Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 3.9e-165 584.7 292 100.0
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.9e-136 488.8 289 81.0
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.8e-125 453.0 241 96.3
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.2e-118 430.3 293 71.7
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 3.9e-117 425.2 292 72.3
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 2.6e-116 422.5 295 69.8
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.3e-116 421.8 290 70.3
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 5.7e-116 421.4 291 70.1
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.3e-115 420.2 292 69.9
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 1.7e-115 419.9 293 70.3
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 3.7e-115 418.7 292 70.9
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 4.8e-115 418.3 292 70.9
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 8.2e-115 417.5 294 69.4
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.2e-115 417.5 294 69.7
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 4.1e-114 415.2 291 70.1
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 2.0e-113 412.9 291 69.4
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 4.5e-113 411.8 293 69.3
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 7.7e-113 411.0 292 70.5
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.0e-112 410.6 290 70.3
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.3e-112 410.2 291 69.1
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.7e-112 409.8 291 69.1
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 2.2e-112 409.5 291 68.7
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.5e-112 407.9 291 68.4
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 6.5e-112 407.9 295 67.8
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.9e-111 406.4 293 69.3
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 5.5e-111 404.8 293 68.3
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 5.5e-111 404.8 288 67.7
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 5.5e-111 404.8 293 66.9
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 7.2e-111 404.4 293 69.3
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.0e-109 400.6 293 67.9
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.8e-109 399.8 310 66.5
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 3.0e-109 399.1 292 65.4
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 3.9e-109 398.7 293 66.9
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 5.2e-109 398.3 297 67.3
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-108 396.7 295 68.1
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 9.7e-108 394.0 293 65.5
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.2e-107 392.9 293 65.2
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.8e-107 392.5 309 64.4
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 4.8e-107 391.7 295 67.8
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.4e-106 390.2 293 64.5
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 4.1e-106 388.7 295 66.1
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.0e-105 386.3 294 65.3
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 3.5e-105 385.6 293 67.6
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 7.7e-105 384.4 318 62.3
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 1.7e-104 383.3 297 65.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.9e-103 379.8 291 64.9
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 2.1e-102 376.3 294 63.6
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.6e-102 375.6 289 64.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.8e-101 373.2 294 62.6
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.8e-101 373.2 294 62.6
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.8e-101 373.2 292 64.4
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 2.3e-101 372.9 299 65.6
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 3.0e-101 372.5 293 62.5
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.7e-99 366.7 293 61.4
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.7e-99 366.7 289 63.0
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 2.2e-99 366.3 293 61.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 2.8e-99 365.9 291 63.6
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 4.8e-99 365.2 234 78.2
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 5.3e-98 361.7 296 62.2
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 5.3e-98 361.7 291 61.9
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 7.0e-98 361.3 293 61.8
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 7.0e-98 361.3 268 69.4
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.7e-97 359.4 361 53.5
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 3.5e-97 359.0 294 61.2
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 5.9e-97 358.2 291 62.2
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 5.9e-97 358.2 276 67.0
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.3e-96 357.1 291 63.9
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 2.2e-96 356.3 309 57.6
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 5.0e-96 355.1 287 58.2
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 8.5e-96 354.4 294 57.8
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 4.4e-92 342.0 326 55.2
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 5.7e-92 341.7 294 58.5
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.8e-91 339.3 299 61.2
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 3.7e-91 339.0 239 71.1
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 8.3e-91 337.8 257 65.0
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.9e-88 329.3 266 61.3
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 3.8e-88 328.9 289 56.7
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 8.5e-88 327.8 294 56.1
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.5e-87 327.0 312 57.1
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 5.5e-87 325.1 293 57.7
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 6.8e-85 318.2 258 61.2
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 9.8e-84 314.3 271 58.3
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.3e-83 313.9 229 67.2
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 4.3e-79 298.9 283 55.5
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.3e-79 298.1 201 71.6
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 9.5e-79 297.7 229 68.1
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 6.4e-75 285.0 208 68.8
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.1e-74 284.3 201 69.2
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 7.8e-73 278.1 292 49.0
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 6.6e-72 275.0 257 55.3
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 8.6e-72 274.6 303 45.9
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 2.5e-71 273.1 200 65.5
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 6.2e-70 268.5 288 46.2
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 2.3e-69 266.5 293 45.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.7e-67 260.4 291 50.9
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 9.2e-66 254.6 286 50.3
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.9e-63 246.9 175 66.9
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 7.3e-63 245.0 186 65.6
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.8e-62 243.0 198 61.1
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 1.5e-55 220.7 207 54.1
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 5.6e-55 218.8 190 61.1
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.0e-52 210.3 210 51.9
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.2e-49 201.1 173 59.5
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.7e-48 197.2 248 41.5
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.1e-47 194.5 185 54.1
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.3e-40 170.2 137 63.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.9e-40 169.5 307 34.5
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 3.9e-40 169.5 130 63.8
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.0e-32 144.8 95 72.6
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 2.3e-32 143.7 96 72.9
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.9e-31 140.6 98 67.3
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 3.7e-30 136.3 104 64.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 8.1e-30 135.2 146 54.1
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.1e-29 134.8 126 56.3
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 2.4e-29 133.7 98 63.3
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 3.9e-24 116.3 81 66.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 8.7e-24 115.2 120 50.0
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.1e-23 114.8 109 57.8
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 2.5e-23 113.6 171 35.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 8.2e-22 108.6 99 55.6
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.4e-21 107.8 81 60.5
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 1.4e-21 107.8 76 65.8
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 3.8e-19 99.8 67 67.2
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 6.5e-19 99.0 95 56.8
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.4e-18 97.8 98 56.1
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 3.5e-17 93.2 176 30.1
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-16 89.7 55 69.1
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 9.7e-15 85.1 92 48.9
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.3e-14 84.7 75 61.3
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 2.4e-13 80.5 55 72.7
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 3.1e-13 80.1 53 64.2
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.9e-12 75.9 66 60.6


User provided reference genes

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