOC104806468 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 3.3e-07 58.9 87 39.1
Aa31LG9G11620 Aethionema arabicum HOM05D003230 ORTHO05D003680 4.3e-07 58.5 86 40.7
A02p26560 Brassica napus HOM05D003230 ORTHO05D003680 4.3e-07 58.5 88 42.0
BolC2t10266H Brassica oleracea HOM05D003230 ORTHO05D003680 4.3e-07 58.5 88 42.0
BraA02t07659Z Brassica rapa HOM05D003230 ORTHO05D003680 4.3e-07 58.5 88 42.0
Ca_11396_v3 Cicer arietinum L. HOM05D003230 ORTHO05D003680 4.3e-07 58.5 87 42.5
Duzib205G1067 Durio zibethinus HOM05D003230 ORTHO05D003680 4.3e-07 58.5 62 56.5
Sabra11G0132600 Salix brachista HOM05D003230 ORTHO05D003680 4.3e-07 58.5 63 54.0
THA.LOC104813070 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 4.3e-07 58.5 87 37.9
C02p42280 Brassica napus HOM05D003230 ORTHO05D003680 5.6e-07 58.2 88 42.0
Nitab4.5_0000021g0290 Nicotiana tabacum HOM05D003230 ORTHO05D003680 5.6e-07 58.2 102 39.2
Nitab4.5_0002691g0010 Nicotiana tabacum HOM05D003230 ORTHO05D003680 5.6e-07 58.2 102 39.2
Pp3c9_18360 Physcomitrium patens HOM05D003230 ORTHO05D003680 5.6e-07 58.2 78 41.0
Solyc03g096810.3 Solanum lycopersicum HOM05D003230 ORTHO05D003680 5.6e-07 58.2 102 39.2
Sopen03g027550 Solanum pennellii HOM05D003230 ORTHO05D003680 5.6e-07 58.2 102 39.2
PGSC0003DMG400000544 Solanum tuberosum HOM05D003230 ORTHO05D003680 5.6e-07 58.2 102 39.2
Ah.09g237290 Amaranthus hybridus HOM05D003230 ORTHO05D003680 7.3e-07 57.8 45 60.0
ATR0579G025 Amborella trichopoda HOM05D003230 ORTHO05D003680 7.3e-07 57.8 59 54.2
CiPaw.11G106000 Carya illinoinensis HOM05D003230 ORTHO05D003680 7.3e-07 57.8 46 63.0
Gohir.A11G017400 Gossypium hirsutum HOM05D003230 ORTHO05D003680 7.3e-07 57.8 102 37.3
Gohir.D11G017200 Gossypium hirsutum HOM05D003230 ORTHO05D003680 7.3e-07 57.8 102 37.3
Gorai.007G018100 Gossypium raimondii HOM05D003230 ORTHO05D003680 7.3e-07 57.8 102 37.3
CDE04G1112 Ceratophyllum demersum HOM05D003230 ORTHO05D003680 9.5e-07 57.4 46 63.0
Pp3c9_21850 Physcomitrium patens HOM05D003230 ORTHO05D003680 9.5e-07 57.4 66 43.9
MSTRG.8552 Avicennia marina HOM05D003230 ORTHO05D003680 1.6e-06 56.6 104 44.2
SalBow2G3519 Salvia bowleyana HOM05D003230 ORTHO05D003680 1.6e-06 56.6 104 43.3
Os08g0152800 Oryza sativa ssp. japonica HOM05D003230 ORTHO05D003680 2.8e-06 55.8 46 60.9
BcaC07g37565 Brassica carinata HOM05D003230 ORTHO05D003680 3.6e-06 55.5 46 60.9
A08p08660 Brassica napus HOM05D003230 ORTHO05D003680 3.6e-06 55.5 46 60.9
BraA08t32879Z Brassica rapa HOM05D003230 ORTHO05D003680 3.6e-06 55.5 46 60.9
Oeu063746.1 Olea europaea HOM05D003230 ORTHO05D003680 4.7e-06 55.1 102 43.1
THA.LOC104815499 Tarenaya hassleriana HOM05D003230 ORTHO05D003680 4.7e-06 55.1 87 40.2
Carub.0001s3142 Capsella rubella HOM05D003230 ORTHO05D003680 6.2e-06 54.7 46 58.7
Pp3c15_14570 Physcomitrium patens HOM05D003230 ORTHO05D003680 6.2e-06 54.7 66 43.9
Pp3c15_17280 Physcomitrium patens HOM05D003230 ORTHO05D003680 6.2e-06 54.7 78 39.7
Zm00001eb416220 Zea mays HOM05D003230 ORTHO05D003680 6.2e-06 54.7 46 60.9
AL1G47600 Arabidopsis lyrata HOM05D003230 ORTHO05D003680 8.1e-06 54.3 46 58.7
Os02g0106800 Oryza sativa ssp. japonica HOM05D003230 ORTHO05D003680 8.1e-06 54.3 47 59.6


User provided reference genes

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