Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.3e-215 752.7 366 100.0
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 5.8e-158 561.2 362 78.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 5.8e-134 481.5 366 67.5
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.2e-115 420.6 330 64.5
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.6e-107 393.7 335 59.4
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 2.1e-107 393.3 282 68.4
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.3e-106 390.6 246 72.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.0e-106 389.4 329 62.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 8.7e-106 387.9 328 60.1
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 6.3e-104 381.7 307 61.9
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 8.2e-104 381.3 331 60.4
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.1e-103 380.9 316 59.8
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.1e-103 380.9 385 53.8
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.4e-103 379.8 309 60.5
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 3.1e-103 379.4 311 62.4
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.9e-103 378.3 295 62.7
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.9e-103 378.3 295 62.7
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 6.9e-103 378.3 347 57.3
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.2e-102 377.5 327 59.9
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.5e-102 377.1 323 59.8
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 2.0e-102 376.7 327 59.6
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.6e-102 376.3 314 59.2
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.6e-102 376.3 279 62.4
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 3.4e-102 375.9 334 58.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 3.4e-102 375.9 276 65.9
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 4.5e-102 375.6 324 57.1
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.5e-102 375.6 327 58.4
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 7.6e-102 374.8 379 53.0
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 3.8e-101 372.5 295 63.1
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 3.8e-101 372.5 306 59.8
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 5.0e-101 372.1 294 61.6
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 5.0e-101 372.1 326 58.0
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.5e-101 371.7 330 57.3
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 6.5e-101 371.7 324 58.3
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 8.5e-101 371.3 330 57.0
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 8.5e-101 371.3 320 59.4
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 8.5e-101 371.3 280 62.9
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.4e-100 370.5 327 57.8
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.9e-100 370.2 296 61.1
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.9e-100 370.2 313 59.7
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.2e-100 369.4 336 58.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.2e-100 369.4 314 59.6
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 5.5e-100 368.6 315 59.4
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 9.3e-100 367.9 326 59.2
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 9.3e-100 367.9 320 56.6
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 9.3e-100 367.9 321 59.2
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 2.7e-99 366.3 313 58.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 2.7e-99 366.3 317 57.1
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 3.6e-99 365.9 323 58.8
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 4.6e-99 365.5 310 59.0
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 7.9e-99 364.8 320 59.1
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.3e-98 364.0 305 58.7
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.3e-98 363.2 334 58.7
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 2.3e-98 363.2 328 57.0
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 3.0e-98 362.8 320 58.1
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 3.0e-98 362.8 320 57.5
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.9e-98 362.5 320 57.8
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 6.7e-98 361.7 331 55.6
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 8.7e-98 361.3 320 59.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.3e-97 359.0 324 56.8
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.3e-97 359.0 324 56.8
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 5.7e-97 358.6 321 57.0
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.4e-97 358.2 302 62.3
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.3e-96 357.5 318 57.5
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.6e-96 357.1 311 56.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-96 356.3 285 61.4
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.8e-96 355.5 293 59.4
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.2e-96 354.8 293 59.0
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.2e-96 354.8 379 51.2
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.1e-95 354.4 284 63.0
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.1e-95 354.4 285 61.1
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.4e-95 354.0 316 57.6
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.4e-95 354.0 285 60.7
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.8e-95 353.6 316 56.6
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.4e-95 353.2 269 63.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 3.1e-95 352.8 294 62.2
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 4.1e-95 352.4 338 54.4
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 9.0e-95 351.3 312 56.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.2e-94 350.9 282 59.9
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.0e-94 350.1 326 56.1
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 4.5e-94 349.0 351 52.4
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.7e-93 347.1 282 59.6
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.7e-93 347.1 312 56.7
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 2.9e-93 346.3 319 56.7
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.9e-93 346.3 317 55.2
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.0e-93 345.5 281 59.4
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.1e-92 344.4 259 62.5
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.4e-92 344.0 285 60.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.4e-92 344.0 383 49.6
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.4e-92 344.0 334 56.0
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 7.2e-92 341.7 256 62.9
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.6e-91 340.5 255 62.7
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.6e-91 340.5 246 64.6
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.7e-91 339.7 278 58.6
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 3.6e-91 339.3 297 56.9
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 4.6e-91 339.0 235 66.0
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 7.9e-91 338.2 364 52.5
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.0e-90 337.8 302 55.0
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 2.3e-90 336.7 264 64.8
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 6.7e-90 335.1 280 59.6
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.1e-89 334.3 288 58.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.1e-87 327.8 280 57.5
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.1e-87 326.2 238 65.1
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 5.3e-87 325.5 291 58.4
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 5.3e-87 325.5 303 54.5
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 6.9e-87 325.1 341 52.8
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.1e-87 324.7 331 52.6
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 5.0e-85 318.9 292 56.2
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.2e-83 314.3 217 67.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.7e-83 312.4 225 65.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.1e-83 312.0 329 50.8
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 2.3e-82 310.1 334 51.8
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 7.4e-81 305.1 258 57.4
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 4.1e-79 299.3 362 44.8
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 5.7e-73 278.9 324 50.0
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 5.7e-73 278.9 261 52.1
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.8e-72 276.6 243 56.4
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.7e-69 267.3 233 55.8
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.2e-69 266.9 220 58.6
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.2e-69 266.9 275 49.8
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 4.0e-66 256.1 197 61.9
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.0e-65 253.8 202 59.9
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.3e-64 251.1 300 47.7
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 7.7e-62 241.9 173 64.7
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.9e-61 240.0 233 48.5
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.9e-61 240.0 233 48.5
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.8e-59 233.4 213 54.9
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.8e-56 223.4 260 42.7
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 6.3e-56 222.2 193 57.0
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.2e-54 218.0 213 52.1
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.6e-54 217.6 143 66.4
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 7.3e-52 208.8 157 63.7
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.0e-49 200.7 214 49.5
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.5e-49 198.7 161 59.6
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 9.8e-49 198.4 192 52.1
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.7e-46 190.3 158 58.9
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 5.6e-44 182.6 314 39.8
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 9.5e-44 181.8 260 36.9
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 2.9e-40 170.2 116 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 5.4e-39 166.0 135 60.0
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.6e-38 164.5 169 56.8
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-35 154.5 197 44.2
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.8e-34 149.1 105 64.8
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.1e-31 141.7 148 50.7
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 6.6e-29 132.5 120 58.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.7e-27 126.3 277 33.2
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.0e-21 108.6 164 46.3
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 3.3e-20 103.6 106 46.2
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.3e-20 103.2 76 61.8
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.4e-17 93.2 72 56.9
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 4.4e-17 93.2 70 62.9
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 6.4e-16 89.4 76 55.3
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-13 82.0 131 42.7
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 3.9e-13 80.1 74 59.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 3.4e-09 67.0 72 45.8
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.7e-06 57.4 181 29.8
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 6.0e-06 56.2 34 73.5


User provided reference genes

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