Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0380821 Helianthus annuus HOM05D004591 ORTHO05D005749 1.1e-206 723.0 358 100.0
HanXRQChr06g0174301 Helianthus annuus HOM05D004591 ORTHO05D005749 4.9e-170 601.3 354 85.6
Lalb_Chr13g0303761 Lupinus albus HOM05D004591 ORTHO05D005749 2.3e-143 512.7 352 73.0
arahy.Tifrunner.gnm1.ann1.7AW5Q0 Arachis hypogaea HOM05D004591 ORTHO05D005749 3.9e-143 511.9 352 72.7
arahy.Tifrunner.gnm1.ann1.Q8N8UE Arachis hypogaea HOM05D004591 ORTHO05D005749 3.9e-143 511.9 352 72.7
Hma1.2p1_0698F.1_g205415 Hydrangea macrophylla HOM05D004591 ORTHO05D005749 1.1e-142 510.4 352 72.2
Solyc01g067500.3 Solanum lycopersicum HOM05D004591 ORTHO05D005749 1.1e-142 510.4 352 72.7
Sopen01g029430 Solanum pennellii HOM05D004591 ORTHO05D005749 1.1e-142 510.4 352 72.7
QL06p007990 Quercus lobata HOM05D004591 ORTHO05D005749 1.9e-142 509.6 352 72.7
Peaxi162Scf00386g00533 Petunia axillaris HOM05D004591 ORTHO05D005749 2.5e-142 509.2 352 72.4
Manes.03G192300 Manihot esculenta HOM05D004591 ORTHO05D005749 3.3e-142 508.8 352 72.2
Actinidia01943 Actinidia chinensis HOM05D004591 ORTHO05D005749 4.3e-142 508.4 352 72.2
Duzib052G0124 Durio zibethinus HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.2
Gohir.A10G161800 Gossypium hirsutum HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.4
Gohir.D10G168300 Gossypium hirsutum HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.4
Gorai.011G187900 Gossypium raimondii HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.4
Lj4g0005644 Lotus japonicus HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.4
Phvul.003G102400 Phaseolus vulgaris HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.2
Thecc.04G279900 Theobroma cacao HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.2
VMungo1215G2997 Vigna mungo HOM05D004591 ORTHO05D005749 5.7e-142 508.1 352 72.2
MBI18_g01976_MAGBIO Magnolia biondii HOM05D004591 ORTHO05D005749 7.4e-142 507.7 352 71.9
Cc03_g02140 Coffea canephora HOM05D004591 ORTHO05D005749 9.7e-142 507.3 352 72.2
Lj4g0023442 Lotus japonicus HOM05D004591 ORTHO05D005749 9.7e-142 507.3 352 72.2
TAR365G0597 Trochodendron aralioides HOM05D004591 ORTHO05D005749 1.3e-141 506.9 352 72.2
Dinv44407 Davidia involucrata HOM05D004591 ORTHO05D005749 1.6e-141 506.5 352 71.9
Ciclev10005060m.g Citrus clementina HOM05D004591 ORTHO05D005749 2.2e-141 506.1 352 71.6
Potri.008G215300 Populus trichocarpa HOM05D004591 ORTHO05D005749 2.8e-141 505.8 352 71.6
Sabra08G0155500 Salix brachista HOM05D004591 ORTHO05D005749 2.8e-141 505.8 352 71.9
CSS0009969 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 3.7e-141 505.4 352 71.9
CAN.G580.3 Capsicum annuum HOM05D004591 ORTHO05D005749 3.7e-141 505.4 352 71.6
Hund20576 Selenicereus undatus HOM05D004591 ORTHO05D005749 3.7e-141 505.4 352 71.9
GSVIVG01017781001 Vitis vinifera HOM05D004591 ORTHO05D005749 3.7e-141 505.4 352 71.9
CiPaw.02G085000 Carya illinoinensis HOM05D004591 ORTHO05D005749 6.3e-141 504.6 352 72.2
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 8.2e-141 504.2 352 71.3
TAR636G0963 Trochodendron aralioides HOM05D004591 ORTHO05D005749 8.2e-141 504.2 352 71.6
CDE12G0904 Ceratophyllum demersum HOM05D004591 ORTHO05D005749 1.1e-140 503.8 352 70.7
HanXRQChr03g0080861 Helianthus annuus HOM05D004591 ORTHO05D005749 1.1e-140 503.8 352 72.2
Potri.010G022300 Populus trichocarpa HOM05D004591 ORTHO05D005749 1.4e-140 503.4 352 71.6
Ah.13g074560 Amaranthus hybridus HOM05D004591 ORTHO05D005749 1.8e-140 503.1 352 70.7
Glyma.17G024200 Glycine max HOM05D004591 ORTHO05D005749 1.8e-140 503.1 352 71.0
SGA_v2.0_scaffold43G16263 Striga asiatica HOM05D004591 ORTHO05D005749 1.8e-140 503.1 352 71.6
Glyma.07G250200 Glycine max HOM05D004591 ORTHO05D005749 2.4e-140 502.7 352 71.0
Nn3g21355 Nelumbo nucifera HOM05D004591 ORTHO05D005749 4.1e-140 501.9 352 71.3
Dinv38310 Davidia involucrata HOM05D004591 ORTHO05D005749 5.3e-140 501.5 352 71.3
EL10Ac3g06572 Beta vulgaris HOM05D004591 ORTHO05D005749 6.9e-140 501.1 352 71.0
Atru.chr4.2787 Acer truncatum HOM05D004591 ORTHO05D005749 1.2e-139 500.4 352 71.0
PGR004G2200 Punica granatum HOM05D004591 ORTHO05D005749 2.0e-139 499.6 352 71.3
unitig_578.g16759 Utricularia gibba HOM05D004591 ORTHO05D005749 2.6e-139 499.2 352 70.7
THA.LOC104818847 Tarenaya hassleriana HOM05D004591 ORTHO05D005749 3.4e-139 498.8 352 70.7
Nn4g25961 Nelumbo nucifera HOM05D004591 ORTHO05D005749 4.5e-139 498.4 352 71.0
Psat4g047160 Pisum sativum HOM05D004591 ORTHO05D005749 4.5e-139 498.4 353 71.4
CSS0050493 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 5.9e-139 498.0 359 70.5
AUR62041198 Chenopodium quinoa HOM05D004591 ORTHO05D005749 7.6e-139 497.7 352 70.2
Eucgr.H03866 Eucalyptus grandis HOM05D004591 ORTHO05D005749 7.6e-139 497.7 352 71.0
HPP92_016927 Vanilla planifolia HOM05D004591 ORTHO05D005749 7.6e-139 497.7 352 71.0
TWI09G1039 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 1.7e-138 496.5 352 70.5
Migut.N01937 Erythranthe guttata HOM05D004591 ORTHO05D005749 2.2e-138 496.1 352 70.5
Sed0000507 Sechium edule HOM05D004591 ORTHO05D005749 6.5e-138 494.6 352 69.9
MELO3C006623.2 Cucumis melo HOM05D004591 ORTHO05D005749 8.5e-138 494.2 352 69.6
CsaV3_3G014300 Cucumis sativus L. HOM05D004591 ORTHO05D005749 8.5e-138 494.2 352 69.6
TWI53G0054 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 1.1e-137 493.8 352 69.9
TWI53G1348 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 1.1e-137 493.8 352 69.9
MSTRG.28019 Avicennia marina HOM05D004591 ORTHO05D005749 1.9e-137 493.0 352 70.2
MD16G1173200 Malus domestica HOM05D004591 ORTHO05D005749 3.2e-137 492.3 352 70.2
Aqoxy2G03072 Aquilegia oxysepala HOM05D004591 ORTHO05D005749 5.5e-137 491.5 352 69.9
ClCG05G005920 Citrullus lanatus HOM05D004591 ORTHO05D005749 5.5e-137 491.5 352 69.3
AUR62043784 Chenopodium quinoa HOM05D004591 ORTHO05D005749 1.6e-136 490.0 367 67.8
Medtr4g119230 Medicago truncatula HOM05D004591 ORTHO05D005749 2.1e-136 489.6 352 69.9
Os05g0149800 Oryza sativa ssp. japonica HOM05D004591 ORTHO05D005749 3.6e-136 488.8 352 69.0
RcHm_v2.0_Chr4g0421481 Rosa chinensis HOM05D004591 ORTHO05D005749 3.6e-136 488.8 352 69.9
BraA02t05460Z Brassica rapa HOM05D004591 ORTHO05D005749 7.9e-136 487.6 352 70.5
BraA03t10221Z Brassica rapa HOM05D004591 ORTHO05D005749 7.9e-136 487.6 354 69.8
MD13G1171500 Malus domestica HOM05D004591 ORTHO05D005749 7.9e-136 487.6 352 69.9
BolC2t06906H Brassica oleracea HOM05D004591 ORTHO05D005749 2.3e-135 486.1 352 69.6
TPR.G14635 Trifolium pratense HOM05D004591 ORTHO05D005749 2.3e-135 486.1 352 69.3
Haze_01244 Corylus avellana HOM05D004591 ORTHO05D005749 3.0e-135 485.7 370 67.3
FvH4_4g17580 Fragaria vesca HOM05D004591 ORTHO05D005749 3.9e-135 485.3 352 69.3
ECA240G1474 Erigeron canadensis HOM05D004591 ORTHO05D005749 5.1e-135 485.0 352 70.5
AL6G29850 Arabidopsis lyrata HOM05D004591 ORTHO05D005749 6.7e-135 484.6 352 69.9
A03p08950 Brassica napus HOM05D004591 ORTHO05D005749 8.7e-135 484.2 352 70.2
SalBow3G4019 Salvia bowleyana HOM05D004591 ORTHO05D005749 1.9e-134 483.0 367 67.3
BcaB05g23341 Brassica carinata HOM05D004591 ORTHO05D005749 3.3e-134 482.3 352 69.3
BcaC03g13610 Brassica carinata HOM05D004591 ORTHO05D005749 3.3e-134 482.3 352 69.3
Carub.0006s1686 Capsella rubella HOM05D004591 ORTHO05D005749 3.3e-134 482.3 352 69.6
Oeu062899.1 Olea europaea HOM05D004591 ORTHO05D005749 4.3e-134 481.9 387 64.3
A02p05010 Brassica napus HOM05D004591 ORTHO05D005749 7.4e-134 481.1 352 69.3
C02p10040 Brassica napus HOM05D004591 ORTHO05D005749 7.4e-134 481.1 352 69.0
Thhalv10013373m.g Eutrema salsugineum HOM05D004591 ORTHO05D005749 7.4e-134 481.1 352 69.0
Lsat_1_v5_gn_5_52860 Lactuca sativa HOM05D004591 ORTHO05D005749 1.7e-133 479.9 352 69.0
PSO210G4745 Papaver somniferum HOM05D004591 ORTHO05D005749 2.8e-133 479.2 352 68.5
CARHR194440 Cardamine hirsuta HOM05D004591 ORTHO05D005749 3.7e-133 478.8 352 69.3
Sp6g25750 Schrenkiella parvula HOM05D004591 ORTHO05D005749 3.7e-133 478.8 352 69.0
AT5G18580 Arabidopsis thaliana HOM05D004591 ORTHO05D005749 1.1e-132 477.2 352 68.8
BcaB01g05264 Brassica carinata HOM05D004591 ORTHO05D005749 1.8e-132 476.5 352 68.8
CANSAT78G2472 Cannabis sativa HOM05D004591 ORTHO05D005749 1.8e-132 476.5 352 68.2
DCAR_002455 Daucus carota HOM05D004591 ORTHO05D005749 1.8e-132 476.5 352 68.2
DCAR_002457 Daucus carota HOM05D004591 ORTHO05D005749 1.8e-132 476.5 352 68.2
FAN07G0597 Fragaria x ananassa HOM05D004591 ORTHO05D005749 2.4e-132 476.1 371 66.8
A10p20980 Brassica napus HOM05D004591 ORTHO05D005749 8.5e-130 467.6 352 66.8
BraA10t44163Z Brassica rapa HOM05D004591 ORTHO05D005749 1.1e-129 467.2 352 66.8
FAN12G0549 Fragaria x ananassa HOM05D004591 ORTHO05D005749 3.2e-129 465.7 352 67.0
FAN12G3150 Fragaria x ananassa HOM05D004591 ORTHO05D005749 3.2e-129 465.7 352 67.0
Oeu044779.2 Olea europaea HOM05D004591 ORTHO05D005749 4.2e-129 465.3 398 61.8
vmacro08109 Vaccinium macrocarpon HOM05D004591 ORTHO05D005749 9.4e-129 464.2 428 58.4
FAN17G1172 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.6e-128 463.4 371 64.7
BcaB08g36661 Brassica carinata HOM05D004591 ORTHO05D005749 2.7e-128 462.6 352 66.5
Lsat_1_v5_gn_3_27301 Lactuca sativa HOM05D004591 ORTHO05D005749 2.7e-128 462.6 256 87.1
C03p10420 Brassica napus HOM05D004591 ORTHO05D005749 3.0e-127 459.1 352 66.5
Duzib151G0997 Durio zibethinus HOM05D004591 ORTHO05D005749 6.7e-127 458.0 347 67.7
BolC3t13524H Brassica oleracea HOM05D004591 ORTHO05D005749 2.6e-126 456.1 352 66.2
COL.COLO4_13908 Corchorus olitorius HOM05D004591 ORTHO05D005749 3.3e-126 455.7 256 83.6
Rhsim04G0218600 Rhododendron simsii HOM05D004591 ORTHO05D005749 2.8e-125 452.6 448 55.8
Sc25g0004740 Simmondsia chinensis HOM05D004591 ORTHO05D005749 5.3e-124 448.4 270 79.6
Aa31LG11G11040 Aethionema arabicum HOM05D004591 ORTHO05D005749 1.5e-123 446.8 352 66.2
Prupe.1G140000 Prunus persica HOM05D004591 ORTHO05D005749 5.9e-123 444.9 256 82.0
SMO118G0294 Selaginella moellendorffii HOM05D004591 ORTHO05D005749 5.0e-122 441.8 352 62.8
Mapoly0035s0147 Marchantia polymorpha HOM05D004591 ORTHO05D005749 8.5e-122 441.0 352 61.9
PSO832G1860 Papaver somniferum HOM05D004591 ORTHO05D005749 3.6e-120 435.6 256 80.1
Zm00001eb418170 Zea mays HOM05D004591 ORTHO05D005749 3.7e-117 425.6 352 63.1
Manes.15G015000 Manihot esculenta HOM05D004591 ORTHO05D005749 4.8e-117 425.2 352 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5538 Anthoceros agrestis HOM05D004591 ORTHO05D005749 1.8e-116 423.3 378 58.2
Nitab4.5_0000644g0140 Nicotiana tabacum HOM05D004591 ORTHO05D005749 3.1e-116 422.5 301 71.4
Pp3c6_6290 Physcomitrium patens HOM05D004591 ORTHO05D005749 1.2e-112 410.6 326 63.2
ECA246G1561 Erigeron canadensis HOM05D004591 ORTHO05D005749 2.8e-109 399.4 352 60.2
Zm00001eb354190 Zea mays HOM05D004591 ORTHO05D005749 2.4e-108 396.4 231 79.7
Lj3A813T31 Lonicera japonica HOM05D004591 ORTHO05D005749 1.5e-102 377.1 352 58.0
BolC9t58658H Brassica oleracea HOM05D004591 ORTHO05D005749 2.0e-102 376.7 340 59.4
BcaC04g18665 Brassica carinata HOM05D004591 ORTHO05D005749 4.5e-99 365.5 330 59.1
C09p57910 Brassica napus HOM05D004591 ORTHO05D005749 1.7e-98 363.6 329 59.0
Actinidia40243 Actinidia chinensis HOM05D004591 ORTHO05D005749 6.5e-98 361.7 202 85.1
DCAR_002452 Daucus carota HOM05D004591 ORTHO05D005749 4.1e-84 315.8 352 50.6
CBR_g7999 Chara braunii HOM05D004591 ORTHO05D005749 6.6e-74 282.0 361 44.6
ATR0706G153 Amborella trichopoda HOM05D004591 ORTHO05D005749 4.4e-62 242.7 206 60.2
Nn1g02295 Nelumbo nucifera HOM05D004591 ORTHO05D005749 1.6e-59 234.2 157 76.4
Cpa.g.sc16.134 Carica papaya HOM05D004591 ORTHO05D005749 1.3e-58 231.1 190 62.1
Zm00001eb308510 Zea mays HOM05D004591 ORTHO05D005749 1.7e-58 230.7 204 58.8
Lsat_1_v5_gn_2_7960 Lactuca sativa HOM05D004591 ORTHO05D005749 1.4e-44 184.5 168 57.1
Zm00001eb083940 Zea mays HOM05D004591 ORTHO05D005749 9.9e-38 161.8 164 51.2
Cre01.g047900 Chlamydomonas reinhardtii HOM05D004591 ORTHO05D005749 3.2e-36 156.8 256 33.2
PRCOL_00004048 Prasinoderma coloniale HOM05D004591 ORTHO05D005749 9.3e-36 155.2 276 32.6
Manes.07G083301 Manihot esculenta HOM05D004591 ORTHO05D005749 3.0e-34 150.2 172 50.0
Nn1g09549 Nelumbo nucifera HOM05D004591 ORTHO05D005749 5.1e-34 149.4 100 74.0
MCO11G522 Micromonas commoda HOM05D004591 ORTHO05D005749 3.7e-32 143.3 275 33.5
Psat4g047200 Pisum sativum HOM05D004591 ORTHO05D005749 4.6e-19 99.8 205 35.6
Lsat_1_v5_gn_1_116641 Lactuca sativa HOM05D004591 ORTHO05D005749 2.0e-09 67.8 131 37.4


User provided reference genes

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