Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0111761 Helianthus annuus HOM05D004313 ORTHO05D005036 1.6e-43 179.1 94 100.0
HanXRQChr12g0381491 Helianthus annuus HOM05D004313 ORTHO05D005036 1.6e-43 179.1 94 100.0
HanXRQChr15g0485871 Helianthus annuus HOM05D004313 ORTHO05D005036 1.1e-25 119.8 92 75.0
HanXRQChr09g0243671 Helianthus annuus HOM05D004313 ORTHO05D005036 8.4e-21 103.6 84 71.4
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 1.8e-15 85.9 62 71.0
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 2.4e-15 85.5 62 71.0
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 5.3e-15 84.3 62 71.0
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 5.3e-15 84.3 62 71.0
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 5.3e-15 84.3 62 71.0
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 5.3e-15 84.3 62 71.0
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 5.3e-15 84.3 62 71.0
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 6.9e-15 84.0 62 69.4
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 9.0e-15 83.6 62 69.4
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 9.0e-15 83.6 62 71.0
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 9.0e-15 83.6 62 71.0
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 1.2e-14 83.2 63 69.8
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 1.2e-14 83.2 62 71.0
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 2.0e-14 82.4 62 69.4
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.0e-14 82.4 62 66.1
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 2.6e-14 82.0 62 67.7
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.6e-14 82.0 62 66.1
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 3.4e-14 81.6 62 71.0
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 3.4e-14 81.6 62 67.7
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 3.4e-14 81.6 62 69.4
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 4.5e-14 81.3 56 76.8
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 4.5e-14 81.3 62 67.7
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 5.9e-14 80.9 62 67.7
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 7.7e-14 80.5 62 67.7
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.7e-14 80.5 62 67.7
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.7e-14 80.5 62 67.7
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.7e-14 80.5 62 67.7
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 7.7e-14 80.5 62 67.7
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 7.7e-14 80.5 61 68.9
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 7.7e-14 80.5 62 66.1
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 7.7e-14 80.5 62 67.7
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 7.7e-14 80.5 64 67.2
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 1.0e-13 80.1 62 66.1
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.0e-13 80.1 62 67.7
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 1.0e-13 80.1 62 67.7
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 1.3e-13 79.7 62 66.1
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 1.3e-13 79.7 62 67.7
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 1.7e-13 79.3 62 66.1
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 1.7e-13 79.3 62 67.7
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 1.7e-13 79.3 61 68.9
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 1.7e-13 79.3 56 75.0
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.7e-13 79.3 62 67.7
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 2.2e-13 79.0 56 76.8
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 2.9e-13 78.6 62 66.1
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.9e-13 78.6 64 65.6
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 2.9e-13 78.6 62 64.5
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 2.9e-13 78.6 56 75.0
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 2.9e-13 78.6 62 66.1
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 2.9e-13 78.6 62 66.1
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 2.9e-13 78.6 62 66.1
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 2.9e-13 78.6 62 66.1
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 2.9e-13 78.6 61 65.6
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 2.9e-13 78.6 56 69.6
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 3.8e-13 78.2 56 73.2
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 3.8e-13 78.2 56 73.2
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 3.8e-13 78.2 62 66.1
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 3.8e-13 78.2 55 74.5
Cpa.g.sc391.2 Carica papaya HOM05D004313 ORTHO05D005036 5.0e-13 77.8 62 64.5
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 5.0e-13 77.8 62 64.5
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 6.5e-13 77.4 56 71.4
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 6.5e-13 77.4 62 67.7
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 6.5e-13 77.4 62 66.1
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 6.5e-13 77.4 62 64.5
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 8.5e-13 77.0 66 62.1
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 8.5e-13 77.0 56 73.2
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 8.5e-13 77.0 56 71.4
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 1.1e-12 76.6 54 74.1
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 1.1e-12 76.6 56 71.4
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 1.1e-12 76.6 62 62.9
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.1e-12 76.6 56 73.2
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.4e-12 76.3 55 72.7
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.9e-12 75.9 61 62.3
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.9e-12 75.9 93 49.5
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 1.9e-12 75.9 62 61.3
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 1.9e-12 75.9 62 61.3
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 2.5e-12 75.5 56 67.9
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 3.2e-12 75.1 95 48.4
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 4.2e-12 74.7 62 61.3
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 5.5e-12 74.3 61 60.7
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 5.5e-12 74.3 60 66.7
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 7.2e-12 73.9 56 67.9
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 7.2e-12 73.9 56 67.9
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 9.4e-12 73.6 55 69.1
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 2.1e-11 72.4 56 67.9
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 2.1e-11 72.4 56 66.1
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 2.7e-11 72.0 55 67.3
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 2.7e-11 72.0 56 66.1
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 2.7e-11 72.0 56 67.9
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 2.7e-11 72.0 56 67.9
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 3.6e-11 71.6 56 64.3
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 3.6e-11 71.6 56 64.3
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 3.6e-11 71.6 56 62.5
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 4.6e-11 71.2 56 69.6
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 4.6e-11 71.2 60 60.0
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 7.9e-11 70.5 56 62.5
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.4e-10 69.7 56 62.5
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 1.8e-10 69.3 56 64.3
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 2.3e-10 68.9 56 62.5
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 3.9e-10 68.2 48 72.9
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 5.1e-10 67.8 47 74.5
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 1.1e-09 66.6 48 70.8
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 3.3e-09 65.1 83 48.2
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 1.8e-07 59.3 67 50.7
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 1.8e-07 59.3 56 46.4
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 1.2e-06 56.6 62 46.8


User provided reference genes

Program Settings