Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 2.6e-68 261.9 130 100.0
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 1.2e-57 226.5 130 86.9
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 8.6e-56 220.3 131 82.4
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 2.8e-51 205.3 130 79.2
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 2.7e-49 198.7 130 76.9
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 3.9e-48 194.9 131 77.1
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 6.6e-48 194.1 130 76.2
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 2.5e-47 192.2 130 74.6
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 4.3e-47 191.4 130 73.1
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 7.3e-47 190.7 130 71.5
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 9.5e-47 190.3 130 73.8
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 2.1e-46 189.1 130 72.3
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 2.1e-46 189.1 129 72.1
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 2.8e-46 188.7 130 73.1
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.8e-46 188.7 131 74.8
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 3.6e-46 188.3 136 68.4
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 3.6e-46 188.3 131 73.3
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 8.0e-46 187.2 131 72.5
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 1.0e-45 186.8 130 70.8
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 1.4e-45 186.4 130 72.3
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 1.8e-45 186.0 130 70.8
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 4.0e-45 184.9 130 71.5
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 4.0e-45 184.9 130 71.5
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 5.2e-45 184.5 130 72.3
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 5.2e-45 184.5 130 73.1
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 5.2e-45 184.5 126 71.4
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 5.2e-45 184.5 130 70.0
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 8.9e-45 183.7 126 73.8
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.2e-44 183.3 130 70.8
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 1.5e-44 183.0 130 73.1
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 2.0e-44 182.6 133 70.7
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 2.0e-44 182.6 130 70.8
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 3.4e-44 181.8 130 71.5
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 4.4e-44 181.4 130 70.0
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 5.8e-44 181.0 130 71.5
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 5.8e-44 181.0 130 70.8
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 7.5e-44 180.6 130 68.5
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 9.8e-44 180.3 130 71.5
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 1.3e-43 179.9 134 70.9
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 1.7e-43 179.5 130 71.5
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 1.7e-43 179.5 130 71.5
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 1.7e-43 179.5 128 72.7
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 2.2e-43 179.1 130 69.2
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 2.9e-43 178.7 126 73.8
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 2.9e-43 178.7 130 67.7
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 3.7e-43 178.3 126 73.8
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 4.9e-43 177.9 128 72.7
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 6.4e-43 177.6 132 66.7
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 6.4e-43 177.6 125 75.2
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 6.4e-43 177.6 118 74.6
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 1.1e-42 176.8 130 70.0
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 1.1e-42 176.8 130 70.0
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 1.9e-42 176.0 128 71.9
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.9e-42 176.0 125 73.6
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 2.4e-42 175.6 125 73.6
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 2.4e-42 175.6 126 71.4
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 2.4e-42 175.6 126 71.4
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 3.2e-42 175.3 127 71.7
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 5.4e-42 174.5 130 67.7
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 5.4e-42 174.5 113 75.2
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 5.4e-42 174.5 128 68.8
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 7.0e-42 174.1 125 70.4
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 9.2e-42 173.7 130 66.9
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.2e-41 173.3 125 70.4
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 2.0e-41 172.6 120 75.8
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 4.6e-41 171.4 94 79.8
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 6.0e-41 171.0 90 88.9
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 3.0e-40 168.7 121 72.7
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 3.0e-40 168.7 96 82.3
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 3.9e-40 168.3 125 69.6
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 1.1e-39 166.8 122 71.3
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 1.1e-39 166.8 122 71.3
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.1e-39 166.8 132 65.2
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 1.2e-38 163.3 90 84.4
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 1.2e-38 163.3 135 63.0
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 1.4e-37 159.8 120 65.8
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.8e-37 159.5 126 65.9
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 2.3e-37 159.1 89 84.3
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 5.2e-37 157.9 102 74.5
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 6.8e-37 157.5 85 85.9
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 2.6e-36 155.6 125 64.0
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 4.4e-36 154.8 125 64.0
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 4.4e-36 154.8 85 83.5
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 2.9e-35 152.1 130 63.8
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 3.9e-32 141.7 157 51.0
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 3.6e-30 135.2 91 68.1
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 4.0e-29 131.7 114 56.1
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 1.5e-28 129.8 85 71.8
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 1.1e-26 123.6 96 66.7
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 2.3e-24 115.9 130 52.3
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 8.6e-24 114.0 94 67.0
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 1.2e-22 110.2 92 63.0
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 8.9e-21 104.0 96 61.5
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 4.2e-18 95.1 85 60.0
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 6.0e-17 91.3 84 61.9
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.3e-16 89.4 84 60.7
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 8.7e-16 87.4 89 55.1
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 1.5e-15 86.7 80 55.0
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 1.5e-15 86.7 81 60.5
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 2.5e-15 85.9 85 54.1
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 3.3e-15 85.5 82 57.3
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 4.3e-15 85.1 82 61.0
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 1.6e-14 83.2 41 85.4
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 9.0e-13 77.4 62 54.8
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 5.8e-12 74.7 49 71.4
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 1.3e-08 63.5 92 46.7
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 5.1e-08 61.6 42 66.7


User provided reference genes

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