Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0384181 Helianthus annuus HOM05D001825 ORTHO05D010533 2.8e-140 501.9 249 100.0
BcaC06g35196 Brassica carinata HOM05D001825 ORTHO05D002336 1.2e-50 204.1 188 61.7
BolC7t42385H Brassica oleracea HOM05D001825 ORTHO05D002336 2.5e-43 179.9 193 54.9
RcHm_v2.0_Chr7g0238001 Rosa chinensis HOM05D001825 ORTHO05D010533 7.1e-43 178.3 224 50.4
RcHm_v2.0_Chr5g0039511 Rosa chinensis HOM05D001825 ORTHO05D010533 8.7e-41 171.4 224 49.1
AUR62043748 Chenopodium quinoa HOM05D001825 ORTHO05D010533 3.1e-38 162.9 192 51.6
BraA09t38092Z Brassica rapa HOM05D001825 ORTHO05D010533 5.5e-35 152.1 134 64.2
Lalb_Chr10g0099901 Lupinus albus HOM05D001825 ORTHO05D010533 5.5e-35 152.1 219 46.1
Haze_18656 Corylus avellana HOM05D001825 ORTHO05D002336 1.0e-33 147.9 221 45.7
CBR_g26350 Chara braunii HOM05D001825 ORTHO05D002336 3.7e-31 139.4 102 69.6
Lj6C763G9 Lonicera japonica HOM05D001825 ORTHO05D002336 7.7e-29 131.7 234 44.9
HanXRQChr07g0188451 Helianthus annuus HOM05D000882 ORTHO05D001142 5.1e-25 119.0 112 59.8
SMO144G0049 Selaginella moellendorffii HOM05D001825 ORTHO05D002336 2.6e-24 116.7 77 74.0
SEGI_36261 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 3.3e-24 116.3 77 74.0
C07p18770 Brassica napus HOM05D001825 ORTHO05D002336 2.2e-23 113.6 119 57.1
RcHm_v2.0_Chr1g0328271 Rosa chinensis HOM05D001825 ORTHO05D010533 5.3e-22 109.0 216 38.4
Psat2g126080 Pisum sativum HOM05D001085 ORTHO05D010533 5.9e-21 105.5 151 47.0
SalBow8G2594 Salvia bowleyana HOM05D001825 ORTHO05D002336 2.2e-20 103.6 92 65.2
unitig_26.g10265 Utricularia gibba HOM05D001825 ORTHO05D002336 5.0e-20 102.4 96 63.5
AUR62044459 Chenopodium quinoa HOM05D001825 ORTHO05D010533 6.5e-20 102.1 185 39.5
Cfa018613 Carpinus fangiana HOM05D001825 ORTHO05D002336 1.9e-19 100.5 96 62.5
SalBow8G3841 Salvia bowleyana HOM05D001825 ORTHO05D002336 2.5e-19 100.1 96 62.5
unitig_749.g13182 Utricularia gibba HOM05D001825 ORTHO05D002336 2.5e-19 100.1 96 62.5
Ah.11g045010 Amaranthus hybridus HOM05D001825 ORTHO05D002336 3.2e-19 99.8 96 61.5
Cfa019793 Carpinus fangiana HOM05D001825 ORTHO05D002336 4.2e-19 99.4 96 61.5
CDE01G0229 Ceratophyllum demersum HOM05D001825 ORTHO05D002336 5.5e-19 99.0 95 62.1
Nitab4.5_0004412g0050 Nicotiana tabacum HOM05D001825 ORTHO05D002336 5.5e-19 99.0 72 68.1
ClCG05G022880 Citrullus lanatus HOM05D001825 ORTHO05D002336 7.2e-19 98.6 95 62.1
vmacro07999 Vaccinium macrocarpon HOM05D001825 ORTHO05D002336 7.2e-19 98.6 95 62.1
Actinidia39822 Actinidia chinensis HOM05D001825 ORTHO05D002336 9.4e-19 98.2 124 50.8
Nitab4.5_0003823g0090 Nicotiana tabacum HOM05D001825 ORTHO05D002336 9.4e-19 98.2 96 61.5
Nitab4.5_0004895g0070 Nicotiana tabacum HOM05D001825 ORTHO05D002336 9.4e-19 98.2 96 61.5
Peaxi162Scf00382g00122 Petunia axillaris HOM05D001825 ORTHO05D002336 9.4e-19 98.2 96 61.5
Nitab4.5_0010801g0030 Nicotiana tabacum HOM05D001825 ORTHO05D002336 3.6e-18 96.3 100 58.0
Nitab4.5_0011561g0040 Nicotiana tabacum HOM05D001825 ORTHO05D002336 3.6e-18 96.3 100 58.0
Peaxi162Scf00013g00935 Petunia axillaris HOM05D001825 ORTHO05D002336 3.6e-18 96.3 100 58.0
Actinidia16634 Actinidia chinensis HOM05D001825 ORTHO05D010533 4.7e-18 95.9 56 87.5
MBI14_g22129_MAGBIO Magnolia biondii HOM05D001825 ORTHO05D002336 4.7e-18 95.9 56 87.5
MBI16_g23307_MAGBIO Magnolia biondii HOM05D001825 ORTHO05D002336 4.7e-18 95.9 56 87.5
SalBow1G3956 Salvia bowleyana HOM05D001825 ORTHO05D002336 4.7e-18 95.9 56 87.5
vmacro10543 Vaccinium macrocarpon HOM05D001825 ORTHO05D002336 6.1e-18 95.5 95 61.1
CAN.G438.129 Capsicum annuum HOM05D001825 ORTHO05D002336 2.0e-16 90.5 79 58.2
BcaC05g26446 Brassica carinata HOM05D001825 ORTHO05D010533 3.3e-16 89.7 187 38.0
BolC7t44001H Brassica oleracea HOM05D001825 ORTHO05D002336 9.7e-16 88.2 247 31.6
RcHm_v2.0_Chr1g0316561 Rosa chinensis HOM05D001825 ORTHO05D010533 8.2e-15 85.1 95 52.6
ECA234G2809 Erigeron canadensis HOM05D001825 ORTHO05D010533 1.4e-14 84.3 62 71.0
Nitab4.5_0001599g0020 Nicotiana tabacum HOM05D001825 ORTHO05D002336 1.4e-14 84.3 78 56.4
arahy.Tifrunner.gnm1.ann1.I3PUBY Arachis hypogaea HOM05D001825 ORTHO05D002336 1.8e-14 84.0 285 28.8
RcHm_v2.0_Chr4g0401841 Rosa chinensis HOM05D001825 ORTHO05D010533 4.1e-14 82.8 76 60.5
RcHm_v2.0_Chr4g0434251 Rosa chinensis HOM05D001825 ORTHO05D010533 4.1e-14 82.8 75 61.3
Duzib068G0381 Durio zibethinus HOM05D001825 ORTHO05D002336 1.6e-13 80.9 39 94.9
Migut.L01084 Erythranthe guttata HOM05D001825 ORTHO05D002336 1.6e-13 80.9 39 94.9
Haze_26341 Corylus avellana HOM05D001825 ORTHO05D002336 4.5e-13 79.3 277 26.0
BcaC04g21416 Brassica carinata HOM05D001825 ORTHO05D002336 5.9e-13 79.0 43 90.7
A06p42500 Brassica napus HOM05D001825 ORTHO05D002336 5.9e-13 79.0 43 90.7
C07p34700 Brassica napus HOM05D001825 ORTHO05D002336 5.9e-13 79.0 43 90.7
C07p34740 Brassica napus HOM05D001825 ORTHO05D002336 5.9e-13 79.0 43 90.7
C07p34760 Brassica napus HOM05D001825 ORTHO05D002336 5.9e-13 79.0 43 90.7
C09p32040 Brassica napus HOM05D001825 ORTHO05D010533 5.9e-13 79.0 43 90.7
BraA06t27163Z Brassica rapa HOM05D001825 ORTHO05D002336 5.9e-13 79.0 43 90.7
BcaC03g16707 Brassica carinata HOM05D001825 ORTHO05D010533 1.3e-12 77.8 48 70.8
arahy.Tifrunner.gnm1.ann1.9V29BW Arachis hypogaea HOM05D001825 ORTHO05D002336 1.7e-12 77.4 65 64.6
A09p25040 Brassica napus HOM05D001825 ORTHO05D010533 1.7e-12 77.4 39 87.2
Hma1.2p1_0030F.1_g018230 Hydrangea macrophylla HOM05D001825 ORTHO05D002336 8.5e-12 75.1 47 74.5
Gorai.013G081300 Gossypium raimondii HOM05D001825 ORTHO05D002336 7.2e-11 72.0 44 81.8
A08p27000 Brassica napus HOM05D001825 ORTHO05D002336 1.6e-10 70.9 43 83.7
BraA08t34646Z Brassica rapa HOM05D001825 ORTHO05D002336 1.6e-10 70.9 43 83.7
A07p12640 Brassica napus HOM05D001825 ORTHO05D002336 2.1e-10 70.5 43 81.4
A09p39520 Brassica napus HOM05D001825 ORTHO05D004551 2.1e-10 70.5 43 81.4
BraA07t29042Z Brassica rapa HOM05D001825 ORTHO05D002336 2.1e-10 70.5 43 81.4
BraA09t39448Z Brassica rapa HOM05D001825 ORTHO05D002336 2.1e-10 70.5 43 81.4
DCAR_023674 Daucus carota HOM05D001825 ORTHO05D002336 1.8e-09 67.4 145 36.6
Carub.0135s0002 Capsella rubella HOM05D001825 ORTHO05D002336 4.0e-09 66.2 51 64.7
AUR62035258 Chenopodium quinoa HOM05D001825 ORTHO05D002336 4.0e-09 66.2 35 80.0
Ciclev10019417m.g Citrus clementina HOM05D001825 ORTHO05D002336 5.2e-09 65.9 44 72.7
MCO15G645 Micromonas commoda HOM05D001825 ORTHO05D002336 5.2e-09 65.9 76 43.4
QL10p025031 Quercus lobata HOM05D001825 ORTHO05D002336 8.8e-09 65.1 36 80.6
CDE12G0569 Ceratophyllum demersum HOM05D001825 ORTHO05D010533 1.2e-08 64.7 38 81.6
A07p43620 Brassica napus HOM05D001825 ORTHO05D010533 1.5e-08 64.3 32 87.5
Lj3C1018T2 Lonicera japonica HOM05D001825 ORTHO05D002336 2.0e-08 63.9 65 50.8
Ah.02g115330 Amaranthus hybridus HOM05D001825 ORTHO05D002336 3.3e-08 63.2 32 84.4
BcaC04g19385 Brassica carinata HOM05D001825 ORTHO05D010533 3.3e-08 63.2 43 69.8
A03p65620 Brassica napus HOM05D001825 ORTHO05D010533 3.3e-08 63.2 32 84.4
C05p24940 Brassica napus HOM05D001825 ORTHO05D004551 3.3e-08 63.2 32 84.4
C09p56270 Brassica napus HOM05D001825 ORTHO05D010533 3.3e-08 63.2 43 69.8
BolC9t58496H Brassica oleracea HOM05D001825 ORTHO05D010533 3.3e-08 63.2 43 69.8
BraA03t15615Z Brassica rapa HOM05D001825 ORTHO05D010533 3.3e-08 63.2 32 84.4
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 5.7e-08 62.4 31 87.1
BraA03t12003Z Brassica rapa HOM05D001825 ORTHO05D010533 5.7e-08 62.4 31 87.1
SEGI_11745 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 9.7e-08 61.6 72 47.2
Duzib205G0830 Durio zibethinus HOM05D001825 ORTHO05D002336 3.7e-07 59.7 27 92.6
Solyc05g045950.3 Solanum lycopersicum HOM05D001825 ORTHO05D010533 4.8e-07 59.3 31 80.6
MD01G1132700 Malus domestica HOM05D001825 ORTHO05D010533 8.2e-07 58.5 82 40.2
Haze_17456 Corylus avellana HOM05D001825 ORTHO05D002336 1.1e-06 58.2 67 56.7
Oeu010777.1 Olea europaea HOM05D001825 ORTHO05D002336 1.8e-06 57.4 85 42.4
PRCOL_00003010 Prasinoderma coloniale HOM05D001825 ORTHO05D002336 1.8e-06 57.4 44 50.0
MD09G1265800 Malus domestica HOM05D001825 ORTHO05D010533 3.1e-06 56.6 27 92.6
Nitab4.5_0002869g0050 Nicotiana tabacum HOM05D001825 ORTHO05D010533 3.1e-06 56.6 135 31.1
C02p45380 Brassica napus HOM05D001825 ORTHO05D010533 7.0e-06 55.5 48 60.4


User provided reference genes

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