Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 1.1e-50 203.0 104 100.0
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 7.9e-44 180.3 98 89.8
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 6.6e-43 177.2 98 87.8
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 2.5e-21 105.5 99 54.5
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 3.9e-19 98.2 99 54.5
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 7.4e-18 94.0 100 51.0
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 7.4e-18 94.0 100 51.0
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 1.3e-17 93.2 98 53.1
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 1.6e-17 92.8 99 48.5
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 2.2e-17 92.4 101 51.5
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 4.8e-17 91.3 100 49.0
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 8.2e-17 90.5 99 48.5
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 1.1e-16 90.1 99 51.5
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 1.4e-16 89.7 99 48.5
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 1.4e-16 89.7 100 44.0
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 1.4e-16 89.7 106 48.1
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 1.8e-16 89.4 99 45.5
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 2.4e-16 89.0 98 49.0
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 2.4e-16 89.0 101 48.5
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 3.1e-16 88.6 100 50.0
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 4.1e-16 88.2 97 47.4
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 4.1e-16 88.2 97 47.4
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 5.3e-16 87.8 99 45.5
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 5.3e-16 87.8 98 49.0
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 5.3e-16 87.8 100 49.0
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 5.3e-16 87.8 100 49.0
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 1.2e-15 86.7 101 50.5
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.2e-15 86.7 99 50.5
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 1.5e-15 86.3 99 46.5
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 2.0e-15 85.9 99 46.5
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 3.4e-15 85.1 99 48.5
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 5.9e-15 84.3 98 48.0
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 5.9e-15 84.3 98 49.0
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 5.9e-15 84.3 99 43.4
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 5.9e-15 84.3 102 46.1
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 7.7e-15 84.0 101 47.5
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 1.3e-14 83.2 101 48.5
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 2.9e-14 82.0 99 42.4
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.9e-14 82.0 99 47.5
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 2.9e-14 82.0 99 47.5
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 2.9e-14 82.0 104 49.0
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 3.8e-14 81.6 97 44.3
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 5.0e-14 81.3 100 46.0
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 5.0e-14 81.3 98 42.9
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 5.0e-14 81.3 99 48.5
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 5.0e-14 81.3 100 43.0
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 5.0e-14 81.3 98 48.0
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 6.5e-14 80.9 104 45.2
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 1.4e-13 79.7 100 48.0
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 1.4e-13 79.7 98 48.0
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 1.9e-13 79.3 99 47.5
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 2.5e-13 79.0 100 47.0
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 4.2e-13 78.2 104 40.4
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 7.2e-13 77.4 97 45.4
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 7.2e-13 77.4 97 45.4
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 9.4e-13 77.0 100 46.0
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 9.4e-13 77.0 100 41.0
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 1.2e-12 76.6 100 44.0
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 1.2e-12 76.6 102 46.1
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 2.1e-12 75.9 99 47.5
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 2.1e-12 75.9 101 45.5
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 2.1e-12 75.9 115 43.5
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 2.1e-12 75.9 116 37.9
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 2.1e-12 75.9 99 42.4
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 2.1e-12 75.9 102 41.2
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 2.1e-12 75.9 102 41.2
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 3.6e-12 75.1 98 42.9
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 4.6e-12 74.7 100 44.0
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 4.6e-12 74.7 102 43.1
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 1.0e-11 73.6 99 42.4
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 1.4e-11 73.2 98 39.8
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 1.4e-11 73.2 100 41.0
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 1.8e-11 72.8 103 46.6
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 1.8e-11 72.8 77 51.9
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 2.3e-11 72.4 99 41.4
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 3.0e-11 72.0 98 45.9
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 3.0e-11 72.0 102 44.1
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 3.9e-11 71.6 99 41.4
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 5.1e-11 71.2 104 42.3
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 5.1e-11 71.2 115 36.5
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 6.7e-11 70.9 98 44.9
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.5e-10 69.7 102 45.1
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.5e-10 69.7 102 45.1
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 2.5e-10 68.9 103 41.7
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 2.5e-10 68.9 108 36.1
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 7.4e-10 67.4 97 42.3
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 9.7e-10 67.0 102 40.2
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 1.3e-09 66.6 99 42.4
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 1.3e-09 66.6 98 39.8
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 1.7e-09 66.2 68 50.0
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 3.7e-09 65.1 97 42.3
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 1.1e-08 63.5 51 60.8
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 4.1e-08 61.6 102 42.2
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 4.1e-08 61.6 90 43.3
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 2.6e-07 58.9 77 42.9
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 2.6e-07 58.9 98 39.8
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 5.9e-07 57.8 98 37.8
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 7.7e-07 57.4 76 44.7
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 2.2e-06 55.8 79 39.2
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 5.0e-06 54.7 78 38.5


User provided reference genes

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