Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0382401 Helianthus annuus HOM05D004046 ORTHO05D004716 2.4e-53 211.8 101 100.0
HanXRQChr05g0144301 Helianthus annuus HOM05D004046 ORTHO05D004716 1.1e-37 159.8 83 92.8
HanXRQChr14g0432401 Helianthus annuus HOM05D004046 ORTHO05D004716 1.1e-37 159.8 83 92.8
HanXRQChr01g0011571 Helianthus annuus HOM05D004046 ORTHO05D004716 2.4e-37 158.7 83 94.0
ECA236G0372 Erigeron canadensis HOM05D004046 ORTHO05D004716 9.0e-37 156.8 83 90.4
Lsat_1_v5_gn_4_12481 Lactuca sativa HOM05D004046 ORTHO05D004716 2.0e-36 155.6 83 90.4
Gohir.A11G326900 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.3e-35 152.9 83 88.0
Gorai.007G376100 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.3e-35 152.9 83 88.0
Rhsim11G0098900 Rhododendron simsii HOM05D004046 ORTHO05D004716 1.3e-35 152.9 83 88.0
Actinidia16884 Actinidia chinensis HOM05D004046 ORTHO05D004716 1.7e-35 152.5 83 89.2
Actinidia27689 Actinidia chinensis HOM05D004046 ORTHO05D004716 1.7e-35 152.5 83 89.2
Dinv24482 Davidia involucrata HOM05D004046 ORTHO05D004716 2.2e-35 152.1 83 88.0
SGA_v2.0_scaffold4G01982 Striga asiatica HOM05D004046 ORTHO05D004716 2.2e-35 152.1 83 88.0
THA.LOC104823263 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 2.2e-35 152.1 83 86.7
THA.LOC104827016 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 2.2e-35 152.1 83 86.7
MSTRG.16415 Avicennia marina HOM05D004046 ORTHO05D004716 2.9e-35 151.8 83 86.7
ClCG02G014740 Citrullus lanatus HOM05D004046 ORTHO05D004716 2.9e-35 151.8 83 88.0
unitig_699.g19663 Utricularia gibba HOM05D004046 ORTHO05D004716 2.9e-35 151.8 83 86.7
CiPaw.07G032600 Carya illinoinensis HOM05D004046 ORTHO05D004716 3.8e-35 151.4 83 86.7
MELO3C004163.2 Cucumis melo HOM05D004046 ORTHO05D004716 3.8e-35 151.4 83 86.7
CsaV3_2G007260 Cucumis sativus L. HOM05D000028 ORTHO05D004716 3.8e-35 151.4 83 86.7
QL02p093330 Quercus lobata HOM05D004046 ORTHO05D004716 3.8e-35 151.4 83 86.7
QL03p017764 Quercus lobata HOM05D004046 ORTHO05D004716 3.8e-35 151.4 83 86.7
CiPaw.07G032200 Carya illinoinensis HOM05D004046 ORTHO05D004716 5.0e-35 151.0 83 86.7
CiPaw.08G153400 Carya illinoinensis HOM05D004046 ORTHO05D004716 5.0e-35 151.0 83 86.7
Peaxi162Scf00357g00620 Petunia axillaris HOM05D004046 ORTHO05D004716 5.0e-35 151.0 83 86.7
Duzib106G1933 Durio zibethinus HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 86.7
Gohir.D09G151200 Gossypium hirsutum HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 86.7
Gorai.006G172500 Gossypium raimondii HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 86.7
RcHm_v2.0_Chr3g0457701 Rosa chinensis HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 85.5
Hund21854 Selenicereus undatus HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 85.5
Sc09g0002540 Simmondsia chinensis HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 85.5
Thecc.05G038900 Theobroma cacao HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 86.7
GSVIVG01031287001 Vitis vinifera HOM05D004046 ORTHO05D004716 6.5e-35 150.6 83 88.0
Ah.15g096470 Amaranthus hybridus HOM05D004046 ORTHO05D004716 8.4e-35 150.2 83 86.7
COL.COLO4_14791 Corchorus olitorius HOM05D004046 ORTHO05D004716 8.4e-35 150.2 83 86.7
Sed0010909 Sechium edule HOM05D004046 ORTHO05D004716 8.4e-35 150.2 83 84.3
Haze_04031 Corylus avellana HOM05D004046 ORTHO05D004716 1.1e-34 149.8 83 85.5
Nn4g23875 Nelumbo nucifera HOM05D004046 ORTHO05D004716 1.1e-34 149.8 83 86.7
vmacro01590 Vaccinium macrocarpon HOM05D004046 ORTHO05D004716 1.1e-34 149.8 76 93.4
CSS0016663 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 85.5
CSS0022787 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 85.5
CSS0043761 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 85.5
Cfa006729 Carpinus fangiana HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 85.5
MBI18_g27392_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 85.5
Manes.09G093100 Manihot esculenta HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 86.7
SalBow7G4079 Salvia bowleyana HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 85.5
TWI53G0737 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 1.4e-34 149.4 83 86.7
Cc02_g35390 Coffea canephora HOM05D004046 ORTHO05D004716 1.9e-34 149.1 83 85.5
FvH4_6g08030 Fragaria vesca HOM05D004046 ORTHO05D004716 1.9e-34 149.1 83 84.3
FAN02G0090 Fragaria x ananassa HOM05D004046 ORTHO05D004716 1.9e-34 149.1 83 84.3
FAN05G0549 Fragaria x ananassa HOM05D004046 ORTHO05D004716 1.9e-34 149.1 83 84.3
Hma1.2p1_0052F.1_g030600 Hydrangea macrophylla HOM05D004046 ORTHO05D004716 1.9e-34 149.1 83 88.0
Prupe.6G309100 Prunus persica HOM05D004046 ORTHO05D004716 1.9e-34 149.1 83 85.5
MSTRG.19613 Avicennia marina HOM05D004046 ORTHO05D004716 2.5e-34 148.7 83 84.3
Cpa.g.sc188.2 Carica papaya HOM05D004046 ORTHO05D004716 2.5e-34 148.7 83 85.5
Lalb_Chr18g0054271 Lupinus albus HOM05D004046 ORTHO05D004716 2.5e-34 148.7 83 83.1
Nitab4.5_0003044g0050 Nicotiana tabacum HOM05D004046 ORTHO05D004716 2.5e-34 148.7 83 84.3
Nitab4.5_0011298g0030 Nicotiana tabacum HOM05D004046 ORTHO05D004716 2.5e-34 148.7 83 84.3
Ciclev10012951m.g Citrus clementina HOM05D004046 ORTHO05D004716 3.2e-34 148.3 83 85.5
MD14G1013000 Malus domestica HOM05D004046 ORTHO05D004716 3.2e-34 148.3 83 84.3
Medtr8g103680 Medicago truncatula HOM05D004046 ORTHO05D004716 3.2e-34 148.3 83 81.9
Nitab4.5_0022238g0010 Nicotiana tabacum HOM05D004046 ORTHO05D004716 3.2e-34 148.3 83 85.5
Aqoxy3G02119 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 4.2e-34 147.9 82 86.6
AUR62000434 Chenopodium quinoa HOM05D004046 ORTHO05D004716 4.2e-34 147.9 83 83.1
AUR62006779 Chenopodium quinoa HOM05D004046 ORTHO05D004716 4.2e-34 147.9 83 83.1
Dinv30922 Davidia involucrata HOM05D004046 ORTHO05D004716 4.2e-34 147.9 83 86.7
FAN14G5596 Fragaria x ananassa HOM05D004046 ORTHO05D004716 4.2e-34 147.9 83 84.3
ATR0564G175 Amborella trichopoda HOM05D004046 ORTHO05D004716 5.5e-34 147.5 83 85.5
CANSAT54G1174 Cannabis sativa HOM05D004046 ORTHO05D004716 5.5e-34 147.5 83 84.3
MBI19_g32693_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 5.5e-34 147.5 83 84.3
Medtr5g075330 Medicago truncatula HOM05D004046 ORTHO05D004716 5.5e-34 147.5 83 83.1
Oeu024971.3 Olea europaea HOM05D004046 ORTHO05D004716 5.5e-34 147.5 76 90.8
Psat2g051160 Pisum sativum HOM05D000114 ORTHO05D000075 5.5e-34 147.5 83 83.1
Potri.009G069800 Populus trichocarpa HOM05D004046 ORTHO05D004716 5.5e-34 147.5 83 85.5
TPR.G22016 Trifolium pratense HOM05D004046 ORTHO05D004716 5.5e-34 147.5 83 83.1
TWI74G0996 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 5.5e-34 147.5 83 85.5
Aa31LG1G22470 Aethionema arabicum HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 84.3
AL6G11540 Arabidopsis lyrata HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 84.3
AT5G02280 Arabidopsis thaliana HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 84.3
CARHR211090 Cardamine hirsuta HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 84.3
Glyma.18G053900 Glycine max HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 83.1
Lj3g0003008 Lotus japonicus HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 81.9
PSO541G2302 Papaver somniferum HOM05D004046 ORTHO05D004716 7.2e-34 147.1 82 85.4
PSO675G4097 Papaver somniferum HOM05D004046 ORTHO05D004716 7.2e-34 147.1 82 85.4
PSO724G1081 Papaver somniferum HOM05D004046 ORTHO05D004716 7.2e-34 147.1 82 85.4
PSO729G0122 Papaver somniferum HOM05D004046 ORTHO05D004716 7.2e-34 147.1 82 85.4
Phvul.006G077300 Phaseolus vulgaris HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 83.1
Sp6g40170 Schrenkiella parvula HOM05D004046 ORTHO05D004716 7.2e-34 147.1 83 84.3
CSS0015916 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 9.3e-34 146.7 83 84.3
Migut.B00856 Erythranthe guttata HOM05D004046 ORTHO05D004716 9.3e-34 146.7 83 83.1
Nn6g34665 Nelumbo nucifera HOM05D004046 ORTHO05D004716 9.3e-34 146.7 76 92.1
TPR.G18674 Trifolium pratense HOM05D004046 ORTHO05D004716 9.3e-34 146.7 83 83.1
arahy.Tifrunner.gnm1.ann1.9T0Q39 Arachis hypogaea HOM05D004046 ORTHO05D004716 1.2e-33 146.4 82 82.9
arahy.Tifrunner.gnm1.ann1.D04R4W Arachis hypogaea HOM05D004046 ORTHO05D004716 1.2e-33 146.4 82 82.9
Glyma.11G160100 Glycine max HOM05D004046 ORTHO05D004716 1.2e-33 146.4 83 83.1
VMungo0540G2486 Vigna mungo HOM05D004046 ORTHO05D004716 1.2e-33 146.4 83 83.1
Aqoxy3G03929 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 1.6e-33 146.0 82 85.4
BcaB01g06156 Brassica carinata HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
BcaB01g06221 Brassica carinata HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
A03p00610 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
A10p33340 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
C03p00880 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
C09p74250 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
BolC9t60158H Brassica oleracea HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
BraA10t45365Z Brassica rapa HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
Carub.0006s0112 Capsella rubella HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
CAN.G1076.45 Capsicum annuum HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
DCAR_003336 Daucus carota HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 81.9
Lj6g0018597 Lotus japonicus HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 80.7
Solyc01g100840.3 Solanum lycopersicum HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
Sopen01g044340 Solanum pennellii HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
PGSC0003DMG400002754 Solanum tuberosum HOM05D004046 ORTHO05D004716 1.6e-33 146.0 83 83.1
EL10Ac4g09510 Beta vulgaris HOM05D004046 ORTHO05D004716 2.1e-33 145.6 83 81.9
Manes.08G080100 Manihot esculenta HOM05D004046 ORTHO05D004716 2.1e-33 145.6 83 84.3
Thhalv10022901m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 2.7e-33 145.2 82 84.1
TAR362G0840 Trochodendron aralioides HOM05D004046 ORTHO05D004716 4.6e-33 144.4 83 84.3
Glyma.09G274900 Glycine max HOM05D004046 ORTHO05D004716 6.1e-33 144.1 83 81.9
Sabra09G0052700 Salix brachista HOM05D004046 ORTHO05D004716 6.1e-33 144.1 76 90.8
Ca_05705_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 7.9e-33 143.7 83 80.7
Ca_30743_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 7.9e-33 143.7 83 80.7
MD12G1203200 Malus domestica HOM05D004046 ORTHO05D004716 1.0e-32 143.3 83 80.7
EL10Ac1g01013 Beta vulgaris HOM05D004046 ORTHO05D004716 1.3e-32 142.9 83 80.7
Duzib093G2058 Durio zibethinus HOM05D004046 ORTHO05D004716 1.8e-32 142.5 83 81.9
PGR031G1682 Punica granatum HOM05D004046 ORTHO05D004716 3.9e-32 141.4 82 81.7
DCAR_022169 Daucus carota HOM05D004046 ORTHO05D004716 5.1e-32 141.0 83 79.5
SEGI_05351 Sequoiadendron giganteum HOM05D004046 ORTHO05D004716 5.1e-32 141.0 83 80.7
PGR083G0204 Punica granatum HOM05D004046 ORTHO05D004716 1.1e-31 139.8 82 81.7
AagrBONN_evm.TU.Sc2ySwM_228.3974 Anthoceros agrestis HOM05D004046 ORTHO05D004716 1.5e-31 139.4 82 76.8
Mapoly0130s0031 Marchantia polymorpha HOM05D004046 ORTHO05D004716 1.5e-31 139.4 82 79.3
Pp3c15_20530 Physcomitrium patens HOM05D004046 ORTHO05D004716 1.9e-31 139.0 81 76.5
CDE08G1157 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 2.5e-31 138.7 82 81.7
Zm00001eb376880 Zea mays HOM05D004046 ORTHO05D004716 4.3e-31 137.9 83 77.1
Gohir.A09G155700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 5.7e-31 137.5 83 83.1
Os07g0454700 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 2.2e-30 135.6 83 77.1
Os06g0151300 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 2.8e-30 135.2 82 78.0
Pp3c9_17970 Physcomitrium patens HOM05D004046 ORTHO05D004716 2.8e-30 135.2 75 78.7
CSS0046633 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.1e-29 133.3 76 82.9
SMO270G0009 Selaginella moellendorffii HOM05D004046 ORTHO05D004716 1.1e-29 133.3 83 73.5
Cre02.g077500 Chlamydomonas reinhardtii HOM05D004046 ORTHO05D004716 2.2e-27 125.6 82 68.3
CBR_g30870 Chara braunii HOM05D004046 ORTHO05D004716 1.2e-25 119.8 83 60.2
Eucgr.H04106 Eucalyptus grandis HOM05D004046 ORTHO05D004716 2.0e-23 112.5 64 81.2
Gorai.003G067000 Gossypium raimondii HOM05D004046 ORTHO05D004716 6.3e-22 107.5 67 74.6
Thhalv10015468m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 5.9e-20 100.9 56 82.1
DCAR_022168 Daucus carota HOM05D004046 ORTHO05D004716 1.7e-19 99.4 56 80.4
CDE02G1414 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 3.8e-19 98.2 56 82.1
PRCOL_00000225 Prasinoderma coloniale HOM05D004046 ORTHO05D004716 6.5e-19 97.4 82 51.2
Gohir.D07G166050 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.4e-18 96.3 56 80.4
Gorai.N004900 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.4e-18 96.3 56 80.4
Gohir.D11G230500 Gossypium hirsutum HOM05D004046 ORTHO05D004716 3.2e-18 95.1 56 80.4
Peaxi162Scf00672g00088 Petunia axillaris HOM05D004046 ORTHO05D004716 1.2e-17 93.2 56 75.0
Gohir.D13G093250 Gossypium hirsutum HOM05D004046 ORTHO05D004716 3.6e-17 91.7 56 78.6
Gorai.010G140600 Gossypium raimondii HOM05D004046 ORTHO05D004716 3.9e-16 88.2 49 85.7
GSVIVG01031279001 Vitis vinifera HOM05D004046 ORTHO05D004716 4.1e-13 78.2 45 80.0
GSVIVG01031275001 Vitis vinifera HOM05D004046 ORTHO05D004716 1.2e-12 76.6 44 79.5
GSVIVG01031283001 Vitis vinifera HOM05D004046 ORTHO05D004716 1.2e-12 76.6 44 79.5
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 5.2e-08 61.2 105 44.8
Gorai.004G096700 Gossypium raimondii HOM05D004046 ORTHO05D004716 3.7e-06 55.1 35 74.3
Gorai.007G198600 Gossypium raimondii HOM05D004046 ORTHO05D004716 4.8e-06 54.7 39 66.7


User provided reference genes

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