Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 2.3e-287 991.5 484 100.0
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 6.7e-231 803.9 427 93.0
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 4.8e-229 797.7 402 96.5
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.7e-221 772.7 402 91.8
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.8e-221 771.2 402 92.0
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.3e-221 770.8 402 91.8
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 6.3e-221 770.8 403 91.1
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 8.3e-221 770.4 406 91.4
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.8e-220 769.2 413 89.6
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.8e-220 769.2 402 91.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 9.1e-220 766.9 402 90.8
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.2e-219 766.5 402 91.0
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.9e-219 764.2 402 90.5
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.0e-218 763.5 402 90.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-218 763.1 402 91.0
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 6.5e-218 760.8 402 90.0
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 8.6e-218 760.4 402 90.3
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 8.6e-218 760.4 402 90.3
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.1e-217 760.0 402 90.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.1e-217 760.0 401 89.3
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.1e-217 760.0 402 90.0
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.5e-217 759.6 402 90.0
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.5e-217 759.6 402 89.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 2.5e-217 758.8 402 91.0
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.5e-217 758.8 403 89.3
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.2e-217 758.1 402 90.0
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.2e-217 758.1 402 90.0
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 4.2e-217 758.1 402 90.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 5.5e-217 757.7 402 90.5
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 5.5e-217 757.7 417 88.5
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 7.2e-217 757.3 416 88.7
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 7.2e-217 757.3 402 90.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 1.6e-216 756.1 402 89.3
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-216 756.1 402 89.1
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.6e-216 756.1 402 90.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.1e-216 755.7 402 89.1
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.8e-216 755.4 402 89.8
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.8e-216 755.4 402 89.8
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.6e-216 755.0 402 89.6
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.6e-216 755.0 402 89.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 4.7e-216 754.6 402 90.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 4.7e-216 754.6 402 89.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.1e-216 754.2 402 89.6
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 6.1e-216 754.2 402 89.6
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 6.1e-216 754.2 402 90.3
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 8.0e-216 753.8 402 89.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.4e-215 753.1 402 89.6
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.4e-215 753.1 402 88.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.8e-215 752.7 402 89.3
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 2.3e-215 752.3 402 89.6
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 3.0e-215 751.9 402 89.1
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.0e-215 751.9 402 89.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.2e-215 751.1 402 89.1
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 5.2e-215 751.1 402 88.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 6.8e-215 750.7 402 89.1
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 8.8e-215 750.4 402 88.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 8.8e-215 750.4 402 89.1
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.2e-214 750.0 402 89.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.5e-214 749.6 402 89.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.0e-214 749.2 402 89.3
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.6e-214 748.8 402 88.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 2.6e-214 748.8 402 88.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.4e-214 748.4 402 89.6
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 3.4e-214 748.4 402 88.6
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 4.4e-214 748.0 411 88.1
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 4.4e-214 748.0 402 89.1
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 4.4e-214 748.0 402 89.1
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 4.4e-214 748.0 402 88.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 5.7e-214 747.7 402 88.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 7.5e-214 747.3 402 89.1
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.8e-213 745.3 402 88.6
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 4.9e-213 744.6 402 88.3
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 6.3e-213 744.2 402 87.8
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.1e-212 743.4 402 88.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.4e-212 743.0 402 88.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.8e-212 742.7 417 86.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 3.1e-212 741.9 403 87.3
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 5.4e-212 741.1 402 88.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.2e-211 740.0 402 88.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 3.5e-211 738.4 402 87.3
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 3.5e-211 738.4 402 87.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 7.8e-211 737.3 402 86.8
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.0e-210 736.9 402 87.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.0e-210 736.9 402 87.8
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 3.8e-210 734.9 402 87.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 3.3e-209 731.9 402 87.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 5.6e-209 731.1 397 87.7
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.6e-208 729.6 438 81.7
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 3.6e-208 728.4 441 81.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 8.0e-208 727.2 405 85.4
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.4e-207 726.5 402 86.3
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.4e-207 726.5 402 86.3
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.4e-207 726.5 402 86.3
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.4e-207 726.5 402 86.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.4e-207 726.5 403 86.4
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.8e-207 726.1 402 86.3
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.8e-207 726.1 402 86.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 5.2e-207 724.5 402 85.8
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 5.2e-207 724.5 402 86.1
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.2e-207 724.5 402 84.1
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 6.8e-207 724.2 402 85.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 6.8e-207 724.2 401 85.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.2e-206 723.4 403 85.4
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.2e-206 723.4 403 85.4
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.5e-206 723.0 402 85.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.5e-206 723.0 402 85.3
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.0e-206 722.6 402 85.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.0e-206 722.6 402 85.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 2.6e-206 722.2 429 81.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 4.4e-206 721.5 402 85.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 7.5e-206 720.7 402 86.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 3.7e-205 718.4 402 84.3
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 8.3e-205 717.2 402 85.3
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.7e-203 712.2 419 83.8
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 3.5e-203 711.8 405 85.4
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 4.6e-203 711.4 402 84.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.3e-202 709.1 400 83.2
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 5.0e-202 708.0 402 82.8
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.6e-200 701.8 402 83.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 4.0e-199 698.4 405 84.0
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 7.5e-198 694.1 375 88.3
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.3e-194 683.3 402 81.3
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 2.8e-192 675.6 402 81.1
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 8.1e-192 674.1 402 79.4
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-191 673.3 360 89.4
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.0e-190 669.5 357 88.5
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.4e-190 668.7 402 79.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.3e-189 666.8 361 89.5
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 9.9e-182 640.6 410 76.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 7.8e-179 630.9 401 73.8
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.7e-178 629.8 334 89.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 5.6e-177 624.8 402 72.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 6.2e-176 621.3 340 88.2
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.8e-174 614.8 402 71.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.2e-171 607.1 402 71.1
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.1e-171 606.3 403 75.2
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-169 600.1 403 70.0
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.5e-169 599.4 403 70.5
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 8.4e-165 584.3 402 69.7
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 4.2e-164 582.0 401 68.1
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.3e-159 565.1 403 67.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 5.3e-151 538.5 290 87.6
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.8e-144 516.2 403 66.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 1.8e-143 513.5 419 64.7
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.1e-140 504.2 402 65.7
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 2.6e-129 466.5 259 85.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.3e-120 437.6 394 53.3
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 2.5e-116 423.3 295 72.9
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 8.0e-115 418.3 395 52.9
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.8e-104 382.5 229 80.3
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 5.0e-101 372.5 225 80.4
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 5.5e-100 369.0 219 81.3
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 1.2e-99 367.9 219 80.4
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.7e-83 312.8 300 54.0
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.6e-81 307.0 160 91.2
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.9e-77 293.1 163 85.9
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.1e-55 221.9 116 90.5
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.7e-32 144.8 86 79.1
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 4.9e-32 143.3 351 29.3
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.5e-31 141.0 351 28.2
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.1e-18 97.1 47 95.7
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 4.7e-14 83.6 48 75.0
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.1e-12 79.0 66 59.1
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-12 77.8 316 23.1


User provided reference genes

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